Wall clock time and date at job start Mon Mar 30 2020 01:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99765 * 2 1 4 4 H 1.48501 * 109.47290 * 274.99133 * 3 2 1 5 5 H 1.48503 * 109.47352 * 34.99087 * 3 2 1 6 6 H 1.48498 * 109.47058 * 154.98794 * 3 2 1 7 7 C 1.37873 * 120.00400 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00532 * 189.54830 * 7 2 1 9 9 C 1.50702 * 119.99618 * 9.55221 * 7 2 1 10 10 C 1.53003 * 109.46933 * 185.42739 * 9 7 2 11 11 C 1.53002 * 109.46945 * 299.99580 * 10 9 7 12 12 C 1.53005 * 109.47271 * 300.00268 * 11 10 9 13 13 N 1.46894 * 109.47416 * 180.02562 * 12 11 10 14 14 C 1.46892 * 111.00365 * 154.99774 * 13 12 11 15 15 C 1.50699 * 109.47639 * 179.97438 * 14 13 12 16 16 C 1.38158 * 120.03125 * 260.00425 * 15 14 13 17 17 C 1.38253 * 120.05750 * 179.97438 * 16 15 14 18 18 C 1.38286 * 120.11053 * 0.02562 * 17 16 15 19 19 C 1.38132 * 120.05492 * 0.02562 * 18 17 16 20 20 C 1.38711 * 120.02302 * 79.72018 * 15 14 13 21 21 O 1.35899 * 120.05815 * 0.02562 * 20 15 14 22 22 C 1.53001 * 109.47012 * 59.99840 * 12 11 10 23 23 C 1.52996 * 109.47360 * 65.42367 * 9 7 2 24 24 H 0.96998 * 119.99661 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47144 * 305.42218 * 9 7 2 26 26 H 1.08999 * 109.46753 * 180.02562 * 10 9 7 27 27 H 1.08993 * 109.47273 * 59.99485 * 10 9 7 28 28 H 1.08998 * 109.46901 * 59.99921 * 11 10 9 29 29 H 1.08996 * 109.46907 * 180.02562 * 11 10 9 30 30 H 1.09008 * 109.46989 * 300.00212 * 12 11 10 31 31 H 1.00906 * 110.99921 * 278.95377 * 13 12 11 32 32 H 1.09003 * 109.47719 * 300.00543 * 14 13 12 33 33 H 1.09002 * 109.47155 * 59.99737 * 14 13 12 34 34 H 1.08004 * 119.97413 * 359.97438 * 16 15 14 35 35 H 1.07994 * 119.94406 * 179.97438 * 17 16 15 36 36 H 1.07993 * 119.97359 * 180.02562 * 18 17 16 37 37 H 1.07996 * 120.02486 * 179.97438 * 19 18 17 38 38 H 0.96704 * 114.00407 * 89.99664 * 21 20 15 39 39 H 1.09002 * 109.46866 * 180.02562 * 22 12 11 40 40 H 1.08998 * 109.47440 * 60.00174 * 22 12 11 41 41 H 1.09008 * 109.47082 * 180.02562 * 23 9 7 42 42 H 1.09001 * 109.47366 * 299.99580 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3912 2.1074 -1.3948 5 1 1.5033 2.6200 0.8029 6 1 3.5954 1.4121 0.5920 7 6 2.0047 -1.1940 0.0005 8 1 3.0734 -1.2004 0.1557 9 6 1.2668 -2.4901 -0.2155 10 6 2.2326 -3.6630 -0.0345 11 6 3.3703 -3.5482 -1.0512 12 6 2.7931 -3.5766 -2.4679 13 7 3.8854 -3.4671 -3.4439 14 6 3.5029 -4.0624 -4.7312 15 6 4.6455 -3.9310 -5.7049 16 6 4.6341 -2.9259 -6.6528 17 6 5.6823 -2.8044 -7.5460 18 6 6.7444 -3.6885 -7.4936 19 6 6.7601 -4.6957 -6.5485 20 6 5.7125 -4.8154 -5.6464 21 8 5.7286 -5.8016 -4.7116 22 6 1.8273 -2.4038 -2.6487 23 6 0.6897 -2.5185 -1.6321 24 1 -0.4849 0.8401 -0.0004 25 1 0.4563 -2.5719 0.5088 26 1 1.6990 -4.6004 -0.1912 27 1 2.6438 -3.6427 0.9746 28 1 3.9039 -2.6107 -0.8950 29 1 4.0580 -4.3840 -0.9226 30 1 2.2594 -4.5142 -2.6241 31 1 4.1712 -2.5064 -3.5605 32 1 3.2665 -5.1168 -4.5880 33 1 2.6286 -3.5445 -5.1255 34 1 3.8055 -2.2344 -6.6960 35 1 5.6712 -2.0184 -8.2864 36 1 7.5622 -3.5913 -8.1921 37 1 7.5895 -5.3861 -6.5082 38 1 5.3168 -6.6267 -5.0030 39 1 1.4158 -2.4243 -3.6579 40 1 2.3609 -1.4663 -2.4925 41 1 0.1556 -3.4559 -1.7882 42 1 0.0016 -1.6830 -1.7610 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173326050.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:11 Heat of formation + Delta-G solvation = -56.696756 kcal Electronic energy + Delta-G solvation = -21388.590630 eV Core-core repulsion = 18331.658305 eV Total energy + Delta-G solvation = -3056.932324 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.81348 -39.70983 -37.45166 -36.38365 -34.18809 -32.34902 -31.28182 -30.74203 -29.38035 -26.88436 -25.49907 -23.47841 -23.15122 -22.22641 -22.11088 -20.56500 -19.17325 -17.86507 -17.10855 -16.85408 -16.65527 -16.41613 -15.82696 -15.67536 -15.18197 -14.94045 -14.72106 -14.51707 -14.14162 -13.68653 -13.51030 -13.23569 -13.11935 -12.91859 -12.83596 -12.70564 -12.60618 -12.41983 -12.24004 -12.12581 -11.75281 -11.47640 -11.25288 -10.97380 -10.69480 -10.58058 -10.33105 -9.80325 -9.45856 -9.13454 -8.08019 -6.11916 0.36130 0.41446 1.38159 1.41029 1.49893 2.45271 2.72200 3.23658 3.39607 3.46694 3.87079 3.98188 4.04421 4.19724 4.25347 4.34790 4.48660 4.58910 4.62453 4.69202 4.71971 4.78473 4.87366 4.88587 4.97842 5.04984 5.10130 5.13203 5.27434 5.39482 5.47099 5.54242 5.57304 5.58966 5.62658 5.66438 5.72561 5.95472 5.98474 6.12424 6.25274 6.45538 6.51986 6.98048 6.98734 7.52697 9.01308 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022126 B = 0.004372 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.156915 B = 6402.266835 C = 7018.673991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.015 3.985 3 Si 0.937 3.063 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.505 4.505 8 H 0.053 0.947 9 C 0.037 3.963 10 C -0.101 4.101 11 C -0.084 4.084 12 C 0.109 3.891 13 N -0.675 5.675 14 C 0.109 3.891 15 C -0.124 4.124 16 C -0.110 4.110 17 C -0.136 4.136 18 C -0.105 4.105 19 C -0.160 4.160 20 C 0.117 3.883 21 O -0.501 6.501 22 C -0.119 4.119 23 C -0.091 4.091 24 H 0.257 0.743 25 H -0.008 1.008 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.335 0.665 32 H 0.080 0.920 33 H 0.035 0.965 34 H 0.128 0.872 35 H 0.144 0.856 36 H 0.150 0.850 37 H 0.140 0.860 38 H 0.401 0.599 39 H 0.045 0.955 40 H 0.047 0.953 41 H 0.033 0.967 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.719 -9.980 -16.577 22.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.183 4.183 3 Si 0.764 3.236 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.193 1.193 7 C -0.543 4.543 8 H 0.071 0.929 9 C 0.019 3.981 10 C -0.139 4.139 11 C -0.123 4.123 12 C -0.001 4.001 13 N -0.304 5.304 14 C -0.020 4.020 15 C -0.125 4.125 16 C -0.129 4.129 17 C -0.154 4.154 18 C -0.123 4.123 19 C -0.178 4.178 20 C 0.071 3.929 21 O -0.313 6.313 22 C -0.158 4.158 23 C -0.130 4.130 24 H 0.066 0.934 25 H 0.010 0.990 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.152 0.848 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.146 0.854 35 H 0.162 0.838 36 H 0.168 0.832 37 H 0.158 0.842 38 H 0.259 0.741 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 11.183 -10.040 -16.001 21.952 hybrid contribution -0.955 1.552 -0.192 1.832 sum 10.229 -8.488 -16.193 20.950 Atomic orbital electron populations 1.70093 1.07195 1.26745 1.52223 1.25606 0.95320 1.01820 0.95510 0.85862 0.79134 0.80719 0.77927 1.20411 1.21437 1.19346 1.21414 0.93832 0.91878 1.47161 0.92919 1.18688 0.93575 0.93180 0.92682 1.21459 0.96943 0.97517 0.97961 1.21249 0.96948 1.00759 0.93296 1.21359 0.89677 0.96954 0.92083 1.60670 1.37636 1.23589 1.08503 1.20692 0.93242 1.00362 0.87687 1.20271 0.96552 0.98051 0.97644 1.21222 0.99581 0.97041 0.95020 1.21425 0.93977 1.00253 0.99739 1.21365 0.98821 0.93988 0.98156 1.21676 0.99428 1.01182 0.95536 1.18477 0.93515 0.91565 0.89294 1.84869 1.82419 1.24622 1.39386 1.21937 0.97629 0.99164 0.97035 1.21236 0.96806 0.98040 0.96931 0.93422 0.99000 0.93068 0.93785 0.93459 0.92228 0.90951 0.84773 0.90156 0.94702 0.85436 0.83789 0.83214 0.84207 0.74073 0.93680 0.93437 0.94829 0.94678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.31 12.16 21.45 0.26 -54.05 16 2 C 0.02 0.85 5.20 84.65 0.44 1.29 16 3 Si 0.94 44.22 29.55 68.60 2.03 46.25 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.50 -27.42 6.63 25.60 0.17 -27.25 16 8 H 0.05 2.86 6.53 -2.91 -0.02 2.84 16 9 C 0.04 1.86 2.45 -11.54 -0.03 1.84 16 10 C -0.10 -4.18 5.42 30.60 0.17 -4.01 16 11 C -0.08 -3.21 5.30 30.60 0.16 -3.05 16 12 C 0.11 3.77 2.47 44.92 0.11 3.88 16 13 N -0.68 -20.93 6.24 -495.59 -3.09 -24.02 16 14 C 0.11 2.81 5.27 85.56 0.45 3.26 16 15 C -0.12 -2.96 5.41 -19.77 -0.11 -3.07 16 16 C -0.11 -2.34 9.66 22.25 0.22 -2.12 16 17 C -0.14 -2.39 10.04 22.28 0.22 -2.17 16 18 C -0.11 -1.73 10.04 22.26 0.22 -1.51 16 19 C -0.16 -3.04 9.99 22.37 0.22 -2.81 16 20 C 0.12 2.66 6.68 22.51 0.15 2.81 16 21 O -0.50 -11.20 12.74 -92.41 -1.18 -12.37 16 22 C -0.12 -4.72 4.95 30.60 0.15 -4.57 16 23 C -0.09 -4.23 5.29 30.59 0.16 -4.07 16 24 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 25 H -0.01 -0.47 8.09 -2.39 -0.02 -0.49 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.05 1.99 6.52 -2.39 -0.02 1.98 16 29 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.07 2.39 7.80 -2.38 -0.02 2.37 16 31 H 0.33 10.87 8.47 -89.69 -0.76 10.11 16 32 H 0.08 1.96 7.78 -2.39 -0.02 1.94 16 33 H 0.03 0.90 7.30 -2.39 -0.02 0.88 16 34 H 0.13 2.51 8.04 -2.91 -0.02 2.49 16 35 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 36 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 37 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 38 H 0.40 5.10 9.06 -74.05 -0.67 4.43 16 39 H 0.04 1.63 7.46 -2.39 -0.02 1.61 16 40 H 0.05 2.12 7.20 -2.39 -0.02 2.11 16 41 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.03 1.85 6.90 -2.39 -0.02 1.83 16 Total: -1.00 -64.20 333.02 0.32 -63.88 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -0.41 Total: 21.87 kcal Atomic # 6 Polarization: -44.26 SS G_CDS: 2.71 Total: -41.55 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -2.83 Total: -78.07 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -1.18 Total: -12.37 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -64.20 0.32 -63.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173326050.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.181 kcal (2) G-P(sol) polarization free energy of solvation -64.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds