Wall clock time and date at job start Mon Mar 30 2020 01:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99913 * 2 1 4 4 H 1.48493 * 109.47416 * 240.00065 * 3 2 1 5 5 H 1.48503 * 109.47039 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47382 * 119.99811 * 3 2 1 7 7 C 1.37881 * 120.00334 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00049 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99981 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47193 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47094 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47514 * 59.99767 * 11 10 9 13 13 N 1.46896 * 109.47141 * 180.02562 * 12 11 10 14 14 C 1.46952 * 110.99993 * 172.79010 * 13 12 11 15 15 C 1.53484 * 109.68872 * 52.95834 * 14 13 12 16 16 C 1.50989 * 107.87339 * 49.29007 * 15 14 13 17 17 O 1.33558 * 128.68701 * 164.05534 * 16 15 14 18 18 C 1.34611 * 109.36790 * 180.10894 * 17 16 15 19 19 C 1.34843 * 108.50197 * 359.94110 * 18 17 16 20 20 C 1.35109 * 122.93876 * 344.05807 * 16 15 14 21 21 C 1.47333 * 110.99707 * 297.23136 * 13 12 11 22 22 C 1.52998 * 109.47131 * 300.00210 * 12 11 10 23 23 C 1.52999 * 109.47426 * 59.99715 * 22 12 11 24 24 H 0.96996 * 120.00529 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46719 * 299.99831 * 9 7 2 26 26 H 1.09003 * 109.47147 * 59.99524 * 10 9 7 27 27 H 1.09004 * 109.46668 * 299.99939 * 10 9 7 28 28 H 1.09005 * 109.46507 * 299.99359 * 11 10 9 29 29 H 1.09002 * 109.47153 * 180.02562 * 11 10 9 30 30 H 1.08995 * 109.47278 * 59.99783 * 12 11 10 31 31 H 1.08999 * 109.43915 * 173.02516 * 14 13 12 32 32 H 1.09004 * 109.43331 * 292.88742 * 14 13 12 33 33 H 1.08998 * 109.78761 * 168.89002 * 15 14 13 34 34 H 1.09003 * 109.77675 * 289.70356 * 15 14 13 35 35 H 1.07994 * 125.74486 * 179.91876 * 18 17 16 36 36 H 1.08006 * 126.68347 * 179.97438 * 19 18 17 37 37 H 1.08999 * 109.70690 * 46.43392 * 21 13 12 38 38 H 1.09002 * 109.70517 * 167.04189 * 21 13 12 39 39 H 1.08998 * 109.47493 * 180.02562 * 22 12 11 40 40 H 1.09005 * 109.47129 * 299.99670 * 22 12 11 41 41 H 1.09002 * 109.47486 * 179.97438 * 23 22 12 42 42 H 1.09005 * 109.47003 * 59.99878 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 -0.0001 12 6 0.6012 -5.0679 -1.2496 13 7 -0.1336 -6.3398 -1.2498 14 6 -1.1151 -6.3808 -2.3427 15 6 -0.4215 -6.0566 -3.6730 16 6 0.8139 -6.9188 -3.7736 17 8 1.5553 -7.1928 -4.8502 18 6 2.5685 -8.0066 -4.4991 19 6 2.4772 -8.2579 -3.1774 20 6 1.3516 -7.5587 -2.7120 21 6 0.7919 -7.4842 -1.3160 22 6 -0.3930 -3.9050 -1.2496 23 6 0.3718 -2.5799 -1.2490 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 0.8903 26 1 2.8722 -3.6042 0.8905 27 1 2.8721 -3.6042 -0.8895 28 1 0.8536 -5.0450 0.8898 29 1 2.1888 -5.8156 0.0003 30 1 1.2281 -5.0098 -2.1393 31 1 -1.5564 -7.3759 -2.3969 32 1 -1.8988 -5.6470 -2.1540 33 1 -1.0934 -6.2766 -4.5026 34 1 -0.1395 -5.0040 -3.6950 35 1 3.3264 -8.3934 -5.1641 36 1 3.1404 -8.8766 -2.5910 37 1 1.6032 -7.3426 -0.6019 38 1 0.2554 -8.4046 -1.0855 39 1 -1.0198 -3.9627 -2.1395 40 1 -1.0200 -3.9630 -0.3598 41 1 -0.3365 -1.7514 -1.2494 42 1 0.9988 -2.5219 -2.1388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173337292.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:58 Heat of formation + Delta-G solvation = 8.356828 kcal Electronic energy + Delta-G solvation = -22256.976728 eV Core-core repulsion = 19202.865339 eV Total energy + Delta-G solvation = -3054.111389 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.75499 -39.30758 -36.29038 -33.17121 -32.69745 -31.22410 -30.13160 -28.72249 -28.51020 -25.10106 -24.02772 -22.86697 -21.54425 -21.32171 -20.48703 -18.93679 -18.20076 -17.18539 -16.41316 -16.19062 -15.52092 -14.87992 -14.67886 -14.35963 -14.02584 -13.36222 -13.14237 -12.99598 -12.81405 -12.74089 -12.58511 -12.29449 -11.98690 -11.68265 -11.42991 -11.19486 -10.91598 -10.68366 -10.63274 -10.50666 -10.32433 -10.10398 -9.73374 -9.57273 -9.30525 -8.81476 -8.59536 -8.25275 -8.23402 -8.13260 -5.92842 -3.98599 1.73754 2.60101 2.94041 3.34635 3.39176 3.42089 4.11017 4.48215 4.65047 4.92641 4.96981 5.03204 5.16235 5.33954 5.36234 5.47069 5.54094 5.63513 5.73426 5.76185 5.83679 5.90364 5.99711 6.08979 6.16722 6.26028 6.37780 6.43449 6.50019 6.54602 6.62180 6.73315 6.83921 7.01945 7.14924 7.17586 7.28043 7.32560 7.43684 7.59391 7.80571 8.09185 8.21376 8.53640 9.05310 9.65591 11.12644 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027087 B = 0.004621 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.465360 B = 6057.374544 C = 6191.184552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.512 4.512 8 H 0.052 0.948 9 C 0.050 3.950 10 C -0.107 4.107 11 C -0.106 4.106 12 C 0.087 3.913 13 N -0.529 5.529 14 C 0.060 3.940 15 C -0.077 4.077 16 C -0.010 4.010 17 O -0.171 6.171 18 C -0.057 4.057 19 C -0.195 4.195 20 C -0.214 4.214 21 C 0.118 3.882 22 C -0.111 4.111 23 C -0.107 4.107 24 H 0.259 0.741 25 H 0.026 0.974 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.200 0.800 36 H 0.147 0.853 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.061 0.939 41 H 0.093 0.907 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.154 -15.947 -6.631 17.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.551 4.551 8 H 0.070 0.930 9 C 0.031 3.969 10 C -0.145 4.145 11 C -0.144 4.144 12 C -0.020 4.020 13 N -0.250 5.250 14 C -0.068 4.068 15 C -0.116 4.116 16 C -0.061 4.061 17 O -0.066 6.066 18 C -0.124 4.124 19 C -0.215 4.215 20 C -0.216 4.216 21 C -0.010 4.010 22 C -0.149 4.149 23 C -0.146 4.146 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.217 0.783 36 H 0.165 0.835 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.111 0.889 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -0.647 -15.732 -6.441 17.011 hybrid contribution 1.275 0.780 -0.851 1.720 sum 0.628 -14.952 -7.292 16.647 Atomic orbital electron populations 1.69858 1.05794 1.26313 1.51020 1.24949 0.94819 0.98871 0.95281 0.86735 0.79668 0.83498 0.78529 1.20432 1.21352 1.20368 1.21216 0.92805 0.90881 1.50168 0.92991 1.18638 0.92589 0.91360 0.94284 1.21611 0.98615 0.94368 0.99916 1.21614 0.97562 0.97919 0.97265 1.21753 0.94827 0.87639 0.97822 1.62462 1.16466 1.02966 1.43113 1.22258 0.95441 1.02641 0.86475 1.21046 0.90904 0.98648 1.00982 1.22326 0.96893 1.02427 0.84492 1.83846 1.33652 1.53164 1.35962 1.24065 0.93522 0.98107 0.96751 1.21425 1.00178 1.04897 0.94968 1.21054 0.98761 1.03316 0.98511 1.20813 0.95377 0.94291 0.90516 1.21782 0.97339 0.95304 1.00492 1.21603 0.99560 0.94745 0.98677 0.93087 0.95581 0.93384 0.93808 0.91824 0.93789 0.94191 0.90752 0.88639 0.89690 0.88702 0.78321 0.83529 0.89176 0.90040 0.93882 0.91981 0.88876 0.95200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.37 11.32 55.43 0.63 -24.74 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.15 8.56 -34.44 -0.29 -14.44 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.05 1.23 2.10 -91.77 -0.19 1.04 16 10 C -0.11 -2.27 5.14 -26.73 -0.14 -2.40 16 11 C -0.11 -1.91 5.09 -26.73 -0.14 -2.04 16 12 C 0.09 1.49 1.24 -67.72 -0.08 1.41 16 13 N -0.53 -7.77 4.82 -227.43 -1.10 -8.87 16 14 C 0.06 0.77 5.29 -3.54 -0.02 0.75 16 15 C -0.08 -1.00 5.59 -27.49 -0.15 -1.16 16 16 C -0.01 -0.15 6.60 -35.28 -0.23 -0.38 16 17 O -0.17 -2.45 10.64 6.81 0.07 -2.38 16 18 C -0.06 -0.67 12.10 29.53 0.36 -0.32 16 19 C -0.19 -2.41 10.90 -39.96 -0.44 -2.85 16 20 C -0.21 -2.99 5.48 -104.96 -0.58 -3.57 16 21 C 0.12 1.58 6.02 -4.79 -0.03 1.56 16 22 C -0.11 -2.10 4.54 -26.73 -0.12 -2.22 16 23 C -0.11 -2.50 4.98 -26.73 -0.13 -2.63 16 24 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.04 0.72 6.21 -51.93 -0.32 0.40 16 30 H 0.04 0.75 5.93 -51.93 -0.31 0.44 16 31 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.10 1.18 6.65 -51.93 -0.35 0.83 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 1.36 6.20 -51.93 -0.32 1.04 16 35 H 0.20 1.52 8.06 -52.49 -0.42 1.09 16 36 H 0.15 1.47 8.06 -52.48 -0.42 1.05 16 37 H 0.09 1.22 5.85 -51.93 -0.30 0.92 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.04 0.73 5.56 -51.93 -0.29 0.44 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 314.43 15.07 4.74 4.74 Total: -1.00 -29.41 314.43 -9.35 -38.76 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.39 Total: 1.76 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: -2.28 Total: -25.65 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: -0.47 Total: -33.61 kcal Atomic # 8 Polarization: -2.45 SS G_CDS: 0.07 Total: -2.38 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.41 -9.35 -38.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337292.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.118 kcal (2) G-P(sol) polarization free energy of solvation -29.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds