Wall clock time and date at job start Mon Mar 30 2020 01:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99765 * 2 1 4 4 H 1.48501 * 109.47290 * 274.99133 * 3 2 1 5 5 H 1.48503 * 109.47352 * 34.99087 * 3 2 1 6 6 H 1.48498 * 109.47058 * 154.98794 * 3 2 1 7 7 C 1.37873 * 120.00400 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00532 * 189.54830 * 7 2 1 9 9 C 1.50702 * 119.99618 * 9.55221 * 7 2 1 10 10 C 1.53003 * 109.46933 * 185.42739 * 9 7 2 11 11 C 1.53002 * 109.46945 * 299.99580 * 10 9 7 12 12 C 1.53005 * 109.47271 * 300.00268 * 11 10 9 13 13 N 1.46894 * 109.47416 * 180.02562 * 12 11 10 14 14 C 1.46892 * 111.00365 * 154.99774 * 13 12 11 15 15 C 1.50699 * 109.47639 * 179.97438 * 14 13 12 16 16 C 1.38158 * 120.03125 * 260.00425 * 15 14 13 17 17 C 1.38253 * 120.05750 * 179.97438 * 16 15 14 18 18 C 1.38286 * 120.11053 * 0.02562 * 17 16 15 19 19 C 1.38132 * 120.05492 * 0.02562 * 18 17 16 20 20 C 1.38711 * 120.02302 * 79.72018 * 15 14 13 21 21 O 1.35899 * 120.05815 * 0.02562 * 20 15 14 22 22 C 1.53001 * 109.47012 * 59.99840 * 12 11 10 23 23 C 1.52996 * 109.47360 * 65.42367 * 9 7 2 24 24 H 0.96998 * 119.99661 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47144 * 305.42218 * 9 7 2 26 26 H 1.08999 * 109.46753 * 180.02562 * 10 9 7 27 27 H 1.08993 * 109.47273 * 59.99485 * 10 9 7 28 28 H 1.08998 * 109.46901 * 59.99921 * 11 10 9 29 29 H 1.08996 * 109.46907 * 180.02562 * 11 10 9 30 30 H 1.09008 * 109.46989 * 300.00212 * 12 11 10 31 31 H 1.00906 * 110.99921 * 278.95377 * 13 12 11 32 32 H 1.09003 * 109.47719 * 300.00543 * 14 13 12 33 33 H 1.09002 * 109.47155 * 59.99737 * 14 13 12 34 34 H 1.08004 * 119.97413 * 359.97438 * 16 15 14 35 35 H 1.07994 * 119.94406 * 179.97438 * 17 16 15 36 36 H 1.07993 * 119.97359 * 180.02562 * 18 17 16 37 37 H 1.07996 * 120.02486 * 179.97438 * 19 18 17 38 38 H 0.96704 * 114.00407 * 89.99664 * 21 20 15 39 39 H 1.09002 * 109.46866 * 180.02562 * 22 12 11 40 40 H 1.08998 * 109.47440 * 60.00174 * 22 12 11 41 41 H 1.09008 * 109.47082 * 180.02562 * 23 9 7 42 42 H 1.09001 * 109.47366 * 299.99580 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3912 2.1074 -1.3948 5 1 1.5033 2.6200 0.8029 6 1 3.5954 1.4121 0.5920 7 6 2.0047 -1.1940 0.0005 8 1 3.0734 -1.2004 0.1557 9 6 1.2668 -2.4901 -0.2155 10 6 2.2326 -3.6630 -0.0345 11 6 3.3703 -3.5482 -1.0512 12 6 2.7931 -3.5766 -2.4679 13 7 3.8854 -3.4671 -3.4439 14 6 3.5029 -4.0624 -4.7312 15 6 4.6455 -3.9310 -5.7049 16 6 4.6341 -2.9259 -6.6528 17 6 5.6823 -2.8044 -7.5460 18 6 6.7444 -3.6885 -7.4936 19 6 6.7601 -4.6957 -6.5485 20 6 5.7125 -4.8154 -5.6464 21 8 5.7286 -5.8016 -4.7116 22 6 1.8273 -2.4038 -2.6487 23 6 0.6897 -2.5185 -1.6321 24 1 -0.4849 0.8401 -0.0004 25 1 0.4563 -2.5719 0.5088 26 1 1.6990 -4.6004 -0.1912 27 1 2.6438 -3.6427 0.9746 28 1 3.9039 -2.6107 -0.8950 29 1 4.0580 -4.3840 -0.9226 30 1 2.2594 -4.5142 -2.6241 31 1 4.1712 -2.5064 -3.5605 32 1 3.2665 -5.1168 -4.5880 33 1 2.6286 -3.5445 -5.1255 34 1 3.8055 -2.2344 -6.6960 35 1 5.6712 -2.0184 -8.2864 36 1 7.5622 -3.5913 -8.1921 37 1 7.5895 -5.3861 -6.5082 38 1 5.3168 -6.6267 -5.0030 39 1 1.4158 -2.4243 -3.6579 40 1 2.3609 -1.4663 -2.4925 41 1 0.1556 -3.4559 -1.7882 42 1 0.0016 -1.6830 -1.7610 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173326050.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:12 Heat of formation + Delta-G solvation = -37.929611 kcal Electronic energy + Delta-G solvation = -21387.776825 eV Core-core repulsion = 18331.658305 eV Total energy + Delta-G solvation = -3056.118520 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.94105 -38.11850 -36.62358 -34.94809 -32.38745 -31.09018 -29.87630 -29.54253 -27.92222 -25.17308 -24.06970 -22.64726 -21.52464 -21.16448 -20.59459 -18.76979 -18.30546 -16.32655 -16.00702 -15.63510 -15.40822 -14.83412 -14.51501 -14.35705 -13.91059 -13.62067 -13.36098 -12.92200 -12.68431 -12.45928 -12.37477 -12.01978 -11.78736 -11.44976 -11.32323 -11.15662 -10.98527 -10.85592 -10.52478 -10.37138 -10.32626 -10.03711 -9.68480 -9.19593 -8.97669 -8.89358 -8.65046 -8.62804 -8.23510 -7.77092 -5.95988 -3.94759 1.17513 1.22073 3.32105 3.40234 3.43733 3.53516 4.19213 4.48786 4.62095 4.76203 4.85730 4.98938 5.18391 5.37118 5.40181 5.54430 5.57451 5.68626 5.82681 5.87270 5.94963 6.10221 6.24240 6.36103 6.37947 6.41656 6.50425 6.51761 6.56278 6.73295 6.74305 6.80982 6.95090 7.15160 7.20788 7.30915 7.49141 7.60803 7.68701 7.79098 7.84195 7.98292 8.09335 8.54667 9.08532 9.67063 11.13551 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022126 B = 0.004372 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.156915 B = 6402.266835 C = 7018.673991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.879 3.121 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.501 4.501 8 H 0.056 0.944 9 C 0.042 3.958 10 C -0.107 4.107 11 C -0.092 4.092 12 C 0.096 3.904 13 N -0.675 5.675 14 C 0.105 3.895 15 C -0.105 4.105 16 C -0.099 4.099 17 C -0.132 4.132 18 C -0.109 4.109 19 C -0.152 4.152 20 C 0.129 3.871 21 O -0.484 6.484 22 C -0.130 4.130 23 C -0.097 4.097 24 H 0.258 0.742 25 H 0.030 0.970 26 H 0.031 0.969 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.339 0.661 32 H 0.074 0.926 33 H 0.035 0.965 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.383 0.617 39 H 0.028 0.972 40 H 0.072 0.928 41 H 0.017 0.983 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.962 -9.347 -14.815 19.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.707 3.293 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.539 4.539 8 H 0.075 0.925 9 C 0.023 3.977 10 C -0.145 4.145 11 C -0.130 4.130 12 C -0.013 4.013 13 N -0.305 5.305 14 C -0.024 4.024 15 C -0.106 4.106 16 C -0.118 4.118 17 C -0.150 4.150 18 C -0.127 4.127 19 C -0.171 4.171 20 C 0.084 3.916 21 O -0.293 6.293 22 C -0.169 4.169 23 C -0.136 4.136 24 H 0.067 0.933 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.156 0.844 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.239 0.761 39 H 0.047 0.953 40 H 0.091 0.909 41 H 0.036 0.964 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.417 -9.386 -14.228 19.473 hybrid contribution -0.418 1.405 -0.722 1.634 sum 8.999 -7.981 -14.950 19.188 Atomic orbital electron populations 1.69971 1.05883 1.26184 1.50964 1.24937 0.94657 0.98774 0.95477 0.86780 0.80235 0.84370 0.77867 1.20929 1.21464 1.19886 1.21165 0.93968 0.90775 1.47992 0.92543 1.18699 0.94021 0.92298 0.92656 1.21557 0.97088 0.98325 0.97501 1.21344 0.97581 1.01291 0.92756 1.21570 0.89741 0.97690 0.92283 1.60693 1.38698 1.23766 1.07320 1.20692 0.92607 1.00375 0.88686 1.20315 0.96401 0.96857 0.97019 1.21056 0.98812 0.97152 0.94792 1.21119 0.94456 0.99698 0.99769 1.20995 0.98368 0.94970 0.98357 1.21438 0.99450 1.00532 0.95667 1.18291 0.93082 0.91390 0.88856 1.84933 1.82019 1.23615 1.38722 1.22071 0.98424 0.99245 0.97139 1.21375 0.96376 0.98726 0.97078 0.93270 0.95187 0.95002 0.93376 0.91365 0.93804 0.92097 0.84361 0.90744 0.94687 0.85783 0.85989 0.85957 0.85677 0.76146 0.95349 0.90947 0.96438 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.57 12.16 55.43 0.67 -24.90 16 2 C 0.06 1.71 5.20 -17.82 -0.09 1.62 16 3 Si 0.88 21.31 29.55 -169.99 -5.02 16.29 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.50 -13.38 6.63 -34.44 -0.23 -13.61 16 8 H 0.06 1.51 6.53 -52.49 -0.34 1.17 16 9 C 0.04 1.03 2.45 -91.77 -0.22 0.80 16 10 C -0.11 -2.24 5.42 -26.73 -0.14 -2.39 16 11 C -0.09 -1.80 5.30 -26.73 -0.14 -1.94 16 12 C 0.10 1.74 2.47 -67.71 -0.17 1.57 16 13 N -0.68 -10.97 6.24 -107.99 -0.67 -11.65 16 14 C 0.11 1.45 5.27 -4.98 -0.03 1.42 16 15 C -0.10 -1.33 5.41 -104.48 -0.56 -1.90 16 16 C -0.10 -1.14 9.66 -39.61 -0.38 -1.53 16 17 C -0.13 -1.34 10.04 -39.56 -0.40 -1.73 16 18 C -0.11 -1.05 10.04 -39.60 -0.40 -1.45 16 19 C -0.15 -1.63 9.99 -39.43 -0.39 -2.02 16 20 C 0.13 1.59 6.68 -39.21 -0.26 1.33 16 21 O -0.48 -5.83 12.74 -19.42 -0.25 -6.07 16 22 C -0.13 -2.62 4.95 -26.73 -0.13 -2.75 16 23 C -0.10 -2.22 5.29 -26.73 -0.14 -2.37 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.03 0.82 8.09 -51.93 -0.42 0.40 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 1.46 6.52 -51.93 -0.34 1.12 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.08 7.80 -51.92 -0.40 0.68 16 31 H 0.34 5.66 8.47 -39.29 -0.33 5.33 16 32 H 0.07 0.98 7.78 -51.93 -0.40 0.58 16 33 H 0.04 0.48 7.30 -51.93 -0.38 0.10 16 34 H 0.12 1.31 8.04 -52.48 -0.42 0.89 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 36 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 37 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 38 H 0.38 2.76 9.06 45.56 0.41 3.18 16 39 H 0.03 0.52 7.46 -51.93 -0.39 0.14 16 40 H 0.07 1.62 7.20 -51.93 -0.37 1.24 16 41 H 0.02 0.37 8.14 -51.92 -0.42 -0.06 16 42 H 0.07 1.81 6.90 -51.93 -0.36 1.45 16 LS Contribution 333.02 15.07 5.02 5.02 Total: -1.00 -29.83 333.02 -9.79 -39.62 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -5.84 Total: 6.64 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -3.70 Total: -24.95 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.00 Total: -36.55 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.25 Total: -6.07 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.83 -9.79 -39.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173326050.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.693 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds