Wall clock time and date at job start Mon Mar 30 2020 01:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00264 * 2 1 4 4 H 1.48499 * 109.47162 * 270.00120 * 3 2 1 5 5 H 1.48504 * 109.46953 * 29.99639 * 3 2 1 6 6 H 1.48499 * 109.47394 * 149.99812 * 3 2 1 7 7 C 1.37884 * 119.99656 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99521 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99741 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47000 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47544 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47033 * 60.00093 * 11 10 9 13 13 N 1.46903 * 109.47091 * 60.00123 * 12 11 10 14 14 C 1.46893 * 110.99924 * 154.99688 * 13 12 11 15 15 C 1.50706 * 109.47176 * 179.97438 * 14 13 12 16 16 C 1.38291 * 119.97268 * 269.73395 * 15 14 13 17 17 C 1.38243 * 120.10951 * 179.72559 * 16 15 14 18 18 C 1.38172 * 120.05349 * 0.54237 * 17 16 15 19 19 C 1.38708 * 119.94502 * 359.73153 * 18 17 16 20 20 O 1.35896 * 120.05654 * 179.97438 * 19 18 17 21 21 C 1.38119 * 119.96888 * 90.00317 * 15 14 13 22 22 C 1.52999 * 109.47154 * 300.00095 * 12 11 10 23 23 C 1.52999 * 109.47031 * 60.00943 * 9 7 2 24 24 H 0.97003 * 119.99712 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47649 * 300.00118 * 9 7 2 26 26 H 1.09004 * 109.46908 * 60.00409 * 10 9 7 27 27 H 1.09004 * 109.47491 * 300.00751 * 10 9 7 28 28 H 1.09004 * 109.47156 * 300.00145 * 11 10 9 29 29 H 1.09003 * 109.47047 * 180.02562 * 11 10 9 30 30 H 1.08999 * 109.46957 * 180.02562 * 12 11 10 31 31 H 1.00904 * 110.99923 * 31.04770 * 13 12 11 32 32 H 1.09001 * 109.46739 * 60.00281 * 14 13 12 33 33 H 1.09000 * 109.47767 * 300.00540 * 14 13 12 34 34 H 1.07994 * 119.94166 * 359.97356 * 16 15 14 35 35 H 1.07992 * 119.97620 * 180.24901 * 17 16 15 36 36 H 1.08004 * 120.02790 * 179.74951 * 18 17 16 37 37 H 0.96701 * 114.00153 * 270.01781 * 20 19 18 38 38 H 1.08000 * 120.03046 * 359.97405 * 21 15 14 39 39 H 1.08996 * 109.46853 * 179.97438 * 22 12 11 40 40 H 1.08994 * 109.47047 * 299.99981 * 22 12 11 41 41 H 1.09003 * 109.47006 * 299.99115 * 23 9 7 42 42 H 1.08994 * 109.47577 * 59.99132 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2451 -3.6622 0.0027 11 6 1.4801 -4.9871 0.0033 12 6 0.6009 -5.0689 -1.2463 13 7 1.4459 -4.9919 -2.4455 14 6 0.7916 -5.6349 -3.5927 15 6 1.6860 -5.5357 -4.8016 16 6 1.5806 -4.4501 -5.6517 17 6 2.4035 -4.3534 -6.7584 18 6 3.3258 -5.3473 -7.0238 19 6 3.4295 -6.4401 -6.1758 20 8 4.3355 -7.4192 -6.4350 21 6 2.6063 -6.5320 -5.0626 22 6 -0.3933 -3.9060 -1.2473 23 6 0.3710 -2.5810 -1.2473 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5563 0.8919 26 1 2.8717 -3.6037 0.8928 27 1 2.8719 -3.6052 -0.8872 28 1 0.8531 -5.0443 0.8931 29 1 2.1884 -5.8156 0.0045 30 1 0.0556 -6.0127 -1.2456 31 1 2.3545 -5.3960 -2.2741 32 1 -0.1544 -5.1343 -3.7989 33 1 0.6050 -6.6841 -3.3634 34 1 0.8571 -3.6745 -5.4485 35 1 2.3221 -3.5026 -7.4185 36 1 3.9657 -5.2733 -7.8908 37 1 3.9948 -8.1331 -6.9914 38 1 2.6855 -7.3816 -4.4006 39 1 -1.0193 -3.9640 -2.1377 40 1 -1.0202 -3.9632 -0.3576 41 1 -0.3373 -1.7525 -1.2476 42 1 0.9973 -2.5238 -2.1374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173326167.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:49 Heat of formation + Delta-G solvation = -55.451772 kcal Electronic energy + Delta-G solvation = -21274.174391 eV Core-core repulsion = 18217.296053 eV Total energy + Delta-G solvation = -3056.878338 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.74378 -39.73329 -37.81598 -35.97457 -34.24419 -32.16887 -31.30278 -30.75769 -29.85094 -26.69395 -25.65732 -23.48101 -23.17373 -22.24158 -22.13533 -19.71214 -18.98695 -18.33447 -17.32126 -16.86784 -16.67985 -16.38524 -15.96179 -15.77763 -15.60658 -14.87078 -14.62373 -14.21959 -14.10400 -13.82750 -13.44961 -13.23451 -13.08185 -12.92928 -12.82431 -12.68669 -12.49551 -12.37148 -12.25391 -11.86660 -11.77669 -11.56052 -11.32802 -11.09396 -10.65819 -10.36834 -10.23291 -9.82760 -9.51353 -9.10134 -8.00974 -6.14016 0.33058 0.39655 1.40919 1.41649 1.51539 2.46801 2.68563 3.24070 3.26149 3.52642 3.85767 3.97740 4.06814 4.18239 4.24282 4.33428 4.39211 4.51549 4.64094 4.71529 4.73282 4.85034 4.95443 4.96017 4.99401 5.04647 5.10527 5.17703 5.22476 5.37307 5.45705 5.50282 5.53936 5.66025 5.70548 5.72976 5.87440 5.93807 6.20526 6.26343 6.34703 6.53751 6.61728 6.89255 6.99728 7.52708 9.02099 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018730 B = 0.004425 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.540383 B = 6326.630899 C = 7026.479926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 0.947 3.053 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.530 4.530 8 H 0.044 0.956 9 C 0.048 3.952 10 C -0.094 4.094 11 C -0.112 4.112 12 C 0.103 3.897 13 N -0.680 5.680 14 C 0.102 3.898 15 C -0.066 4.066 16 C -0.123 4.123 17 C -0.108 4.108 18 C -0.154 4.154 19 C 0.096 3.904 20 O -0.510 6.510 21 C -0.147 4.147 22 C -0.100 4.100 23 C -0.083 4.083 24 H 0.257 0.743 25 H -0.016 1.016 26 H 0.033 0.967 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.342 0.658 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.121 0.879 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.409 0.591 38 H 0.135 0.865 39 H 0.050 0.950 40 H 0.044 0.956 41 H 0.042 0.958 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.378 -15.973 -12.971 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.773 3.227 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.569 4.569 8 H 0.063 0.937 9 C 0.030 3.970 10 C -0.131 4.131 11 C -0.150 4.150 12 C -0.006 4.006 13 N -0.313 5.313 14 C -0.026 4.026 15 C -0.067 4.067 16 C -0.141 4.141 17 C -0.126 4.126 18 C -0.173 4.173 19 C 0.052 3.948 20 O -0.323 6.323 21 C -0.166 4.166 22 C -0.139 4.139 23 C -0.121 4.121 24 H 0.066 0.934 25 H 0.002 0.998 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.161 0.839 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.139 0.861 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.268 0.732 38 H 0.152 0.848 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.379 -14.897 -12.773 19.767 hybrid contribution 0.069 0.165 0.157 0.238 sum 2.448 -14.732 -12.615 19.549 Atomic orbital electron populations 1.70045 1.07009 1.26651 1.51945 1.25686 0.95624 1.02054 0.95196 0.85731 0.78819 0.80032 0.78112 1.20327 1.20875 1.19526 1.21647 0.92751 0.92770 1.49686 0.93734 1.18586 0.93081 0.92063 0.93278 1.21366 0.97819 0.94544 0.99410 1.21687 0.98610 0.97495 0.97183 1.21375 0.93635 0.96450 0.89134 1.60362 1.05725 1.60944 1.04261 1.20912 0.96175 0.97447 0.88073 1.19747 0.96772 0.94265 0.95914 1.21260 1.00300 0.97587 0.94971 1.21282 0.94913 0.98959 0.97412 1.21627 0.99821 0.95102 1.00748 1.18532 0.90635 0.90835 0.94798 1.84785 1.38136 1.35312 1.74043 1.21415 0.95878 1.00517 0.98793 1.21507 0.96890 0.95964 0.99490 1.21123 0.98151 0.95033 0.97791 0.93360 0.99772 0.94808 0.92966 0.92116 0.90767 0.92715 0.83925 0.90714 0.93079 0.86139 0.83957 0.83992 0.73238 0.84750 0.93149 0.93755 0.93957 0.94697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.78 11.32 21.45 0.24 -54.54 16 2 C 0.01 0.71 5.30 84.66 0.45 1.16 16 3 Si 0.95 45.38 29.54 68.60 2.03 47.41 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 5 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.53 -30.60 8.56 25.60 0.22 -30.38 16 8 H 0.04 2.56 7.74 -2.91 -0.02 2.53 16 9 C 0.05 2.50 2.10 -11.54 -0.02 2.47 16 10 C -0.09 -3.93 4.98 30.59 0.15 -3.78 16 11 C -0.11 -3.65 5.30 30.59 0.16 -3.48 16 12 C 0.10 3.20 2.82 44.92 0.13 3.33 16 13 N -0.68 -20.13 4.81 -495.57 -2.39 -22.51 16 14 C 0.10 2.51 5.61 85.56 0.48 2.99 16 15 C -0.07 -1.62 5.39 -19.88 -0.11 -1.73 16 16 C -0.12 -3.08 9.70 22.28 0.22 -2.87 16 17 C -0.11 -2.35 10.04 22.26 0.22 -2.12 16 18 C -0.15 -3.17 9.99 22.37 0.22 -2.95 16 19 C 0.10 2.05 6.70 22.51 0.15 2.21 16 20 O -0.51 -9.21 13.50 -92.38 -1.25 -10.46 16 21 C -0.15 -3.25 9.64 22.37 0.22 -3.03 16 22 C -0.10 -3.83 5.53 30.58 0.17 -3.66 16 23 C -0.08 -4.04 4.82 30.58 0.15 -3.89 16 24 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 25 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 26 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.05 2.22 7.48 -2.39 -0.02 2.20 16 28 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.07 1.98 8.12 -2.39 -0.02 1.96 16 30 H 0.06 1.44 7.80 -2.39 -0.02 1.42 16 31 H 0.34 9.60 8.18 -89.69 -0.73 8.86 16 32 H 0.07 1.93 7.38 -2.39 -0.02 1.91 16 33 H 0.05 1.06 8.00 -2.39 -0.02 1.04 16 34 H 0.12 3.14 8.06 -2.91 -0.02 3.11 16 35 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 36 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 37 H 0.41 3.06 9.06 -74.06 -0.67 2.39 16 38 H 0.13 2.58 8.06 -2.91 -0.02 2.55 16 39 H 0.05 1.78 7.45 -2.39 -0.02 1.76 16 40 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 41 H 0.04 2.37 6.07 -2.39 -0.01 2.36 16 42 H 0.03 1.75 7.60 -2.39 -0.02 1.73 16 Total: -1.00 -67.02 334.99 1.05 -65.97 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -0.39 Total: 19.87 kcal Atomic # 6 Polarization: -48.54 SS G_CDS: 2.80 Total: -45.74 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -2.14 Total: -77.05 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -1.25 Total: -10.46 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -67.02 1.05 -65.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173326167.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.522 kcal (2) G-P(sol) polarization free energy of solvation -67.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds