Wall clock time and date at job start Mon Mar 30 2020 01:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99813 * 2 1 4 4 H 1.48499 * 109.46896 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46932 * 299.99593 * 3 2 1 6 6 H 1.48497 * 109.47402 * 59.99514 * 3 2 1 7 7 C 1.37876 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99880 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00181 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47371 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47371 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47367 * 300.00546 * 11 10 9 13 13 N 1.46898 * 109.47127 * 179.97438 * 12 11 10 14 14 C 1.46898 * 111.00067 * 154.99916 * 13 12 11 15 15 O 1.42902 * 109.47154 * 94.99999 * 14 13 12 16 16 C 1.35898 * 116.99694 * 80.00301 * 15 14 13 17 17 C 1.38735 * 120.05254 * 179.97438 * 16 15 14 18 18 C 1.38144 * 119.94607 * 179.97438 * 17 16 15 19 19 C 1.38265 * 120.05233 * 359.97438 * 18 17 16 20 20 C 1.38269 * 120.11630 * 0.04162 * 19 18 17 21 21 C 1.38142 * 120.04900 * 359.95598 * 20 19 18 22 22 C 1.52997 * 109.47292 * 59.99784 * 12 11 10 23 23 C 1.53000 * 109.47006 * 299.99605 * 9 7 2 24 24 H 0.96996 * 120.00306 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47391 * 59.99612 * 9 7 2 26 26 H 1.09008 * 109.47083 * 59.99930 * 10 9 7 27 27 H 1.08993 * 109.47312 * 300.00499 * 10 9 7 28 28 H 1.09001 * 109.47520 * 179.97438 * 11 10 9 29 29 H 1.09004 * 109.46643 * 60.00652 * 11 10 9 30 30 H 1.09001 * 109.46603 * 299.99804 * 12 11 10 31 31 H 1.00896 * 111.00197 * 278.95487 * 13 12 11 32 32 H 1.09007 * 109.47185 * 334.99532 * 14 13 12 33 33 H 1.09007 * 109.47373 * 214.99927 * 14 13 12 34 34 H 1.08002 * 120.02704 * 359.70561 * 17 16 15 35 35 H 1.08001 * 119.97447 * 179.97438 * 18 17 16 36 36 H 1.08000 * 119.94053 * 179.97438 * 19 18 17 37 37 H 1.07992 * 119.97612 * 179.97438 * 20 19 18 38 38 H 1.08005 * 120.02748 * 180.02562 * 21 20 19 39 39 H 1.09004 * 109.47014 * 59.99713 * 22 12 11 40 40 H 1.08995 * 109.47471 * 180.02562 * 22 12 11 41 41 H 1.09008 * 109.46877 * 299.99720 * 23 9 7 42 42 H 1.08997 * 109.47293 * 59.99961 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 6 0.6011 -5.0678 1.2507 13 7 -0.1337 -6.3397 1.2509 14 6 -0.5002 -6.7357 2.6172 15 8 -1.8285 -6.2920 2.9017 16 6 -2.8485 -7.0480 2.4170 17 6 -4.1635 -6.6760 2.6561 18 6 -5.1987 -7.4458 2.1619 19 6 -4.9250 -8.5859 1.4291 20 6 -3.6154 -8.9590 1.1896 21 6 -2.5767 -8.1925 1.6816 22 6 -0.3931 -3.9049 1.2506 23 6 0.3711 -2.5800 1.2495 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 2.8721 -3.6043 0.8906 27 1 2.8721 -3.6043 -0.8893 28 1 2.1888 -5.8156 0.0007 29 1 0.8536 -5.0451 -0.8887 30 1 1.2281 -5.0098 2.1404 31 1 -0.9490 -6.2864 0.6589 32 1 0.1937 -6.2827 3.3253 33 1 -0.4529 -7.8211 2.7060 34 1 -4.3777 -5.7877 3.2319 35 1 -6.2225 -7.1568 2.3482 36 1 -5.7357 -9.1866 1.0440 37 1 -3.4042 -9.8501 0.6173 38 1 -1.5538 -8.4841 1.4940 39 1 -1.0200 -3.9629 0.3607 40 1 -1.0193 -3.9622 2.1409 41 1 0.9976 -2.5221 2.1397 42 1 -0.3372 -1.7515 1.2491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:52 Heat of formation + Delta-G solvation = -46.807865 kcal Electronic energy + Delta-G solvation = -21235.366455 eV Core-core repulsion = 18178.862945 eV Total energy + Delta-G solvation = -3056.503510 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.25923 -39.65082 -38.28926 -35.79494 -33.91985 -31.91130 -31.33831 -30.86639 -30.08280 -26.88276 -25.29272 -23.55913 -23.20373 -22.73325 -22.21538 -20.56855 -19.20983 -18.39484 -17.69603 -16.82621 -16.71658 -16.59401 -16.15978 -15.42107 -14.95067 -14.87254 -14.74258 -14.50739 -14.31942 -14.08495 -13.99052 -13.66863 -12.96690 -12.93866 -12.86180 -12.77465 -12.46978 -12.40431 -12.21845 -11.96977 -11.83212 -11.78609 -11.68696 -11.17409 -10.83008 -10.55973 -10.39887 -9.91835 -9.63111 -9.14405 -8.07190 -6.21791 0.42435 0.52192 1.38806 1.40690 1.52081 2.36123 2.43168 2.85483 3.13693 3.19239 3.83411 3.93515 4.01802 4.07326 4.19709 4.27560 4.38026 4.48219 4.53106 4.56676 4.60017 4.65437 4.76529 4.78138 4.84371 4.94478 5.08201 5.11887 5.23591 5.25963 5.37637 5.41703 5.46078 5.51782 5.59535 5.63240 5.67516 5.83239 5.92650 6.03691 6.17831 6.20724 6.42006 6.55183 6.92134 7.46580 8.96433 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028767 B = 0.003698 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.110245 B = 7570.682579 C = 8113.578384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.009 3.991 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.533 4.533 8 H 0.052 0.948 9 C 0.045 3.955 10 C -0.101 4.101 11 C -0.093 4.093 12 C 0.098 3.902 13 N -0.678 5.678 14 C 0.213 3.787 15 O -0.358 6.358 16 C 0.108 3.892 17 C -0.178 4.178 18 C -0.087 4.087 19 C -0.164 4.164 20 C -0.085 4.085 21 C -0.214 4.214 22 C -0.127 4.127 23 C -0.097 4.097 24 H 0.258 0.742 25 H -0.012 1.012 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.346 0.654 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.142 0.858 39 H 0.037 0.963 40 H 0.048 0.952 41 H 0.028 0.972 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.682 -18.840 4.684 20.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.189 4.189 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.571 4.571 8 H 0.070 0.930 9 C 0.026 3.974 10 C -0.139 4.139 11 C -0.131 4.131 12 C -0.011 4.011 13 N -0.316 5.316 14 C 0.049 3.951 15 O -0.270 6.270 16 C 0.063 3.937 17 C -0.197 4.197 18 C -0.105 4.105 19 C -0.182 4.182 20 C -0.103 4.103 21 C -0.233 4.233 22 C -0.166 4.166 23 C -0.136 4.136 24 H 0.067 0.933 25 H 0.007 0.993 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.167 0.833 32 H 0.131 0.869 33 H 0.119 0.881 34 H 0.140 0.860 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.165 0.835 38 H 0.160 0.840 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.047 0.953 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.283 -18.956 4.830 20.546 hybrid contribution -0.332 1.990 0.030 2.018 sum -6.615 -16.965 4.860 18.847 Atomic orbital electron populations 1.70045 1.07232 1.26841 1.51742 1.25770 0.95641 1.02448 0.95006 0.85594 0.79207 0.79885 0.77510 1.19001 1.20739 1.20731 1.21689 0.93076 0.92395 1.49950 0.92960 1.18636 0.93100 0.92586 0.93050 1.21491 0.97835 0.94331 1.00275 1.21402 0.98079 0.96979 0.96618 1.21636 0.94197 0.86058 0.99256 1.61322 1.28584 1.31620 1.10080 1.24150 0.79421 1.01156 0.90400 1.86274 1.16162 1.51515 1.73002 1.19316 0.88487 0.91115 0.94744 1.20728 0.90436 1.02785 1.05724 1.21275 0.99166 0.94200 0.95808 1.21430 0.97470 0.98154 1.01139 1.21320 0.92236 0.99289 0.97415 1.21544 1.01674 0.96572 1.03504 1.22118 0.97996 0.96791 0.99675 1.21331 0.98633 0.95724 0.97886 0.93252 0.99342 0.93072 0.93387 0.90313 0.93388 0.90095 0.83323 0.86906 0.88112 0.85968 0.83464 0.83500 0.83469 0.83999 0.94449 0.93285 0.95343 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.59 11.32 21.45 0.24 -54.35 16 2 C 0.01 0.53 5.30 84.65 0.45 0.98 16 3 Si 0.95 44.49 29.54 68.60 2.03 46.51 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 7 C -0.53 -29.98 8.56 25.60 0.22 -29.76 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.04 2.28 2.10 -11.54 -0.02 2.25 16 10 C -0.10 -4.14 5.14 30.59 0.16 -3.98 16 11 C -0.09 -3.11 5.53 30.59 0.17 -2.94 16 12 C 0.10 3.13 2.45 44.91 0.11 3.24 16 13 N -0.68 -17.75 6.30 -608.02 -3.83 -21.58 16 14 C 0.21 4.92 6.27 127.69 0.80 5.72 16 15 O -0.36 -9.93 9.70 -92.40 -0.90 -10.83 16 16 C 0.11 2.76 6.33 22.51 0.14 2.90 16 17 C -0.18 -4.32 9.99 22.37 0.22 -4.10 16 18 C -0.09 -1.66 10.04 22.25 0.22 -1.43 16 19 C -0.16 -2.78 10.04 22.28 0.22 -2.55 16 20 C -0.08 -1.50 10.04 22.25 0.22 -1.28 16 21 C -0.21 -4.54 8.43 22.36 0.19 -4.35 16 22 C -0.13 -5.00 5.17 30.58 0.16 -4.84 16 23 C -0.10 -4.71 4.98 30.58 0.15 -4.56 16 24 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 25 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 26 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 27 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.08 2.51 7.36 -2.39 -0.02 2.49 16 31 H 0.35 9.63 7.46 -89.70 -0.67 8.96 16 32 H 0.11 2.47 7.26 -2.38 -0.02 2.45 16 33 H 0.10 1.86 6.36 -2.38 -0.02 1.85 16 34 H 0.12 2.96 8.06 -2.91 -0.02 2.94 16 35 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 36 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.14 2.70 5.88 -2.91 -0.02 2.68 16 39 H 0.04 1.56 8.13 -2.38 -0.02 1.54 16 40 H 0.05 1.90 7.48 -2.39 -0.02 1.88 16 41 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.05 2.93 6.07 -2.39 -0.01 2.91 16 Total: -1.00 -63.56 331.70 1.29 -62.27 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.33 Total: 22.67 kcal Atomic # 6 Polarization: -48.10 SS G_CDS: 3.42 Total: -44.69 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -3.59 Total: -75.93 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -0.90 Total: -10.83 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -63.56 1.29 -62.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.457 kcal (2) G-P(sol) polarization free energy of solvation -63.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds