Wall clock time and date at job start Mon Mar 30 2020 01:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99813 * 2 1 4 4 H 1.48499 * 109.46896 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46932 * 299.99593 * 3 2 1 6 6 H 1.48497 * 109.47402 * 59.99514 * 3 2 1 7 7 C 1.37876 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99880 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00181 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47371 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47371 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47367 * 300.00546 * 11 10 9 13 13 N 1.46898 * 109.47127 * 179.97438 * 12 11 10 14 14 C 1.46898 * 111.00067 * 154.99916 * 13 12 11 15 15 O 1.42902 * 109.47154 * 94.99999 * 14 13 12 16 16 C 1.35898 * 116.99694 * 80.00301 * 15 14 13 17 17 C 1.38735 * 120.05254 * 179.97438 * 16 15 14 18 18 C 1.38144 * 119.94607 * 179.97438 * 17 16 15 19 19 C 1.38265 * 120.05233 * 359.97438 * 18 17 16 20 20 C 1.38269 * 120.11630 * 0.04162 * 19 18 17 21 21 C 1.38142 * 120.04900 * 359.95598 * 20 19 18 22 22 C 1.52997 * 109.47292 * 59.99784 * 12 11 10 23 23 C 1.53000 * 109.47006 * 299.99605 * 9 7 2 24 24 H 0.96996 * 120.00306 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47391 * 59.99612 * 9 7 2 26 26 H 1.09008 * 109.47083 * 59.99930 * 10 9 7 27 27 H 1.08993 * 109.47312 * 300.00499 * 10 9 7 28 28 H 1.09001 * 109.47520 * 179.97438 * 11 10 9 29 29 H 1.09004 * 109.46643 * 60.00652 * 11 10 9 30 30 H 1.09001 * 109.46603 * 299.99804 * 12 11 10 31 31 H 1.00896 * 111.00197 * 278.95487 * 13 12 11 32 32 H 1.09007 * 109.47185 * 334.99532 * 14 13 12 33 33 H 1.09007 * 109.47373 * 214.99927 * 14 13 12 34 34 H 1.08002 * 120.02704 * 359.70561 * 17 16 15 35 35 H 1.08001 * 119.97447 * 179.97438 * 18 17 16 36 36 H 1.08000 * 119.94053 * 179.97438 * 19 18 17 37 37 H 1.07992 * 119.97612 * 179.97438 * 20 19 18 38 38 H 1.08005 * 120.02748 * 180.02562 * 21 20 19 39 39 H 1.09004 * 109.47014 * 59.99713 * 22 12 11 40 40 H 1.08995 * 109.47471 * 180.02562 * 22 12 11 41 41 H 1.09008 * 109.46877 * 299.99720 * 23 9 7 42 42 H 1.08997 * 109.47293 * 59.99961 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 6 0.6011 -5.0678 1.2507 13 7 -0.1337 -6.3397 1.2509 14 6 -0.5002 -6.7357 2.6172 15 8 -1.8285 -6.2920 2.9017 16 6 -2.8485 -7.0480 2.4170 17 6 -4.1635 -6.6760 2.6561 18 6 -5.1987 -7.4458 2.1619 19 6 -4.9250 -8.5859 1.4291 20 6 -3.6154 -8.9590 1.1896 21 6 -2.5767 -8.1925 1.6816 22 6 -0.3931 -3.9049 1.2506 23 6 0.3711 -2.5800 1.2495 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 2.8721 -3.6043 0.8906 27 1 2.8721 -3.6043 -0.8893 28 1 2.1888 -5.8156 0.0007 29 1 0.8536 -5.0451 -0.8887 30 1 1.2281 -5.0098 2.1404 31 1 -0.9490 -6.2864 0.6589 32 1 0.1937 -6.2827 3.3253 33 1 -0.4529 -7.8211 2.7060 34 1 -4.3777 -5.7877 3.2319 35 1 -6.2225 -7.1568 2.3482 36 1 -5.7357 -9.1866 1.0440 37 1 -3.4042 -9.8501 0.6173 38 1 -1.5538 -8.4841 1.4940 39 1 -1.0200 -3.9629 0.3607 40 1 -1.0193 -3.9622 2.1409 41 1 0.9976 -2.5221 2.1397 42 1 -0.3372 -1.7515 1.2491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:53 Heat of formation + Delta-G solvation = -29.851856 kcal Electronic energy + Delta-G solvation = -21234.631187 eV Core-core repulsion = 18178.862945 eV Total energy + Delta-G solvation = -3055.768242 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.31040 -38.28542 -37.19528 -34.21897 -32.12105 -31.04649 -29.93761 -29.65241 -28.51859 -25.35079 -23.79963 -22.71401 -21.81748 -21.51779 -20.67148 -18.87654 -18.28476 -16.64338 -16.28592 -15.94184 -15.63914 -15.10421 -14.59983 -14.45273 -13.60459 -13.56079 -13.42497 -13.29774 -13.07035 -12.67875 -12.32155 -12.18214 -11.80137 -11.61379 -11.51874 -11.27417 -10.99332 -10.91523 -10.73533 -10.41742 -10.28401 -10.15359 -9.95053 -9.34717 -9.10019 -9.06418 -8.63319 -8.44245 -8.26265 -8.14947 -5.94221 -4.00468 1.24156 1.36260 3.27671 3.31184 3.39365 3.43221 3.69521 4.29085 4.47112 4.72293 4.81049 4.96692 5.04133 5.26251 5.29596 5.35251 5.39068 5.47890 5.56254 5.67058 5.90778 5.93910 6.17040 6.20145 6.28662 6.29956 6.31937 6.42969 6.45627 6.64176 6.67076 6.70284 6.81193 6.91135 7.08226 7.17680 7.26429 7.36425 7.52492 7.58759 7.79317 8.06349 8.20336 8.51771 9.04274 9.64153 11.11132 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028767 B = 0.003698 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.110245 B = 7570.682579 C = 8113.578384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.108 4.108 11 C -0.101 4.101 12 C 0.087 3.913 13 N -0.690 5.690 14 C 0.217 3.783 15 O -0.339 6.339 16 C 0.134 3.866 17 C -0.155 4.155 18 C -0.083 4.083 19 C -0.164 4.164 20 C -0.081 4.081 21 C -0.209 4.209 22 C -0.141 4.141 23 C -0.105 4.105 24 H 0.258 0.742 25 H 0.023 0.977 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.348 0.652 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.135 0.865 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.031 0.969 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.954 -16.935 4.588 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.146 4.146 11 C -0.139 4.139 12 C -0.022 4.022 13 N -0.329 5.329 14 C 0.052 3.948 15 O -0.249 6.249 16 C 0.088 3.912 17 C -0.173 4.173 18 C -0.101 4.101 19 C -0.182 4.182 20 C -0.099 4.099 21 C -0.228 4.228 22 C -0.180 4.180 23 C -0.144 4.144 24 H 0.068 0.932 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.169 0.831 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.153 0.847 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.556 -17.031 4.732 18.853 hybrid contribution -0.164 1.423 0.073 1.434 sum -6.720 -15.608 4.805 17.660 Atomic orbital electron populations 1.69891 1.05847 1.26116 1.51120 1.24976 0.94821 0.98992 0.95286 0.86603 0.80188 0.84097 0.77503 1.19845 1.21114 1.21128 1.21287 0.92900 0.90816 1.49979 0.92779 1.18662 0.92631 0.91571 0.94194 1.21623 0.98612 0.94283 1.00110 1.21501 0.97849 0.98097 0.96495 1.21830 0.94899 0.86146 0.99302 1.61325 1.28660 1.34002 1.08937 1.23985 0.79741 0.99738 0.91386 1.86310 1.15504 1.50587 1.72501 1.19069 0.88521 0.90186 0.93428 1.20527 0.89834 1.02208 1.04773 1.20959 0.98564 0.94284 0.96327 1.21043 0.96664 0.98428 1.02110 1.20946 0.92374 0.98777 0.97823 1.21412 1.00810 0.96937 1.03656 1.22281 0.97858 0.97552 1.00303 1.21545 0.99440 0.94707 0.98665 0.93199 0.95845 0.93509 0.93337 0.93047 0.92787 0.90928 0.83079 0.87510 0.90506 0.85349 0.85615 0.86182 0.85965 0.84704 0.93073 0.93469 0.94975 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 11.32 55.43 0.63 -25.04 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.51 -14.12 8.56 -34.44 -0.29 -14.41 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.05 1.19 2.10 -91.77 -0.19 0.99 16 10 C -0.11 -2.24 5.14 -26.73 -0.14 -2.38 16 11 C -0.10 -1.78 5.53 -26.73 -0.15 -1.93 16 12 C 0.09 1.45 2.45 -67.72 -0.17 1.28 16 13 N -0.69 -9.67 6.30 -111.86 -0.70 -10.37 16 14 C 0.22 2.69 6.27 60.06 0.38 3.07 16 15 O -0.34 -4.78 9.70 -19.42 -0.19 -4.97 16 16 C 0.13 1.74 6.33 -39.22 -0.25 1.49 16 17 C -0.15 -1.89 9.99 -39.43 -0.39 -2.29 16 18 C -0.08 -0.86 10.04 -39.61 -0.40 -1.26 16 19 C -0.16 -1.60 10.04 -39.56 -0.40 -2.00 16 20 C -0.08 -0.82 10.04 -39.60 -0.40 -1.22 16 21 C -0.21 -2.40 8.43 -39.44 -0.33 -2.73 16 22 C -0.14 -2.75 5.17 -26.75 -0.14 -2.89 16 23 C -0.10 -2.47 4.98 -26.75 -0.13 -2.61 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.96 8.14 -51.92 -0.42 0.53 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.20 7.36 -51.93 -0.38 0.82 16 31 H 0.35 5.07 7.46 -39.29 -0.29 4.78 16 32 H 0.11 1.27 7.26 -51.93 -0.38 0.90 16 33 H 0.08 0.81 6.36 -51.93 -0.33 0.48 16 34 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.14 1.44 5.88 -52.48 -0.31 1.13 16 39 H 0.05 1.04 8.13 -51.93 -0.42 0.62 16 40 H 0.05 0.90 7.48 -51.93 -0.39 0.51 16 41 H 0.03 0.75 8.14 -51.92 -0.42 0.33 16 42 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 LS Contribution 331.70 15.07 5.00 5.00 Total: -1.00 -28.85 331.70 -9.97 -38.82 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -6.59 Total: 5.43 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -3.10 Total: -25.29 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: -0.08 Total: -35.41 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.19 Total: -4.97 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.85 -9.97 -38.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.968 kcal (2) G-P(sol) polarization free energy of solvation -28.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds