Wall clock time and date at job start Mon Mar 30 2020 01:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99826 * 2 1 4 4 C 1.38220 * 119.99981 * 180.02562 * 3 2 1 5 5 C 1.38258 * 119.99614 * 359.97438 * 4 3 2 6 6 C 1.38208 * 120.00224 * 359.96141 * 5 4 3 7 7 C 1.50700 * 119.99776 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.46869 * 264.99696 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 C 1.52997 * 109.47555 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47273 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46983 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00145 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00161 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99703 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00027 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47602 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47022 * 120.00397 * 18 16 14 21 21 H 1.48509 * 109.47173 * 239.99962 * 18 16 14 22 22 C 1.38213 * 120.00293 * 180.20443 * 2 1 3 23 23 C 1.50702 * 119.99856 * 0.02562 * 22 2 1 24 24 H 1.08995 * 109.47347 * 90.00272 * 1 2 3 25 25 H 1.09000 * 109.47174 * 210.00345 * 1 2 3 26 26 H 1.08999 * 109.47224 * 330.00047 * 1 2 3 27 27 H 1.07999 * 120.00297 * 359.97438 * 3 2 1 28 28 H 1.07996 * 120.00337 * 179.97438 * 4 3 2 29 29 H 1.08001 * 119.99723 * 179.97438 * 5 4 3 30 30 H 1.09004 * 109.47210 * 144.99989 * 7 6 5 31 31 H 1.08994 * 109.47551 * 24.99641 * 7 6 5 32 32 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 33 33 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 34 34 H 1.09002 * 109.46857 * 59.99862 * 11 10 8 35 35 H 1.08998 * 109.47382 * 300.00439 * 12 11 10 36 36 H 1.09005 * 109.46800 * 60.00640 * 12 11 10 37 37 H 1.08992 * 109.47143 * 300.00104 * 13 12 11 38 38 H 1.08997 * 109.46799 * 60.00311 * 13 12 11 39 39 H 0.97003 * 120.00173 * 179.97438 * 17 16 14 40 40 H 1.08994 * 109.47460 * 270.18789 * 23 22 2 41 41 H 1.09002 * 109.47244 * 30.18750 * 23 22 2 42 42 H 1.08996 * 109.47047 * 150.18220 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5806 -1.1969 0.0008 7 6 4.3342 -2.5020 0.0014 8 6 4.4772 -3.0000 -1.4137 9 8 4.0134 -2.3582 -2.3324 10 7 5.1259 -4.1556 -1.6591 11 6 5.2702 -4.6368 -3.0353 12 6 6.0395 -5.9593 -3.0352 13 6 6.1896 -6.4621 -4.4724 14 6 6.9468 -7.7650 -4.4723 15 1 7.2866 -8.1920 -3.5403 16 6 7.2059 -8.4120 -5.6620 17 7 6.7925 -7.8918 -6.7969 18 14 8.1438 -10.0274 -5.6616 19 1 8.4941 -10.3963 -4.2665 20 1 7.2965 -11.0919 -6.2568 21 1 9.3862 -9.8786 -6.4616 22 6 2.1981 -1.1969 -0.0043 23 6 1.4446 -2.5020 -0.0095 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6583 2.1327 -0.0004 28 1 4.1204 2.1326 -0.0010 29 1 5.3517 0.0000 -0.0014 30 1 3.7872 -3.2371 0.5917 31 1 5.3227 -2.3506 0.4349 32 1 5.4971 -4.6689 -0.9245 33 1 4.2833 -4.7909 -3.4716 34 1 5.8159 -3.8986 -3.6229 35 1 7.0264 -5.8056 -2.5987 36 1 5.4932 -6.6973 -2.4478 37 1 5.2026 -6.6159 -4.9085 38 1 6.7356 -5.7242 -5.0603 39 1 6.9751 -8.3468 -7.6340 40 1 1.2596 -2.8189 1.0168 41 1 0.4939 -2.3706 -0.5261 42 1 2.0353 -3.2605 -0.5231 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183259729.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:34 Heat of formation + Delta-G solvation = -66.688594 kcal Electronic energy + Delta-G solvation = -20224.854739 eV Core-core repulsion = 17167.489136 eV Total energy + Delta-G solvation = -3057.365603 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.24737 -39.95843 -36.96349 -35.17844 -34.50169 -34.18942 -33.00584 -30.08326 -28.64069 -27.62241 -27.08075 -24.92213 -22.31187 -22.29640 -21.70766 -20.86331 -18.56748 -17.94491 -17.26217 -17.12882 -16.68466 -16.45870 -16.38574 -15.37057 -15.33785 -15.16149 -14.59664 -14.22144 -13.88608 -13.81320 -13.70333 -13.68163 -13.58834 -13.41244 -13.14195 -12.77572 -12.60012 -12.55432 -12.49909 -12.34722 -11.81067 -11.70064 -11.67989 -11.59026 -11.23101 -10.86924 -10.57068 -10.07646 -9.48934 -9.38013 -8.20334 -6.31976 0.43498 0.50784 1.41582 1.41659 1.55039 1.67066 2.24814 2.42497 2.88954 3.13558 3.67112 3.89096 4.00582 4.08005 4.13952 4.20507 4.22830 4.34689 4.39551 4.49384 4.54784 4.60986 4.75756 4.80955 4.82608 4.84243 4.93682 4.96611 4.99704 5.03591 5.16547 5.30175 5.38239 5.45406 5.53218 5.61602 5.65406 5.69777 5.77479 5.83523 6.18181 6.21396 6.62428 6.86109 7.31106 7.37924 8.92121 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040621 B = 0.002616 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.135999 B =10699.442377 C =10845.966006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.104 4.104 3 C -0.129 4.129 4 C -0.133 4.133 5 C -0.127 4.127 6 C -0.081 4.081 7 C -0.095 4.095 8 C 0.508 3.492 9 O -0.583 6.583 10 N -0.716 5.716 11 C 0.130 3.870 12 C -0.101 4.101 13 C 0.023 3.977 14 C -0.539 4.539 15 H 0.068 0.932 16 C -0.005 4.005 17 N -0.936 5.936 18 Si 0.968 3.032 19 H -0.257 1.257 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.089 4.089 23 C -0.116 4.116 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.417 0.583 33 H 0.046 0.954 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.069 0.931 37 H -0.009 1.009 38 H -0.010 1.010 39 H 0.263 0.737 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.971 14.830 20.651 26.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.104 4.104 3 C -0.147 4.147 4 C -0.151 4.151 5 C -0.145 4.145 6 C -0.082 4.082 7 C -0.134 4.134 8 C 0.296 3.704 9 O -0.463 6.463 10 N -0.369 5.369 11 C 0.006 3.994 12 C -0.138 4.138 13 C -0.015 4.015 14 C -0.577 4.577 15 H 0.086 0.914 16 C -0.202 4.202 17 N -0.577 5.577 18 Si 0.793 3.207 19 H -0.181 1.181 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.089 4.089 23 C -0.172 4.172 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.156 0.844 28 H 0.157 0.843 29 H 0.148 0.852 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.254 0.746 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.009 0.991 38 H 0.009 0.991 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.089 0.911 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.302 15.240 19.826 26.680 hybrid contribution 0.711 -0.896 -0.636 1.308 sum -8.591 14.344 19.190 25.452 Atomic orbital electron populations 1.20839 0.89785 1.03790 1.02522 1.20092 0.97314 0.92622 1.00403 1.21305 0.94544 0.98075 1.00780 1.21353 0.94720 0.98446 1.00565 1.21235 1.00421 0.92322 1.00515 1.19390 0.93325 0.94437 1.01008 1.20738 1.04069 0.96021 0.92576 1.21194 0.76886 0.80201 0.92144 1.90713 1.49734 1.57719 1.48151 1.45998 1.57486 1.23958 1.09437 1.21182 0.99397 0.95730 0.83065 1.21588 0.99652 0.94181 0.98425 1.18953 0.95134 0.95041 0.92388 1.21714 1.35551 1.07151 0.93304 0.91429 1.26049 0.97009 1.01933 0.95259 1.70124 1.47954 1.41138 0.98468 0.85349 0.77996 0.78611 0.78779 1.18084 1.20585 1.20602 1.19859 0.93313 0.95896 0.99793 1.20861 0.99897 0.93450 1.03033 0.91441 0.90546 0.90173 0.84351 0.84318 0.85206 0.85478 0.85308 0.74605 0.93591 0.93675 0.91279 0.91224 0.99094 0.99141 0.92817 0.89015 0.91073 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 9.19 71.24 0.65 -1.06 16 2 C -0.10 -2.19 5.88 -19.87 -0.12 -2.30 16 3 C -0.13 -2.55 9.70 22.27 0.22 -2.33 16 4 C -0.13 -2.68 10.05 22.27 0.22 -2.46 16 5 C -0.13 -2.79 9.68 22.27 0.22 -2.58 16 6 C -0.08 -1.87 4.37 -19.87 -0.09 -1.95 16 7 C -0.09 -1.79 5.15 29.10 0.15 -1.64 16 8 C 0.51 14.35 7.02 87.66 0.62 14.97 16 9 O -0.58 -22.57 16.03 -3.04 -0.05 -22.62 16 10 N -0.72 -19.11 5.56 -463.06 -2.57 -21.68 16 11 C 0.13 4.64 5.67 86.38 0.49 5.13 16 12 C -0.10 -3.85 5.27 30.59 0.16 -3.69 16 13 C 0.02 1.18 4.97 29.85 0.15 1.33 16 14 C -0.54 -30.09 9.11 25.60 0.23 -29.86 16 15 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 16 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 17 N -0.94 -57.52 13.29 21.45 0.28 -57.23 16 18 Si 0.97 43.78 29.54 68.60 2.03 45.80 16 19 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 C -0.09 -2.02 5.88 -19.87 -0.12 -2.14 16 23 C -0.12 -2.23 8.39 71.24 0.60 -1.63 16 24 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.08 1.01 6.72 -2.39 -0.02 0.99 16 26 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 27 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 28 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 29 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 30 H 0.13 1.75 7.01 -2.38 -0.02 1.73 16 31 H 0.13 1.70 8.05 -2.39 -0.02 1.68 16 32 H 0.42 7.96 8.47 -92.71 -0.79 7.18 16 33 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 37 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 39 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 40 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.07 1.31 6.72 -2.39 -0.02 1.29 16 42 H 0.05 1.15 6.15 -2.39 -0.01 1.14 16 Total: -1.00 -74.27 348.10 3.75 -70.52 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.21 Total: 15.26 kcal Atomic # 6 Polarization: -33.89 SS G_CDS: 3.85 Total: -30.04 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -2.29 Total: -78.92 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.05 Total: -22.62 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -74.27 3.75 -70.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183259729.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.829 kcal (2) G-P(sol) polarization free energy of solvation -74.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds