Wall clock time and date at job start Mon Mar 30 2020 01:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99913 * 2 1 4 4 H 1.48493 * 109.47416 * 240.00065 * 3 2 1 5 5 H 1.48503 * 109.47039 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47382 * 119.99811 * 3 2 1 7 7 C 1.37881 * 120.00334 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00049 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99981 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47193 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47094 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47514 * 59.99767 * 11 10 9 13 13 N 1.46896 * 109.47141 * 180.02562 * 12 11 10 14 14 C 1.46952 * 110.99993 * 172.79010 * 13 12 11 15 15 C 1.53484 * 109.68872 * 52.95834 * 14 13 12 16 16 C 1.50989 * 107.87339 * 49.29007 * 15 14 13 17 17 O 1.33558 * 128.68701 * 164.05534 * 16 15 14 18 18 C 1.34611 * 109.36790 * 180.10894 * 17 16 15 19 19 C 1.34843 * 108.50197 * 359.94110 * 18 17 16 20 20 C 1.35109 * 122.93876 * 344.05807 * 16 15 14 21 21 C 1.47333 * 110.99707 * 297.23136 * 13 12 11 22 22 C 1.52998 * 109.47131 * 300.00210 * 12 11 10 23 23 C 1.52999 * 109.47426 * 59.99715 * 22 12 11 24 24 H 0.96996 * 120.00529 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46719 * 299.99831 * 9 7 2 26 26 H 1.09003 * 109.47147 * 59.99524 * 10 9 7 27 27 H 1.09004 * 109.46668 * 299.99939 * 10 9 7 28 28 H 1.09005 * 109.46507 * 299.99359 * 11 10 9 29 29 H 1.09002 * 109.47153 * 180.02562 * 11 10 9 30 30 H 1.08995 * 109.47278 * 59.99783 * 12 11 10 31 31 H 1.08999 * 109.43915 * 173.02516 * 14 13 12 32 32 H 1.09004 * 109.43331 * 292.88742 * 14 13 12 33 33 H 1.08998 * 109.78761 * 168.89002 * 15 14 13 34 34 H 1.09003 * 109.77675 * 289.70356 * 15 14 13 35 35 H 1.07994 * 125.74486 * 179.91876 * 18 17 16 36 36 H 1.08006 * 126.68347 * 179.97438 * 19 18 17 37 37 H 1.08999 * 109.70690 * 46.43392 * 21 13 12 38 38 H 1.09002 * 109.70517 * 167.04189 * 21 13 12 39 39 H 1.08998 * 109.47493 * 180.02562 * 22 12 11 40 40 H 1.09005 * 109.47129 * 299.99670 * 22 12 11 41 41 H 1.09002 * 109.47486 * 179.97438 * 23 22 12 42 42 H 1.09005 * 109.47003 * 59.99878 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 -0.0001 12 6 0.6012 -5.0679 -1.2496 13 7 -0.1336 -6.3398 -1.2498 14 6 -1.1151 -6.3808 -2.3427 15 6 -0.4215 -6.0566 -3.6730 16 6 0.8139 -6.9188 -3.7736 17 8 1.5553 -7.1928 -4.8502 18 6 2.5685 -8.0066 -4.4991 19 6 2.4772 -8.2579 -3.1774 20 6 1.3516 -7.5587 -2.7120 21 6 0.7919 -7.4842 -1.3160 22 6 -0.3930 -3.9050 -1.2496 23 6 0.3718 -2.5799 -1.2490 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 0.8903 26 1 2.8722 -3.6042 0.8905 27 1 2.8721 -3.6042 -0.8895 28 1 0.8536 -5.0450 0.8898 29 1 2.1888 -5.8156 0.0003 30 1 1.2281 -5.0098 -2.1393 31 1 -1.5564 -7.3759 -2.3969 32 1 -1.8988 -5.6470 -2.1540 33 1 -1.0934 -6.2766 -4.5026 34 1 -0.1395 -5.0040 -3.6950 35 1 3.3264 -8.3934 -5.1641 36 1 3.1404 -8.8766 -2.5910 37 1 1.6032 -7.3426 -0.6019 38 1 0.2554 -8.4046 -1.0855 39 1 -1.0198 -3.9627 -2.1395 40 1 -1.0200 -3.9630 -0.3598 41 1 -0.3365 -1.7514 -1.2494 42 1 0.9988 -2.5219 -2.1388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173337292.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:57 Heat of formation + Delta-G solvation = -8.351397 kcal Electronic energy + Delta-G solvation = -22257.701251 eV Core-core repulsion = 19202.865339 eV Total energy + Delta-G solvation = -3054.835912 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.73449 -40.60756 -37.86024 -34.70130 -34.05565 -32.56722 -31.63061 -30.25897 -29.73851 -26.81628 -25.27622 -24.18526 -22.99838 -22.41948 -21.92675 -20.58129 -19.42682 -18.44656 -18.09162 -17.36480 -16.80327 -16.46861 -16.01382 -15.79654 -15.09603 -14.80519 -14.59906 -14.54279 -14.25146 -13.98469 -13.72561 -13.39765 -13.30294 -13.26159 -12.93775 -12.83476 -12.64067 -12.42355 -12.17963 -12.00339 -11.82133 -11.74892 -11.58613 -11.19607 -10.71228 -10.54910 -10.41708 -10.33781 -9.33035 -9.20478 -8.05296 -6.19049 0.76806 1.41436 1.42220 1.49907 1.64959 2.02613 2.44563 2.94912 3.20787 3.73321 3.90041 3.96332 3.98696 4.08561 4.13441 4.20480 4.45493 4.49616 4.54160 4.59031 4.71275 4.75949 4.78884 4.84363 4.84911 4.88048 4.90719 4.97714 5.05252 5.16885 5.19881 5.30327 5.35997 5.44150 5.49964 5.62044 5.63554 5.72470 6.06270 6.10041 6.15896 6.20939 6.27100 6.44441 6.92811 7.48393 8.98311 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027087 B = 0.004621 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.465360 B = 6057.374544 C = 6191.184552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 0.949 3.051 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.047 0.953 9 C 0.046 3.954 10 C -0.100 4.100 11 C -0.099 4.099 12 C 0.102 3.898 13 N -0.532 5.532 14 C 0.060 3.940 15 C -0.075 4.075 16 C -0.038 4.038 17 O -0.188 6.188 18 C -0.053 4.053 19 C -0.209 4.209 20 C -0.223 4.223 21 C 0.119 3.881 22 C -0.100 4.100 23 C -0.098 4.098 24 H 0.260 0.740 25 H -0.004 1.004 26 H 0.047 0.953 27 H 0.038 0.962 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.237 0.763 36 H 0.169 0.831 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.406 -17.547 -7.197 18.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.775 3.225 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.576 4.576 8 H 0.065 0.935 9 C 0.028 3.972 10 C -0.138 4.138 11 C -0.136 4.136 12 C -0.006 4.006 13 N -0.253 5.253 14 C -0.068 4.068 15 C -0.113 4.113 16 C -0.089 4.089 17 O -0.085 6.085 18 C -0.120 4.120 19 C -0.229 4.229 20 C -0.226 4.226 21 C -0.009 4.009 22 C -0.138 4.138 23 C -0.137 4.137 24 H 0.069 0.931 25 H 0.014 0.986 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.093 0.907 35 H 0.253 0.747 36 H 0.186 0.814 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -0.087 -17.345 -7.004 18.706 hybrid contribution 1.128 1.243 -0.689 1.814 sum 1.041 -16.102 -7.694 17.876 Atomic orbital electron populations 1.69996 1.06998 1.27031 1.51359 1.25691 0.95667 1.02110 0.94926 0.85758 0.78535 0.79543 0.78691 1.19937 1.20795 1.19754 1.21600 0.92873 0.92567 1.50513 0.93485 1.18612 0.93023 0.92032 0.93526 1.21470 0.97925 0.94807 0.99571 1.21524 0.97842 0.96682 0.97600 1.21407 0.94010 0.88468 0.96672 1.62405 1.16581 1.02000 1.44270 1.22345 0.94824 1.03959 0.85661 1.21009 0.91111 0.97312 1.01867 1.22575 0.97829 1.03554 0.84912 1.83840 1.34417 1.53889 1.36324 1.24886 0.93025 0.96602 0.97451 1.21770 1.00209 1.05345 0.95555 1.21276 0.99332 1.03499 0.98510 1.20885 0.95343 0.94292 0.90332 1.21603 0.97345 0.93799 1.01038 1.21376 0.98722 0.96249 0.97353 0.93085 0.98633 0.93427 0.94364 0.92110 0.91441 0.95532 0.88699 0.88413 0.87748 0.90683 0.74660 0.81378 0.89249 0.88077 0.91857 0.92814 0.92043 0.96308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.35 11.32 21.45 0.24 -53.11 16 2 C 0.01 0.83 5.30 84.66 0.45 1.27 16 3 Si 0.95 44.33 29.54 68.60 2.03 46.36 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.54 -30.41 8.56 25.60 0.22 -30.19 16 8 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 9 C 0.05 2.38 2.10 -11.54 -0.02 2.35 16 10 C -0.10 -4.25 5.14 30.59 0.16 -4.09 16 11 C -0.10 -3.48 5.09 30.59 0.16 -3.32 16 12 C 0.10 3.44 1.24 44.91 0.06 3.50 16 13 N -0.53 -14.63 4.82 -873.45 -4.21 -18.84 16 14 C 0.06 1.41 5.29 86.46 0.46 1.86 16 15 C -0.07 -1.84 5.59 30.10 0.17 -1.67 16 16 C -0.04 -1.05 6.60 25.06 0.17 -0.88 16 17 O -0.19 -5.12 10.64 1.45 0.02 -5.10 16 18 C -0.05 -1.12 12.10 67.04 0.81 -0.30 16 19 C -0.21 -4.64 10.90 22.03 0.24 -4.40 16 20 C -0.22 -5.79 5.48 -20.08 -0.11 -5.90 16 21 C 0.12 2.90 6.02 85.44 0.51 3.42 16 22 C -0.10 -3.80 4.54 30.59 0.14 -3.66 16 23 C -0.10 -4.72 4.98 30.59 0.15 -4.56 16 24 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 25 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 26 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 29 H 0.07 2.07 6.21 -2.39 -0.01 2.06 16 30 H 0.03 0.99 5.93 -2.39 -0.01 0.97 16 31 H 0.09 1.86 8.07 -2.39 -0.02 1.84 16 32 H 0.10 2.23 6.65 -2.39 -0.02 2.22 16 33 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.07 2.13 6.20 -2.39 -0.01 2.12 16 35 H 0.24 2.76 8.06 -2.91 -0.02 2.74 16 36 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 37 H 0.09 2.18 5.85 -2.39 -0.01 2.17 16 38 H 0.10 2.08 8.14 -2.39 -0.02 2.07 16 39 H 0.06 2.13 5.56 -2.39 -0.01 2.11 16 40 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 41 H 0.06 3.33 6.07 -2.39 -0.01 3.32 16 42 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -64.29 314.43 2.63 -61.66 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 1.00 Total: 15.61 kcal Atomic # 6 Polarization: -50.13 SS G_CDS: 3.55 Total: -46.58 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: -3.97 Total: -71.94 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: 0.02 Total: -5.10 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -64.29 2.63 -61.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337292.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.305 kcal (2) G-P(sol) polarization free energy of solvation -64.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds