Wall clock time and date at job start Mon Mar 30 2020 01:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00305 * 2 1 4 4 H 1.48496 * 109.47160 * 239.99736 * 3 2 1 5 5 H 1.48499 * 109.47141 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46931 * 119.99464 * 3 2 1 7 7 C 1.37876 * 119.99469 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99991 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00263 * 359.97438 * 7 2 1 10 10 N 1.46908 * 109.46954 * 174.03130 * 9 7 2 11 11 C 1.46902 * 110.99428 * 178.67831 * 10 9 7 12 12 C 1.50706 * 109.46542 * 196.63944 * 11 10 9 13 13 C 1.38281 * 119.97273 * 263.77356 * 12 11 10 14 14 C 1.38248 * 120.11393 * 180.27807 * 13 12 11 15 15 C 1.38172 * 120.05011 * 0.02562 * 14 13 12 16 16 C 1.38704 * 119.94533 * 0.02562 * 15 14 13 17 17 O 1.35905 * 120.05401 * 179.97438 * 16 15 14 18 18 C 1.38121 * 119.96871 * 84.05524 * 12 11 10 19 19 C 1.46899 * 111.00076 * 302.62773 * 10 9 7 20 20 C 1.54264 * 110.02955 * 93.96491 * 19 10 9 21 21 C 1.54960 * 104.16215 * 217.13645 * 20 19 10 22 22 C 1.54887 * 102.77736 * 37.88979 * 21 20 19 23 23 C 1.53877 * 110.03245 * 336.75029 * 19 10 9 24 24 H 0.97007 * 120.00120 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46699 * 54.03568 * 9 7 2 26 26 H 1.08998 * 109.47477 * 294.03545 * 9 7 2 27 27 H 1.08997 * 109.47207 * 76.64678 * 11 10 9 28 28 H 1.08992 * 109.47373 * 316.63497 * 11 10 9 29 29 H 1.07999 * 119.94961 * 0.26445 * 13 12 11 30 30 H 1.07993 * 119.97657 * 179.97438 * 14 13 12 31 31 H 1.07999 * 120.02367 * 179.97438 * 15 14 13 32 32 H 0.96705 * 113.99954 * 270.01923 * 17 16 15 33 33 H 1.08000 * 120.03295 * 359.69230 * 18 12 11 34 34 H 1.08995 * 110.01922 * 215.35792 * 19 10 9 35 35 H 1.08996 * 110.48799 * 335.78476 * 20 19 10 36 36 H 1.09007 * 110.48856 * 98.42708 * 20 19 10 37 37 H 1.09004 * 110.72352 * 279.57445 * 21 20 19 38 38 H 1.09006 * 110.92691 * 156.30060 * 21 20 19 39 39 H 1.09009 * 110.48502 * 203.41015 * 22 21 20 40 40 H 1.08992 * 110.60224 * 80.81937 * 22 21 20 41 41 H 1.09000 * 110.03261 * 238.56142 * 23 19 10 42 42 H 1.08989 * 110.03226 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0017 10 7 2.1989 -3.6121 -0.1419 11 6 1.5014 -4.9047 -0.1134 12 6 2.4960 -6.0064 0.1478 13 6 3.0309 -6.7193 -0.9095 14 6 3.9391 -7.7343 -0.6728 15 6 4.3142 -8.0393 0.6216 16 6 3.7783 -7.3264 1.6839 17 8 4.1452 -7.6249 2.9580 18 6 2.8680 -6.3071 1.4436 19 6 2.9951 -3.4706 -1.3683 20 6 4.3240 -2.7523 -1.0555 21 6 4.5713 -1.8558 -2.2950 22 6 3.1463 -1.3657 -2.6531 23 6 2.2465 -2.5896 -2.3840 24 1 -0.4851 0.8401 -0.0004 25 1 0.5462 -2.5125 -0.8298 26 1 0.7070 -2.6039 0.9405 27 1 1.0137 -5.0756 -1.0731 28 1 0.7525 -4.8961 0.6784 29 1 2.7385 -6.4829 -1.9219 30 1 4.3552 -8.2899 -1.5001 31 1 5.0234 -8.8326 0.8060 32 1 3.5882 -8.2922 3.3817 33 1 2.4503 -5.7498 2.2690 34 1 3.1934 -4.4516 -1.7998 35 1 4.2260 -2.1426 -0.1574 36 1 5.1309 -3.4761 -0.9402 37 1 4.9968 -2.4372 -3.1130 38 1 5.2175 -1.0145 -2.0443 39 1 3.0945 -1.0778 -3.7032 40 1 2.8560 -0.5312 -2.0150 41 1 2.0825 -3.1429 -3.3086 42 1 1.2924 -2.2676 -1.9671 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203859980.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:59 Heat of formation + Delta-G solvation = 0.369956 kcal Electronic energy + Delta-G solvation = -22076.499883 eV Core-core repulsion = 19022.042157 eV Total energy + Delta-G solvation = -3054.457726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.74393 -38.58786 -36.66171 -34.28074 -32.70994 -31.03951 -29.65271 -27.99313 -27.12994 -26.87996 -24.10055 -22.41606 -22.01127 -21.02325 -19.82708 -18.21902 -17.77586 -16.58070 -16.19413 -15.65814 -15.24862 -15.05212 -14.89221 -14.32904 -13.75584 -13.67370 -13.25392 -13.00091 -12.49081 -12.38851 -12.02784 -11.88069 -11.47848 -11.41831 -11.07712 -10.89478 -10.81748 -10.61882 -10.38355 -10.31884 -10.20572 -10.09343 -9.89283 -9.49746 -9.14494 -8.78899 -8.62982 -8.42775 -8.36401 -7.13560 -6.02145 -3.98297 1.40353 1.52484 3.31919 3.37259 3.40028 3.78387 4.28208 4.43317 4.96579 5.02051 5.12491 5.29461 5.33239 5.49275 5.52984 5.55471 5.67813 5.79856 5.84592 6.02329 6.14162 6.14832 6.22748 6.35770 6.41547 6.48581 6.52807 6.57103 6.63121 6.71642 6.78540 6.84008 6.90126 6.98203 7.02486 7.06951 7.39265 7.44611 7.64026 7.73383 7.94665 8.10570 8.22687 8.57434 9.07842 9.61676 11.09149 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022688 B = 0.005331 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.845564 B = 5250.563415 C = 5663.318750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.057 3.943 3 Si 0.883 3.117 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.501 4.501 8 H 0.079 0.921 9 C 0.186 3.814 10 N -0.526 5.526 11 C 0.086 3.914 12 C -0.041 4.041 13 C -0.125 4.125 14 C -0.108 4.108 15 C -0.156 4.156 16 C 0.098 3.902 17 O -0.500 6.500 18 C -0.121 4.121 19 C 0.097 3.903 20 C -0.110 4.110 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.157 4.157 24 H 0.260 0.740 25 H 0.009 0.991 26 H 0.025 0.975 27 H 0.035 0.965 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.385 0.615 33 H 0.129 0.871 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.042 0.958 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.036 0.964 40 H 0.093 0.907 41 H 0.029 0.971 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.155 -13.513 -1.687 14.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.144 4.144 3 Si 0.711 3.289 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.539 4.539 8 H 0.097 0.903 9 C 0.062 3.938 10 N -0.250 5.250 11 C -0.042 4.042 12 C -0.042 4.042 13 C -0.143 4.143 14 C -0.126 4.126 15 C -0.175 4.175 16 C 0.054 3.946 17 O -0.310 6.310 18 C -0.140 4.140 19 C -0.012 4.012 20 C -0.148 4.148 21 C -0.161 4.161 22 C -0.153 4.153 23 C -0.194 4.194 24 H 0.070 0.930 25 H 0.026 0.974 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.095 0.905 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.240 0.760 33 H 0.147 0.853 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.111 0.889 41 H 0.048 0.952 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.738 -12.945 -1.378 14.227 hybrid contribution -0.416 0.564 -0.626 0.940 sum 5.322 -12.381 -2.005 13.625 Atomic orbital electron populations 1.69935 1.05935 1.26681 1.51401 1.24909 0.94703 0.98846 0.95939 0.86814 0.79719 0.83546 0.78840 1.19892 1.21499 1.20211 1.21436 0.94326 0.89418 1.48766 0.90289 1.19957 0.90503 0.87554 0.95819 1.62423 1.26122 1.00716 1.35754 1.21067 0.93568 0.89323 1.00272 1.19883 0.96822 0.95179 0.92328 1.21111 0.98052 0.96351 0.98810 1.20920 0.97760 0.97790 0.96107 1.21288 1.02189 1.01263 0.92744 1.18477 0.96150 0.96100 0.83888 1.84848 1.57856 1.63205 1.25092 1.21309 0.97451 0.97629 0.97604 1.22066 0.93747 0.96469 0.88910 1.22583 0.95260 0.97811 0.99098 1.22447 0.97543 0.98554 0.97569 1.22415 0.93831 0.99918 0.99149 1.22916 1.03323 0.96328 0.96869 0.93006 0.97391 0.95721 0.94695 0.90501 0.86230 0.86114 0.86098 0.76013 0.85285 0.92901 0.88895 0.93960 0.93357 0.92835 0.94531 0.88866 0.95223 0.87182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.48 13.29 55.43 0.74 -24.75 16 2 C 0.06 1.52 5.14 -17.82 -0.09 1.43 16 3 Si 0.88 20.93 28.51 -169.99 -4.85 16.08 16 4 H -0.27 -6.30 7.09 56.52 0.40 -5.90 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.50 -12.88 5.23 -34.44 -0.18 -13.06 16 8 H 0.08 2.02 3.91 -52.48 -0.21 1.81 16 9 C 0.19 4.51 4.18 -4.97 -0.02 4.49 16 10 N -0.53 -10.82 4.39 -228.17 -1.00 -11.82 16 11 C 0.09 1.50 5.03 -4.97 -0.03 1.47 16 12 C -0.04 -0.65 5.05 -104.65 -0.53 -1.17 16 13 C -0.12 -1.73 8.43 -39.56 -0.33 -2.07 16 14 C -0.11 -1.33 10.04 -39.60 -0.40 -1.72 16 15 C -0.16 -1.96 9.99 -39.43 -0.39 -2.36 16 16 C 0.10 1.36 6.70 -39.22 -0.26 1.09 16 17 O -0.50 -6.22 13.50 -19.44 -0.26 -6.48 16 18 C -0.12 -1.85 9.66 -39.43 -0.38 -2.23 16 19 C 0.10 1.87 2.72 -66.59 -0.18 1.69 16 20 C -0.11 -2.12 5.88 -25.04 -0.15 -2.26 16 21 C -0.12 -2.22 6.90 -24.70 -0.17 -2.39 16 22 C -0.12 -2.32 6.17 -25.07 -0.15 -2.47 16 23 C -0.16 -3.16 5.63 -25.61 -0.14 -3.31 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.01 0.22 5.83 -51.93 -0.30 -0.08 16 26 H 0.02 0.65 8.05 -51.93 -0.42 0.23 16 27 H 0.03 0.59 7.94 -51.93 -0.41 0.18 16 28 H 0.08 1.33 7.90 -51.93 -0.41 0.92 16 29 H 0.12 1.55 7.49 -52.49 -0.39 1.16 16 30 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 31 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.38 2.74 9.06 45.56 0.41 3.15 16 33 H 0.13 2.00 8.06 -52.49 -0.42 1.57 16 34 H 0.05 0.95 5.54 -51.93 -0.29 0.66 16 35 H 0.09 2.02 5.40 -51.93 -0.28 1.74 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.04 0.67 8.14 -51.92 -0.42 0.24 16 40 H 0.09 2.13 4.68 -51.93 -0.24 1.89 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.11 2.58 3.98 -51.94 -0.21 2.37 16 LS Contribution 320.73 15.07 4.83 4.83 Total: -1.00 -28.81 320.73 -9.22 -38.03 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.27 Total: 6.97 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -3.41 Total: -22.87 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: -0.26 Total: -36.57 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.26 Total: -6.48 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.85 Total: 16.08 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.81 -9.22 -38.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203859980.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.401 kcal (2) G-P(sol) polarization free energy of solvation -28.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds