Wall clock time and date at job start Mon Mar 30 2020 01:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00264 * 2 1 4 4 H 1.48499 * 109.47162 * 270.00120 * 3 2 1 5 5 H 1.48504 * 109.46953 * 29.99639 * 3 2 1 6 6 H 1.48499 * 109.47394 * 149.99812 * 3 2 1 7 7 C 1.37884 * 119.99656 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99521 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99741 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47000 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47544 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47033 * 60.00093 * 11 10 9 13 13 N 1.46903 * 109.47091 * 60.00123 * 12 11 10 14 14 C 1.46893 * 110.99924 * 154.99688 * 13 12 11 15 15 C 1.50706 * 109.47176 * 179.97438 * 14 13 12 16 16 C 1.38291 * 119.97268 * 269.73395 * 15 14 13 17 17 C 1.38243 * 120.10951 * 179.72559 * 16 15 14 18 18 C 1.38172 * 120.05349 * 0.54237 * 17 16 15 19 19 C 1.38708 * 119.94502 * 359.73153 * 18 17 16 20 20 O 1.35896 * 120.05654 * 179.97438 * 19 18 17 21 21 C 1.38119 * 119.96888 * 90.00317 * 15 14 13 22 22 C 1.52999 * 109.47154 * 300.00095 * 12 11 10 23 23 C 1.52999 * 109.47031 * 60.00943 * 9 7 2 24 24 H 0.97003 * 119.99712 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47649 * 300.00118 * 9 7 2 26 26 H 1.09004 * 109.46908 * 60.00409 * 10 9 7 27 27 H 1.09004 * 109.47491 * 300.00751 * 10 9 7 28 28 H 1.09004 * 109.47156 * 300.00145 * 11 10 9 29 29 H 1.09003 * 109.47047 * 180.02562 * 11 10 9 30 30 H 1.08999 * 109.46957 * 180.02562 * 12 11 10 31 31 H 1.00904 * 110.99923 * 31.04770 * 13 12 11 32 32 H 1.09001 * 109.46739 * 60.00281 * 14 13 12 33 33 H 1.09000 * 109.47767 * 300.00540 * 14 13 12 34 34 H 1.07994 * 119.94166 * 359.97356 * 16 15 14 35 35 H 1.07992 * 119.97620 * 180.24901 * 17 16 15 36 36 H 1.08004 * 120.02790 * 179.74951 * 18 17 16 37 37 H 0.96701 * 114.00153 * 270.01781 * 20 19 18 38 38 H 1.08000 * 120.03046 * 359.97405 * 21 15 14 39 39 H 1.08996 * 109.46853 * 179.97438 * 22 12 11 40 40 H 1.08994 * 109.47047 * 299.99981 * 22 12 11 41 41 H 1.09003 * 109.47006 * 299.99115 * 23 9 7 42 42 H 1.08994 * 109.47577 * 59.99132 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2451 -3.6622 0.0027 11 6 1.4801 -4.9871 0.0033 12 6 0.6009 -5.0689 -1.2463 13 7 1.4459 -4.9919 -2.4455 14 6 0.7916 -5.6349 -3.5927 15 6 1.6860 -5.5357 -4.8016 16 6 1.5806 -4.4501 -5.6517 17 6 2.4035 -4.3534 -6.7584 18 6 3.3258 -5.3473 -7.0238 19 6 3.4295 -6.4401 -6.1758 20 8 4.3355 -7.4192 -6.4350 21 6 2.6063 -6.5320 -5.0626 22 6 -0.3933 -3.9060 -1.2473 23 6 0.3710 -2.5810 -1.2473 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5563 0.8919 26 1 2.8717 -3.6037 0.8928 27 1 2.8719 -3.6052 -0.8872 28 1 0.8531 -5.0443 0.8931 29 1 2.1884 -5.8156 0.0045 30 1 0.0556 -6.0127 -1.2456 31 1 2.3545 -5.3960 -2.2741 32 1 -0.1544 -5.1343 -3.7989 33 1 0.6050 -6.6841 -3.3634 34 1 0.8571 -3.6745 -5.4485 35 1 2.3221 -3.5026 -7.4185 36 1 3.9657 -5.2733 -7.8908 37 1 3.9948 -8.1331 -6.9914 38 1 2.6855 -7.3816 -4.4006 39 1 -1.0193 -3.9640 -2.1377 40 1 -1.0202 -3.9632 -0.3576 41 1 -0.3373 -1.7525 -1.2476 42 1 0.9973 -2.5238 -2.1374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173326167.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:50 Heat of formation + Delta-G solvation = -36.419916 kcal Electronic energy + Delta-G solvation = -21273.349108 eV Core-core repulsion = 18217.296053 eV Total energy + Delta-G solvation = -3056.053055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.84431 -38.29664 -36.89794 -34.48703 -32.52299 -30.84203 -29.80894 -29.63796 -28.36658 -25.14542 -24.12225 -22.60310 -21.62038 -21.13588 -20.47104 -18.22054 -18.01445 -16.44104 -16.20099 -15.91443 -15.43584 -14.81349 -14.70413 -14.47430 -14.23617 -13.80025 -13.18589 -12.77707 -12.59580 -12.36028 -12.13244 -12.04455 -11.84956 -11.42464 -11.38706 -11.15051 -11.08157 -10.76351 -10.57183 -10.41773 -10.15127 -9.98624 -9.66296 -9.19851 -8.93149 -8.77959 -8.61391 -8.45842 -8.13233 -7.90497 -5.84490 -3.89259 1.22298 1.28053 3.38228 3.44470 3.48187 3.57272 4.06183 4.54485 4.62957 4.82294 4.86234 5.07920 5.30258 5.38431 5.44662 5.47013 5.51995 5.60896 5.73097 5.77267 5.84105 5.99729 6.21562 6.32559 6.38022 6.40198 6.46228 6.54831 6.59448 6.62977 6.77185 6.84839 6.93255 7.10076 7.34852 7.45435 7.52481 7.60361 7.72535 7.78862 7.92423 8.25999 8.35813 8.65609 9.14858 9.74049 11.20747 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018730 B = 0.004425 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.540383 B = 6326.630899 C = 7026.479926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.506 4.506 8 H 0.051 0.949 9 C 0.052 3.948 10 C -0.102 4.102 11 C -0.118 4.118 12 C 0.094 3.906 13 N -0.664 5.664 14 C 0.098 3.902 15 C -0.058 4.058 16 C -0.101 4.101 17 C -0.105 4.105 18 C -0.149 4.149 19 C 0.098 3.902 20 O -0.501 6.501 21 C -0.141 4.141 22 C -0.106 4.106 23 C -0.097 4.097 24 H 0.257 0.743 25 H 0.017 0.983 26 H 0.038 0.962 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.025 0.975 31 H 0.337 0.663 32 H 0.082 0.918 33 H 0.031 0.969 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.386 0.614 38 H 0.123 0.877 39 H 0.038 0.962 40 H 0.049 0.951 41 H 0.081 0.919 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.450 -14.392 -12.046 18.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.544 4.544 8 H 0.069 0.931 9 C 0.034 3.966 10 C -0.140 4.140 11 C -0.156 4.156 12 C -0.015 4.015 13 N -0.296 5.296 14 C -0.031 4.031 15 C -0.058 4.058 16 C -0.120 4.120 17 C -0.123 4.123 18 C -0.168 4.168 19 C 0.053 3.947 20 O -0.310 6.310 21 C -0.160 4.160 22 C -0.144 4.144 23 C -0.135 4.135 24 H 0.067 0.933 25 H 0.035 0.965 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.155 0.845 32 H 0.100 0.900 33 H 0.049 0.951 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.241 0.759 38 H 0.141 0.859 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.099 0.901 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.448 -13.289 -11.834 17.854 hybrid contribution 0.330 -0.322 -0.087 0.469 sum 1.778 -13.611 -11.921 18.181 Atomic orbital electron populations 1.69899 1.05772 1.25942 1.51535 1.24941 0.94781 0.98773 0.95497 0.86701 0.79912 0.84009 0.77974 1.20839 1.21445 1.20102 1.21249 0.92773 0.90929 1.49458 0.93057 1.18598 0.92574 0.91259 0.94207 1.21542 0.98653 0.93877 0.99937 1.21746 0.98248 0.98939 0.96680 1.21540 0.94176 0.96761 0.89001 1.60483 1.05402 1.59691 1.04025 1.20940 0.96662 0.96686 0.88839 1.19748 0.96259 0.93877 0.95943 1.21165 0.99579 0.97326 0.93895 1.21060 0.95282 0.98280 0.97642 1.21380 0.99807 0.95445 1.00184 1.18410 0.90941 0.90374 0.94930 1.84847 1.38100 1.34744 1.73337 1.21289 0.95988 1.00376 0.98370 1.21609 0.96459 0.97148 0.99155 1.21422 0.99204 0.93674 0.99232 0.93345 0.96495 0.94289 0.92509 0.92114 0.94013 0.95690 0.84476 0.89984 0.95099 0.85261 0.85605 0.85799 0.75903 0.85909 0.94362 0.93212 0.90069 0.93335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.92 11.32 55.43 0.63 -25.29 16 2 C 0.06 1.71 5.30 -17.81 -0.09 1.61 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -14.23 8.56 -34.44 -0.29 -14.52 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.31 2.10 -91.77 -0.19 1.12 16 10 C -0.10 -2.16 4.98 -26.73 -0.13 -2.30 16 11 C -0.12 -2.05 5.30 -26.73 -0.14 -2.19 16 12 C 0.09 1.56 2.82 -67.71 -0.19 1.37 16 13 N -0.66 -10.42 4.81 -107.99 -0.52 -10.94 16 14 C 0.10 1.29 5.61 -4.98 -0.03 1.26 16 15 C -0.06 -0.74 5.39 -104.64 -0.56 -1.31 16 16 C -0.10 -1.30 9.70 -39.56 -0.38 -1.68 16 17 C -0.10 -1.20 10.04 -39.60 -0.40 -1.60 16 18 C -0.15 -1.68 9.99 -39.43 -0.39 -2.07 16 19 C 0.10 1.15 6.70 -39.22 -0.26 0.88 16 20 O -0.50 -5.17 13.50 -19.41 -0.26 -5.43 16 21 C -0.14 -1.70 9.64 -39.43 -0.38 -2.08 16 22 C -0.11 -2.04 5.53 -26.75 -0.15 -2.19 16 23 C -0.10 -2.31 4.82 -26.75 -0.13 -2.44 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 1.22 7.48 -51.93 -0.39 0.83 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 30 H 0.03 0.38 7.80 -51.93 -0.41 -0.03 16 31 H 0.34 5.12 8.18 -39.29 -0.32 4.80 16 32 H 0.08 1.11 7.38 -51.93 -0.38 0.73 16 33 H 0.03 0.37 8.00 -51.93 -0.42 -0.05 16 34 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 36 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 37 H 0.39 1.98 9.06 45.56 0.41 2.40 16 38 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.04 0.69 7.45 -51.93 -0.39 0.30 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 42 H 0.05 1.19 7.60 -51.93 -0.39 0.80 16 LS Contribution 334.99 15.07 5.05 5.05 Total: -1.00 -30.66 334.99 -9.81 -40.46 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.94 Total: 5.48 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -3.74 Total: -26.14 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.11 Total: -36.23 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.26 Total: -5.43 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.66 -9.81 -40.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173326167.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.044 kcal (2) G-P(sol) polarization free energy of solvation -30.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds