Wall clock time and date at job start Mon Mar 30 2020 01:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00559 * 2 1 4 4 H 1.48501 * 109.47103 * 240.00457 * 3 2 1 5 5 H 1.48504 * 109.46697 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46999 * 120.00004 * 3 2 1 7 7 C 1.37885 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99798 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00245 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47336 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47196 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47311 * 59.99887 * 11 10 9 13 13 N 1.46904 * 109.46904 * 60.00253 * 12 11 10 14 14 C 1.46899 * 111.00029 * 155.00222 * 13 12 11 15 15 C 1.50703 * 109.47107 * 179.97438 * 14 13 12 16 16 C 1.38270 * 119.94279 * 269.72587 * 15 14 13 17 17 C 1.38141 * 120.05541 * 179.72666 * 16 15 14 18 18 C 1.38732 * 119.94181 * 0.56721 * 17 16 15 19 19 O 1.35897 * 120.05770 * 179.68339 * 18 17 16 20 20 C 1.38738 * 119.89002 * 359.70543 * 18 17 16 21 21 C 1.38141 * 119.94391 * 0.02562 * 20 18 17 22 22 C 1.52993 * 109.47083 * 300.00183 * 12 11 10 23 23 C 1.52998 * 109.46814 * 59.99744 * 9 7 2 24 24 H 0.97007 * 119.99679 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46830 * 300.00239 * 9 7 2 26 26 H 1.09008 * 109.47285 * 59.99760 * 10 9 7 27 27 H 1.09002 * 109.46994 * 300.00249 * 10 9 7 28 28 H 1.08997 * 109.47164 * 299.99513 * 11 10 9 29 29 H 1.09005 * 109.46948 * 180.02562 * 11 10 9 30 30 H 1.08994 * 109.47263 * 179.97438 * 12 11 10 31 31 H 1.00902 * 111.00190 * 31.03923 * 13 12 11 32 32 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 33 33 H 1.09001 * 109.47354 * 59.99854 * 14 13 12 34 34 H 1.07999 * 119.97019 * 359.97438 * 16 15 14 35 35 H 1.07998 * 120.03323 * 180.24999 * 17 16 15 36 36 H 0.96700 * 114.00100 * 270.02309 * 19 18 17 37 37 H 1.07996 * 120.02821 * 179.97438 * 20 18 17 38 38 H 1.07993 * 119.97516 * 180.02562 * 21 20 18 39 39 H 1.09001 * 109.46997 * 179.97438 * 22 12 11 40 40 H 1.08999 * 109.47404 * 299.99876 * 22 12 11 41 41 H 1.08998 * 109.47315 * 300.00313 * 23 9 7 42 42 H 1.08999 * 109.47019 * 60.00610 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 6 1.4800 -4.9871 -0.0025 12 6 0.5998 -5.0672 -1.2513 13 7 1.4439 -4.9886 -2.4511 14 6 0.7886 -5.6301 -3.5987 15 6 1.6820 -5.5293 -4.8082 16 6 1.5755 -4.4424 -5.6563 17 6 2.3971 -4.3449 -6.7625 18 6 3.3216 -5.3444 -7.0287 19 8 4.1266 -5.2540 -8.1198 20 6 3.4227 -6.4367 -6.1793 21 6 2.6026 -6.5269 -5.0713 22 6 -0.3943 -3.9043 -1.2501 23 6 0.3708 -2.5799 -1.2494 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5571 0.8897 26 1 2.8725 -3.6049 0.8877 27 1 2.8710 -3.6040 -0.8923 28 1 0.8538 -5.0455 0.8878 29 1 2.1883 -5.8157 -0.0029 30 1 0.0551 -6.0113 -1.2520 31 1 2.3526 -5.3929 -2.2811 32 1 0.6022 -6.6796 -3.3707 33 1 -0.1576 -5.1292 -3.8036 34 1 0.8520 -3.6671 -5.4514 35 1 2.3164 -3.4938 -7.4224 36 1 3.7560 -5.6576 -8.9165 37 1 4.1413 -7.2163 -6.3846 38 1 2.6811 -7.3767 -4.4096 39 1 -1.0211 -3.9611 -2.1400 40 1 -1.0206 -3.9626 -0.3599 41 1 -0.3374 -1.7514 -1.2490 42 1 0.9971 -2.5220 -2.1396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173325392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:08 Heat of formation + Delta-G solvation = -55.541296 kcal Electronic energy + Delta-G solvation = -21228.510412 eV Core-core repulsion = 18171.628192 eV Total energy + Delta-G solvation = -3056.882220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.72568 -39.73804 -37.89558 -35.86702 -34.09257 -31.89868 -31.61632 -31.28594 -29.55398 -26.55678 -25.40629 -23.71678 -23.15175 -22.22359 -22.10081 -19.69475 -19.31792 -18.33147 -17.25356 -16.82666 -16.59580 -16.26749 -15.94511 -15.73174 -15.47743 -14.79242 -14.52553 -14.35000 -14.20238 -13.88396 -13.55723 -13.22364 -13.13023 -12.95831 -12.75990 -12.67339 -12.60158 -12.45802 -12.01444 -11.85844 -11.72299 -11.55350 -11.34787 -11.09647 -10.65060 -10.36116 -10.23169 -9.89873 -9.47138 -9.05438 -8.01020 -6.14076 0.28391 0.44734 1.40725 1.42423 1.49559 2.46515 2.67492 3.24326 3.32562 3.51235 3.90712 3.95595 4.08730 4.11187 4.21985 4.34980 4.43592 4.48407 4.71972 4.72891 4.78599 4.86129 4.95954 4.97330 5.01513 5.05623 5.12520 5.18318 5.23687 5.37225 5.38626 5.49528 5.54851 5.66564 5.72198 5.73073 5.87933 5.94278 6.20998 6.28519 6.35508 6.54074 6.66299 6.88696 6.99809 7.52609 9.01816 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017166 B = 0.004525 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.701963 B = 6185.848682 C = 7150.845623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.946 3.054 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.532 4.532 8 H 0.045 0.955 9 C 0.049 3.951 10 C -0.094 4.094 11 C -0.111 4.111 12 C 0.104 3.896 13 N -0.682 5.682 14 C 0.104 3.896 15 C -0.093 4.093 16 C -0.094 4.094 17 C -0.159 4.159 18 C 0.094 3.906 19 O -0.511 6.511 20 C -0.151 4.151 21 C -0.097 4.097 22 C -0.101 4.101 23 C -0.083 4.083 24 H 0.257 0.743 25 H -0.016 1.016 26 H 0.033 0.967 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.343 0.657 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.120 0.880 35 H 0.132 0.868 36 H 0.409 0.591 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.049 0.951 40 H 0.043 0.957 41 H 0.041 0.959 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.480 -16.531 -12.638 20.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.772 3.228 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.570 4.570 8 H 0.063 0.937 9 C 0.031 3.969 10 C -0.132 4.132 11 C -0.149 4.149 12 C -0.006 4.006 13 N -0.315 5.315 14 C -0.025 4.025 15 C -0.094 4.094 16 C -0.113 4.113 17 C -0.177 4.177 18 C 0.050 3.950 19 O -0.325 6.325 20 C -0.169 4.169 21 C -0.115 4.115 22 C -0.139 4.139 23 C -0.121 4.121 24 H 0.066 0.934 25 H 0.002 0.998 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.162 0.838 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.138 0.862 35 H 0.150 0.850 36 H 0.268 0.732 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.481 -15.495 -12.413 20.008 hybrid contribution 0.034 0.413 0.003 0.415 sum 2.515 -15.081 -12.410 19.692 Atomic orbital electron populations 1.70036 1.07009 1.26703 1.51883 1.25682 0.95616 1.02034 0.95203 0.85804 0.78554 0.79783 0.78647 1.20053 1.20908 1.19726 1.21635 0.92766 0.92808 1.49770 0.93709 1.18576 0.93080 0.92074 0.93213 1.21365 0.97801 0.94554 0.99430 1.21682 0.98606 0.97476 0.97150 1.21363 0.93630 0.96372 0.89188 1.60345 1.05784 1.61152 1.04202 1.20879 0.96043 0.97521 0.88009 1.19932 0.98184 0.94991 0.96265 1.21065 0.98938 0.97430 0.93886 1.21565 0.96344 1.00195 0.99619 1.18613 0.91610 0.94369 0.90455 1.84778 1.44998 1.82240 1.20440 1.21585 1.00758 0.98314 0.96264 1.21155 0.94397 0.98940 0.97036 1.21507 0.96929 0.96025 0.99415 1.21124 0.98142 0.95071 0.97804 0.93367 0.99814 0.94791 0.92928 0.92205 0.90576 0.92634 0.83764 0.92779 0.91132 0.86200 0.85036 0.73238 0.83729 0.83726 0.93255 0.93802 0.94066 0.94754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.95 11.32 21.45 0.24 -54.71 16 2 C 0.01 0.73 5.30 84.66 0.45 1.18 16 3 Si 0.95 45.53 29.54 68.60 2.03 47.56 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 5 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.53 -30.70 8.56 25.60 0.22 -30.48 16 8 H 0.04 2.56 7.74 -2.91 -0.02 2.54 16 9 C 0.05 2.53 2.10 -11.54 -0.02 2.50 16 10 C -0.09 -3.90 4.98 30.59 0.15 -3.75 16 11 C -0.11 -3.56 5.30 30.59 0.16 -3.40 16 12 C 0.10 3.16 2.82 44.91 0.13 3.28 16 13 N -0.68 -19.67 4.81 -495.58 -2.38 -22.06 16 14 C 0.10 2.47 5.61 85.56 0.48 2.95 16 15 C -0.09 -2.21 5.39 -19.85 -0.11 -2.31 16 16 C -0.09 -2.44 9.69 22.25 0.22 -2.22 16 17 C -0.16 -3.80 9.99 22.37 0.22 -3.58 16 18 C 0.09 2.07 6.71 22.51 0.15 2.22 16 19 O -0.51 -9.70 13.50 -92.39 -1.25 -10.95 16 20 C -0.15 -2.97 9.99 22.37 0.22 -2.75 16 21 C -0.10 -1.92 9.69 22.25 0.22 -1.71 16 22 C -0.10 -3.83 5.53 30.58 0.17 -3.66 16 23 C -0.08 -4.06 4.82 30.58 0.15 -3.91 16 24 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 25 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 26 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.05 2.21 7.48 -2.39 -0.02 2.19 16 28 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.08 1.96 8.12 -2.38 -0.02 1.94 16 30 H 0.06 1.42 7.80 -2.39 -0.02 1.40 16 31 H 0.34 9.17 8.18 -89.69 -0.73 8.43 16 32 H 0.05 1.05 8.00 -2.39 -0.02 1.03 16 33 H 0.07 1.81 7.38 -2.39 -0.02 1.79 16 34 H 0.12 3.23 8.06 -2.91 -0.02 3.20 16 35 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 36 H 0.41 3.37 9.06 -74.06 -0.67 2.70 16 37 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 39 H 0.05 1.75 7.45 -2.39 -0.02 1.73 16 40 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.04 2.32 6.07 -2.39 -0.01 2.30 16 42 H 0.03 1.73 7.60 -2.39 -0.02 1.71 16 Total: -1.00 -67.60 334.97 1.05 -66.55 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -0.39 Total: 19.24 kcal Atomic # 6 Polarization: -48.44 SS G_CDS: 2.80 Total: -45.64 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -2.14 Total: -76.77 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -1.25 Total: -10.95 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -67.60 1.05 -66.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173325392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.012 kcal (2) G-P(sol) polarization free energy of solvation -67.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds