Wall clock time and date at job start Mon Mar 30 2020 01:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99826 * 2 1 4 4 C 1.38220 * 119.99981 * 180.02562 * 3 2 1 5 5 C 1.38258 * 119.99614 * 359.97438 * 4 3 2 6 6 C 1.38208 * 120.00224 * 359.96141 * 5 4 3 7 7 C 1.50700 * 119.99776 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.46869 * 264.99696 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 C 1.52997 * 109.47555 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47273 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46983 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00145 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00161 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99703 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00027 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47602 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47022 * 120.00397 * 18 16 14 21 21 H 1.48509 * 109.47173 * 239.99962 * 18 16 14 22 22 C 1.38213 * 120.00293 * 180.20443 * 2 1 3 23 23 C 1.50702 * 119.99856 * 0.02562 * 22 2 1 24 24 H 1.08995 * 109.47347 * 90.00272 * 1 2 3 25 25 H 1.09000 * 109.47174 * 210.00345 * 1 2 3 26 26 H 1.08999 * 109.47224 * 330.00047 * 1 2 3 27 27 H 1.07999 * 120.00297 * 359.97438 * 3 2 1 28 28 H 1.07996 * 120.00337 * 179.97438 * 4 3 2 29 29 H 1.08001 * 119.99723 * 179.97438 * 5 4 3 30 30 H 1.09004 * 109.47210 * 144.99989 * 7 6 5 31 31 H 1.08994 * 109.47551 * 24.99641 * 7 6 5 32 32 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 33 33 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 34 34 H 1.09002 * 109.46857 * 59.99862 * 11 10 8 35 35 H 1.08998 * 109.47382 * 300.00439 * 12 11 10 36 36 H 1.09005 * 109.46800 * 60.00640 * 12 11 10 37 37 H 1.08992 * 109.47143 * 300.00104 * 13 12 11 38 38 H 1.08997 * 109.46799 * 60.00311 * 13 12 11 39 39 H 0.97003 * 120.00173 * 179.97438 * 17 16 14 40 40 H 1.08994 * 109.47460 * 270.18789 * 23 22 2 41 41 H 1.09002 * 109.47244 * 30.18750 * 23 22 2 42 42 H 1.08996 * 109.47047 * 150.18220 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5806 -1.1969 0.0008 7 6 4.3342 -2.5020 0.0014 8 6 4.4772 -3.0000 -1.4137 9 8 4.0134 -2.3582 -2.3324 10 7 5.1259 -4.1556 -1.6591 11 6 5.2702 -4.6368 -3.0353 12 6 6.0395 -5.9593 -3.0352 13 6 6.1896 -6.4621 -4.4724 14 6 6.9468 -7.7650 -4.4723 15 1 7.2866 -8.1920 -3.5403 16 6 7.2059 -8.4120 -5.6620 17 7 6.7925 -7.8918 -6.7969 18 14 8.1438 -10.0274 -5.6616 19 1 8.4941 -10.3963 -4.2665 20 1 7.2965 -11.0919 -6.2568 21 1 9.3862 -9.8786 -6.4616 22 6 2.1981 -1.1969 -0.0043 23 6 1.4446 -2.5020 -0.0095 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6583 2.1327 -0.0004 28 1 4.1204 2.1326 -0.0010 29 1 5.3517 0.0000 -0.0014 30 1 3.7872 -3.2371 0.5917 31 1 5.3227 -2.3506 0.4349 32 1 5.4971 -4.6689 -0.9245 33 1 4.2833 -4.7909 -3.4716 34 1 5.8159 -3.8986 -3.6229 35 1 7.0264 -5.8056 -2.5987 36 1 5.4932 -6.6973 -2.4478 37 1 5.2026 -6.6159 -4.9085 38 1 6.7356 -5.7242 -5.0603 39 1 6.9751 -8.3468 -7.6340 40 1 1.2596 -2.8189 1.0168 41 1 0.4939 -2.3706 -0.5261 42 1 2.0353 -3.2605 -0.5231 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183259729.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:34 Heat of formation + Delta-G solvation = -46.711245 kcal Electronic energy + Delta-G solvation = -20223.988456 eV Core-core repulsion = 17167.489136 eV Total energy + Delta-G solvation = -3056.499320 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.28455 -38.91529 -35.42075 -33.66844 -33.41625 -33.27688 -31.25422 -29.09954 -27.42257 -26.49806 -26.09442 -23.15151 -21.27345 -20.93225 -20.67683 -19.68218 -16.86724 -16.49243 -16.31410 -16.20128 -15.42752 -15.14797 -14.58069 -14.40969 -14.30366 -13.97390 -13.41223 -13.06680 -13.04039 -12.89190 -12.72674 -12.45872 -12.29962 -11.89000 -11.85064 -11.80336 -11.57359 -11.03517 -10.95426 -10.92319 -10.74100 -10.57673 -9.88042 -9.87689 -9.39652 -9.11873 -8.75932 -8.65797 -8.58811 -8.38512 -6.02827 -4.05965 1.25818 1.31134 2.81050 3.29137 3.34833 3.37053 3.40543 3.76702 4.43498 4.49822 4.63547 4.79369 4.88085 5.01763 5.10326 5.14555 5.17474 5.33021 5.33756 5.41343 5.50181 5.54090 5.58432 5.67332 5.73369 5.75254 5.77921 6.04193 6.12501 6.16171 6.40871 6.44201 6.49871 6.57832 6.59599 6.83550 6.95085 7.00045 7.62888 7.73133 7.75236 7.96071 8.36511 8.43704 9.01036 9.58346 11.08531 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040621 B = 0.002616 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.135999 B =10699.442377 C =10845.966006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.120 4.120 4 C -0.123 4.123 5 C -0.110 4.110 6 C -0.060 4.060 7 C -0.106 4.106 8 C 0.508 3.492 9 O -0.534 6.534 10 N -0.729 5.729 11 C 0.117 3.883 12 C -0.120 4.120 13 C 0.023 3.977 14 C -0.522 4.522 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.068 4.068 23 C -0.119 4.119 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.398 0.602 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.316 15.302 18.264 25.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.089 4.089 3 C -0.138 4.138 4 C -0.141 4.141 5 C -0.128 4.128 6 C -0.060 4.060 7 C -0.146 4.146 8 C 0.293 3.707 9 O -0.410 6.410 10 N -0.380 5.380 11 C -0.006 4.006 12 C -0.158 4.158 13 C -0.014 4.014 14 C -0.560 4.560 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.068 4.068 23 C -0.175 4.175 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.231 0.769 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.658 15.724 17.384 25.352 hybrid contribution 0.855 -1.119 0.125 1.414 sum -8.803 14.605 17.509 24.441 Atomic orbital electron populations 1.20806 0.91394 1.02542 1.02365 1.19706 0.95872 0.92595 1.00725 1.20962 0.94273 0.97246 1.01307 1.21024 0.94281 0.97767 1.00993 1.20947 0.99616 0.91968 1.00232 1.19124 0.92871 0.93681 1.00345 1.20721 1.02191 0.96130 0.95519 1.20455 0.78376 0.81046 0.90833 1.90731 1.47747 1.56332 1.46183 1.46233 1.57509 1.23710 1.10541 1.21628 1.00950 0.96952 0.81065 1.21882 0.98338 0.93301 1.02303 1.19034 0.97404 0.95964 0.89046 1.21241 1.35630 1.06374 0.92753 0.92594 1.25039 0.95977 0.97840 0.95669 1.69978 1.46445 1.39197 0.97661 0.86525 0.79668 0.83679 0.78047 1.19759 1.20993 1.20989 1.19530 0.92897 0.94935 0.99441 1.20857 1.00333 0.94464 1.01850 0.91172 0.91385 0.91756 0.86350 0.86220 0.86274 0.88024 0.88144 0.76860 0.91874 0.91870 0.92744 0.92745 0.96294 0.96291 0.92970 0.91214 0.91204 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.19 36.00 0.33 -0.61 16 2 C -0.09 -0.98 5.88 -104.63 -0.62 -1.59 16 3 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 4 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 5 C -0.11 -1.26 9.68 -39.59 -0.38 -1.64 16 6 C -0.06 -0.72 4.37 -104.63 -0.46 -1.18 16 7 C -0.11 -1.11 5.15 -29.03 -0.15 -1.26 16 8 C 0.51 7.39 7.02 -10.98 -0.08 7.32 16 9 O -0.53 -10.17 16.03 5.55 0.09 -10.08 16 10 N -0.73 -10.21 5.56 -60.29 -0.33 -10.54 16 11 C 0.12 2.06 5.67 -4.04 -0.02 2.04 16 12 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.89 13.29 55.43 0.74 -26.16 16 18 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C -0.07 -0.80 5.88 -104.62 -0.62 -1.42 16 23 C -0.12 -1.20 8.39 36.01 0.30 -0.90 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.50 6.72 -51.93 -0.35 0.15 16 26 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 27 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 28 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 29 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 30 H 0.10 0.84 7.01 -51.93 -0.36 0.48 16 31 H 0.10 0.82 8.05 -51.93 -0.42 0.40 16 32 H 0.40 4.34 8.47 -40.82 -0.35 3.99 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.67 6.72 -51.93 -0.35 0.32 16 42 H 0.07 0.76 6.15 -51.93 -0.32 0.44 16 LS Contribution 348.10 15.07 5.25 5.25 Total: -1.00 -33.59 348.10 -9.20 -42.79 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.76 Total: 0.28 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -3.16 Total: -17.98 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.40 Total: -36.70 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.59 -9.20 -42.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183259729.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.918 kcal (2) G-P(sol) polarization free energy of solvation -33.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds