Wall clock time and date at job start Mon Mar 30 2020 01:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00305 * 2 1 4 4 H 1.48496 * 109.47160 * 239.99736 * 3 2 1 5 5 H 1.48499 * 109.47141 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46931 * 119.99464 * 3 2 1 7 7 C 1.37876 * 119.99469 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99991 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00263 * 359.97438 * 7 2 1 10 10 N 1.46908 * 109.46954 * 174.03130 * 9 7 2 11 11 C 1.46902 * 110.99428 * 178.67831 * 10 9 7 12 12 C 1.50706 * 109.46542 * 196.63944 * 11 10 9 13 13 C 1.38281 * 119.97273 * 263.77356 * 12 11 10 14 14 C 1.38248 * 120.11393 * 180.27807 * 13 12 11 15 15 C 1.38172 * 120.05011 * 0.02562 * 14 13 12 16 16 C 1.38704 * 119.94533 * 0.02562 * 15 14 13 17 17 O 1.35905 * 120.05401 * 179.97438 * 16 15 14 18 18 C 1.38121 * 119.96871 * 84.05524 * 12 11 10 19 19 C 1.46899 * 111.00076 * 302.62773 * 10 9 7 20 20 C 1.54264 * 110.02955 * 93.96491 * 19 10 9 21 21 C 1.54960 * 104.16215 * 217.13645 * 20 19 10 22 22 C 1.54887 * 102.77736 * 37.88979 * 21 20 19 23 23 C 1.53877 * 110.03245 * 336.75029 * 19 10 9 24 24 H 0.97007 * 120.00120 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46699 * 54.03568 * 9 7 2 26 26 H 1.08998 * 109.47477 * 294.03545 * 9 7 2 27 27 H 1.08997 * 109.47207 * 76.64678 * 11 10 9 28 28 H 1.08992 * 109.47373 * 316.63497 * 11 10 9 29 29 H 1.07999 * 119.94961 * 0.26445 * 13 12 11 30 30 H 1.07993 * 119.97657 * 179.97438 * 14 13 12 31 31 H 1.07999 * 120.02367 * 179.97438 * 15 14 13 32 32 H 0.96705 * 113.99954 * 270.01923 * 17 16 15 33 33 H 1.08000 * 120.03295 * 359.69230 * 18 12 11 34 34 H 1.08995 * 110.01922 * 215.35792 * 19 10 9 35 35 H 1.08996 * 110.48799 * 335.78476 * 20 19 10 36 36 H 1.09007 * 110.48856 * 98.42708 * 20 19 10 37 37 H 1.09004 * 110.72352 * 279.57445 * 21 20 19 38 38 H 1.09006 * 110.92691 * 156.30060 * 21 20 19 39 39 H 1.09009 * 110.48502 * 203.41015 * 22 21 20 40 40 H 1.08992 * 110.60224 * 80.81937 * 22 21 20 41 41 H 1.09000 * 110.03261 * 238.56142 * 23 19 10 42 42 H 1.08989 * 110.03226 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0017 10 7 2.1989 -3.6121 -0.1419 11 6 1.5014 -4.9047 -0.1134 12 6 2.4960 -6.0064 0.1478 13 6 3.0309 -6.7193 -0.9095 14 6 3.9391 -7.7343 -0.6728 15 6 4.3142 -8.0393 0.6216 16 6 3.7783 -7.3264 1.6839 17 8 4.1452 -7.6249 2.9580 18 6 2.8680 -6.3071 1.4436 19 6 2.9951 -3.4706 -1.3683 20 6 4.3240 -2.7523 -1.0555 21 6 4.5713 -1.8558 -2.2950 22 6 3.1463 -1.3657 -2.6531 23 6 2.2465 -2.5896 -2.3840 24 1 -0.4851 0.8401 -0.0004 25 1 0.5462 -2.5125 -0.8298 26 1 0.7070 -2.6039 0.9405 27 1 1.0137 -5.0756 -1.0731 28 1 0.7525 -4.8961 0.6784 29 1 2.7385 -6.4829 -1.9219 30 1 4.3552 -8.2899 -1.5001 31 1 5.0234 -8.8326 0.8060 32 1 3.5882 -8.2922 3.3817 33 1 2.4503 -5.7498 2.2690 34 1 3.1934 -4.4516 -1.7998 35 1 4.2260 -2.1426 -0.1574 36 1 5.1309 -3.4761 -0.9402 37 1 4.9968 -2.4372 -3.1130 38 1 5.2175 -1.0145 -2.0443 39 1 3.0945 -1.0778 -3.7032 40 1 2.8560 -0.5312 -2.0150 41 1 2.0825 -3.1429 -3.3086 42 1 1.2924 -2.2676 -1.9671 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203859980.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:58 Heat of formation + Delta-G solvation = -17.898473 kcal Electronic energy + Delta-G solvation = -22077.292062 eV Core-core repulsion = 19022.042157 eV Total energy + Delta-G solvation = -3055.249905 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.94942 -40.01884 -37.72339 -35.77388 -34.65649 -32.34379 -30.75463 -29.62238 -28.89805 -28.31366 -25.70875 -23.79850 -23.44710 -22.21063 -21.35546 -19.76640 -18.92384 -18.42758 -17.22470 -17.07130 -16.91568 -16.45751 -16.14923 -16.01158 -15.26456 -14.87554 -14.60909 -14.54009 -14.01858 -13.86176 -13.52033 -13.18454 -12.93843 -12.78616 -12.71963 -12.57970 -12.34057 -12.32306 -12.05479 -11.69617 -11.66411 -11.53331 -11.46495 -11.16934 -10.85279 -10.62986 -10.39908 -9.72739 -9.47856 -8.82028 -8.09824 -6.10217 0.36352 0.46345 1.41906 1.42813 1.49097 2.44449 2.73591 3.24887 3.32118 3.47288 3.91740 3.96571 4.01404 4.09373 4.27353 4.30648 4.40588 4.47476 4.62229 4.70132 4.75401 4.81055 4.86393 4.98999 5.01218 5.06369 5.11431 5.15728 5.22651 5.25463 5.32556 5.38509 5.50940 5.52349 5.56676 5.73629 5.76677 5.90220 5.94961 5.98912 6.21064 6.45852 6.77291 6.91739 7.04079 7.53699 9.01987 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022688 B = 0.005331 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.845564 B = 5250.563415 C = 5663.318750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.010 3.990 3 Si 0.936 3.064 4 H -0.260 1.260 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.493 4.493 8 H 0.083 0.917 9 C 0.202 3.798 10 N -0.533 5.533 11 C 0.088 3.912 12 C -0.056 4.056 13 C -0.131 4.131 14 C -0.098 4.098 15 C -0.152 4.152 16 C 0.096 3.904 17 O -0.512 6.512 18 C -0.142 4.142 19 C 0.098 3.902 20 C -0.109 4.109 21 C -0.113 4.113 22 C -0.120 4.120 23 C -0.154 4.154 24 H 0.258 0.742 25 H -0.011 1.011 26 H -0.009 1.009 27 H 0.040 0.960 28 H 0.065 0.935 29 H 0.130 0.870 30 H 0.155 0.845 31 H 0.147 0.853 32 H 0.408 0.592 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.760 -15.283 -3.062 17.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.187 4.187 3 Si 0.762 3.238 4 H -0.185 1.185 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.532 4.532 8 H 0.101 0.899 9 C 0.076 3.924 10 N -0.257 5.257 11 C -0.039 4.039 12 C -0.056 4.056 13 C -0.149 4.149 14 C -0.116 4.116 15 C -0.171 4.171 16 C 0.052 3.948 17 O -0.324 6.324 18 C -0.162 4.162 19 C -0.010 4.010 20 C -0.147 4.147 21 C -0.151 4.151 22 C -0.158 4.158 23 C -0.192 4.192 24 H 0.067 0.933 25 H 0.006 0.994 26 H 0.009 0.991 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.148 0.852 30 H 0.172 0.828 31 H 0.165 0.835 32 H 0.266 0.734 33 H 0.131 0.869 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.354 -14.741 -2.745 17.165 hybrid contribution -1.220 0.980 -0.155 1.573 sum 7.134 -13.761 -2.901 15.769 Atomic orbital electron populations 1.70067 1.07419 1.27114 1.53277 1.25582 0.95239 1.01862 0.95987 0.85956 0.78655 0.79967 0.79211 1.18495 1.21767 1.20038 1.21686 0.94518 0.89949 1.47015 0.89918 1.19617 0.90544 0.88900 0.93316 1.62320 1.25515 1.00869 1.36955 1.21041 0.94110 0.88674 1.00116 1.19674 0.97389 0.95355 0.93213 1.21256 0.98345 0.96692 0.98625 1.21281 0.96426 0.96817 0.97066 1.21607 1.01893 1.01255 0.92342 1.18560 0.95578 0.95730 0.84911 1.84782 1.58559 1.64316 1.24791 1.21300 0.98849 0.98820 0.97189 1.22144 0.93390 0.97407 0.88061 1.22522 0.95670 0.97992 0.98480 1.22415 0.96248 0.98775 0.97676 1.22372 0.95226 0.98651 0.99523 1.22818 1.01620 0.96992 0.97799 0.93327 0.99350 0.99060 0.94211 0.91660 0.85173 0.82752 0.83516 0.73380 0.86916 0.90721 0.91934 0.92233 0.90445 0.92225 0.92809 0.92115 0.93133 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.21 13.29 21.45 0.28 -54.92 16 2 C 0.01 0.57 5.14 84.65 0.43 1.00 16 3 Si 0.94 43.63 28.51 68.60 1.96 45.59 16 4 H -0.26 -11.49 7.09 99.48 0.71 -10.78 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.49 -26.14 5.23 25.60 0.13 -26.00 16 8 H 0.08 4.30 3.91 -2.91 -0.01 4.28 16 9 C 0.20 10.28 4.18 85.56 0.36 10.64 16 10 N -0.53 -22.38 4.39 -875.81 -3.84 -26.22 16 11 C 0.09 3.16 5.03 85.56 0.43 3.59 16 12 C -0.06 -1.70 5.05 -19.88 -0.10 -1.80 16 13 C -0.13 -3.29 8.43 22.28 0.19 -3.10 16 14 C -0.10 -2.02 10.04 22.26 0.22 -1.80 16 15 C -0.15 -3.28 9.99 22.37 0.22 -3.06 16 16 C 0.10 2.50 6.70 22.50 0.15 2.65 16 17 O -0.51 -11.79 13.50 -92.48 -1.25 -13.04 16 18 C -0.14 -4.33 9.66 22.37 0.22 -4.12 16 19 C 0.10 3.70 2.72 45.64 0.12 3.82 16 20 C -0.11 -4.00 5.88 31.69 0.19 -3.82 16 21 C -0.11 -3.76 6.90 31.91 0.22 -3.54 16 22 C -0.12 -4.65 6.17 31.67 0.20 -4.45 16 23 C -0.15 -6.14 5.63 31.32 0.18 -5.96 16 24 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16 25 H -0.01 -0.59 5.83 -2.39 -0.01 -0.60 16 26 H -0.01 -0.49 8.05 -2.39 -0.02 -0.50 16 27 H 0.04 1.36 7.94 -2.39 -0.02 1.34 16 28 H 0.06 2.41 7.90 -2.39 -0.02 2.39 16 29 H 0.13 2.96 7.49 -2.91 -0.02 2.93 16 30 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 31 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 32 H 0.41 5.01 9.06 -74.05 -0.67 4.34 16 33 H 0.11 3.67 8.06 -2.91 -0.02 3.65 16 34 H 0.07 2.49 5.54 -2.39 -0.01 2.48 16 35 H 0.06 2.69 5.40 -2.39 -0.01 2.68 16 36 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.06 2.75 4.68 -2.39 -0.01 2.74 16 41 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.07 3.50 3.98 -2.39 -0.01 3.49 16 Total: -1.00 -63.70 320.73 0.67 -63.03 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.36 Total: 21.50 kcal Atomic # 6 Polarization: -39.11 SS G_CDS: 3.16 Total: -35.95 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -3.56 Total: -81.14 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -1.25 Total: -13.04 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.96 Total: 45.59 kcal Total: -63.70 0.67 -63.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203859980.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.135 kcal (2) G-P(sol) polarization free energy of solvation -63.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds