Wall clock time and date at job start Mon Mar 30 2020 01:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99921 * 2 1 4 4 H 1.48500 * 109.46856 * 270.00336 * 3 2 1 5 5 H 1.48492 * 109.47125 * 30.00094 * 3 2 1 6 6 H 1.48495 * 109.47158 * 150.00609 * 3 2 1 7 7 C 1.37878 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00012 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00207 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47262 * 177.41720 * 9 7 2 11 11 C 1.46906 * 110.99822 * 209.31077 * 10 9 7 12 12 C 1.50696 * 109.46999 * 160.87913 * 11 10 9 13 13 C 1.38267 * 119.94504 * 275.14775 * 12 11 10 14 14 C 1.38146 * 120.05540 * 179.72758 * 13 12 11 15 15 C 1.38733 * 119.94568 * 0.56775 * 14 13 12 16 16 O 1.35891 * 120.05864 * 179.68628 * 15 14 13 17 17 C 1.38740 * 119.88335 * 359.70686 * 15 14 13 18 18 C 1.38141 * 119.94804 * 359.97438 * 17 15 14 19 19 C 1.46903 * 111.00117 * 85.35941 * 10 9 7 20 20 C 1.54958 * 110.92110 * 310.11500 * 19 10 9 21 21 C 1.54262 * 104.16196 * 156.29600 * 20 19 10 22 22 C 1.53873 * 106.63916 * 336.44466 * 21 20 19 23 23 C 1.54268 * 106.59701 * 359.97438 * 22 21 20 24 24 H 0.96993 * 119.99812 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46746 * 57.41211 * 9 7 2 26 26 H 1.09003 * 109.46731 * 297.42012 * 9 7 2 27 27 H 1.09000 * 109.46858 * 280.88193 * 11 10 9 28 28 H 1.08997 * 109.46799 * 40.88011 * 11 10 9 29 29 H 1.07997 * 119.96962 * 359.97438 * 13 12 11 30 30 H 1.08002 * 120.03168 * 180.25495 * 14 13 12 31 31 H 0.96703 * 113.99769 * 270.02118 * 16 15 14 32 32 H 1.07999 * 120.02177 * 179.97438 * 17 15 14 33 33 H 1.07997 * 119.97001 * 180.02562 * 18 17 15 34 34 H 1.08994 * 110.67383 * 186.80940 * 19 10 9 35 35 H 1.09005 * 110.48086 * 37.63888 * 20 19 10 36 36 H 1.09000 * 110.53026 * 274.98013 * 20 19 10 37 37 H 1.08996 * 110.03498 * 217.13527 * 21 20 19 38 38 H 1.09006 * 110.03319 * 95.75385 * 21 20 19 39 39 H 1.09000 * 110.03221 * 119.25680 * 22 21 20 40 40 H 1.08997 * 110.03415 * 240.64123 * 22 21 20 41 41 H 1.09005 * 110.48581 * 142.29014 * 23 22 21 42 42 H 1.09000 * 110.48510 * 264.79901 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 7 2.2045 -3.6149 -0.0636 11 6 1.6111 -4.7769 -0.7387 12 6 2.7067 -5.7015 -1.2033 13 6 3.3304 -5.4776 -2.4168 14 6 4.3388 -6.3205 -2.8424 15 6 4.7176 -7.3991 -2.0564 16 8 5.7049 -8.2334 -2.4758 17 6 4.0862 -7.6249 -0.8418 18 6 3.0829 -6.7753 -0.4177 19 6 2.6844 -3.9738 1.2777 20 6 3.1685 -2.7184 2.0464 21 6 3.0476 -3.1157 3.5321 22 6 1.9992 -4.2398 3.6037 23 6 1.5184 -4.4866 2.1588 24 1 -0.4849 0.8400 0.0004 25 1 0.5898 -2.5369 -0.8662 26 1 0.6600 -2.5774 0.9119 27 1 0.9588 -5.3065 -0.0444 28 1 1.0308 -4.4406 -1.5979 29 1 3.0316 -4.6408 -3.0307 30 1 4.8285 -6.1428 -3.7884 31 1 5.3908 -8.9808 -3.0030 32 1 4.3790 -8.4642 -0.2284 33 1 2.5915 -6.9505 0.5279 34 1 3.4782 -4.7181 1.2160 35 1 2.5266 -1.8653 1.8262 36 1 4.2047 -2.4922 1.7951 37 1 2.7186 -2.2602 4.1219 38 1 4.0076 -3.4765 3.9015 39 1 2.4506 -5.1463 4.0070 40 1 1.1618 -3.9301 4.2289 41 1 1.3510 -5.5502 1.9889 42 1 0.6084 -3.9212 1.9578 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204093337.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:21 Heat of formation + Delta-G solvation = -19.968837 kcal Electronic energy + Delta-G solvation = -21725.989170 eV Core-core repulsion = 18670.649488 eV Total energy + Delta-G solvation = -3055.339682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.71624 -38.53142 -36.68710 -34.39654 -32.64669 -30.81688 -30.31585 -28.20655 -27.23792 -26.54480 -24.02423 -22.59974 -21.96857 -21.15696 -19.60531 -18.50188 -18.30321 -16.42927 -15.84626 -15.61749 -15.45593 -15.03848 -14.73635 -14.49928 -13.93072 -13.54913 -13.30481 -13.16527 -12.65791 -12.44455 -12.16887 -11.95085 -11.55441 -11.42287 -11.08155 -11.04483 -10.80527 -10.62768 -10.54913 -10.41214 -10.31673 -10.15722 -10.04118 -9.86436 -9.27242 -9.25124 -8.78922 -8.39633 -8.26810 -7.16718 -6.01695 -3.98969 1.41153 1.54901 3.32677 3.39335 3.43226 3.79141 4.28602 4.43968 4.91007 5.06885 5.11593 5.19655 5.25415 5.28115 5.34742 5.52669 5.62645 5.67055 5.87962 5.95909 6.01369 6.08091 6.15834 6.18840 6.23192 6.25918 6.32625 6.38151 6.49211 6.54453 6.57321 6.61481 6.78775 6.91155 7.00002 7.02511 7.20407 7.36468 7.58851 7.68947 7.86117 8.14073 8.26163 8.55779 9.06512 9.60720 11.07700 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017364 B = 0.005381 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.145480 B = 5202.163500 C = 6063.168678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.493 4.493 8 H 0.067 0.933 9 C 0.186 3.814 10 N -0.522 5.522 11 C 0.087 3.913 12 C -0.064 4.064 13 C -0.081 4.081 14 C -0.146 4.146 15 C 0.088 3.912 16 O -0.502 6.502 17 C -0.148 4.148 18 C -0.101 4.101 19 C 0.093 3.907 20 C -0.136 4.136 21 C -0.124 4.124 22 C -0.115 4.115 23 C -0.160 4.160 24 H 0.260 0.740 25 H 0.025 0.975 26 H 0.006 0.994 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.129 0.871 30 H 0.123 0.877 31 H 0.384 0.616 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.067 0.933 35 H 0.127 0.873 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.550 -14.045 -0.352 14.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.531 4.531 8 H 0.085 0.915 9 C 0.061 3.939 10 N -0.244 5.244 11 C -0.041 4.041 12 C -0.064 4.064 13 C -0.100 4.100 14 C -0.165 4.165 15 C 0.043 3.957 16 O -0.312 6.312 17 C -0.166 4.166 18 C -0.120 4.120 19 C -0.016 4.016 20 C -0.173 4.173 21 C -0.163 4.163 22 C -0.154 4.154 23 C -0.199 4.199 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.024 0.976 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.147 0.853 30 H 0.141 0.859 31 H 0.238 0.762 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.086 0.914 35 H 0.145 0.855 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.157 -13.347 -0.334 14.313 hybrid contribution -0.484 0.253 0.262 0.606 sum 4.673 -13.094 -0.073 13.903 Atomic orbital electron populations 1.69950 1.06008 1.26699 1.51181 1.24981 0.94811 0.99134 0.95809 0.86575 0.79860 0.83383 0.78127 1.20745 1.21447 1.19744 1.21188 0.93772 0.89585 1.48593 0.91505 1.19900 0.90030 0.87494 0.96436 1.62235 1.40153 1.05194 1.16862 1.21107 0.92627 0.91554 0.98805 1.20055 0.97756 0.94679 0.93953 1.20983 0.94784 0.98068 0.96172 1.21380 0.98248 0.96452 1.00380 1.18434 0.90481 0.92786 0.93951 1.84836 1.32514 1.40366 1.73461 1.21293 0.97191 1.01143 0.97016 1.20948 0.97007 0.94702 0.99323 1.22541 0.95007 0.96606 0.87455 1.23015 1.02386 1.00605 0.91336 1.22147 0.97714 0.97738 0.98659 1.21979 0.98440 0.98093 0.96852 1.23035 1.01223 0.99768 0.95854 0.93000 0.95736 0.97611 0.94470 0.90431 0.85304 0.85864 0.76174 0.86062 0.86146 0.91449 0.85547 0.92848 0.92424 0.93234 0.92958 0.92645 0.93149 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.76 13.29 55.43 0.74 -25.02 16 2 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.49 -13.08 6.49 -34.44 -0.22 -13.31 16 8 H 0.07 1.80 7.16 -52.49 -0.38 1.42 16 9 C 0.19 4.54 4.23 -4.98 -0.02 4.52 16 10 N -0.52 -10.71 4.45 -227.09 -1.01 -11.72 16 11 C 0.09 1.52 5.00 -4.97 -0.02 1.49 16 12 C -0.06 -1.00 5.02 -104.60 -0.53 -1.52 16 13 C -0.08 -1.23 9.71 -39.60 -0.38 -1.61 16 14 C -0.15 -2.00 9.99 -39.43 -0.39 -2.39 16 15 C 0.09 1.17 6.70 -39.21 -0.26 0.90 16 16 O -0.50 -5.83 13.50 -19.40 -0.26 -6.09 16 17 C -0.15 -1.94 9.99 -39.43 -0.39 -2.33 16 18 C -0.10 -1.42 8.69 -39.61 -0.34 -1.77 16 19 C 0.09 1.74 2.84 -65.68 -0.19 1.56 16 20 C -0.14 -2.69 5.28 -25.04 -0.13 -2.82 16 21 C -0.12 -2.06 6.80 -25.62 -0.17 -2.24 16 22 C -0.12 -1.78 6.80 -25.61 -0.17 -1.96 16 23 C -0.16 -2.71 4.97 -25.07 -0.12 -2.84 16 24 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 25 H 0.02 0.65 7.43 -51.93 -0.39 0.26 16 26 H 0.01 0.16 5.56 -51.93 -0.29 -0.13 16 27 H 0.04 0.62 6.30 -51.93 -0.33 0.29 16 28 H 0.08 1.37 7.51 -51.93 -0.39 0.98 16 29 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 30 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 31 H 0.38 2.44 9.06 45.56 0.41 2.86 16 32 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.12 1.56 7.96 -52.49 -0.42 1.14 16 34 H 0.07 1.23 7.01 -51.93 -0.36 0.87 16 35 H 0.13 2.95 4.45 -51.93 -0.23 2.72 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.76 7.50 -51.93 -0.39 0.37 16 42 H 0.08 1.46 5.99 -51.93 -0.31 1.14 16 LS Contribution 329.20 15.07 4.96 4.96 Total: -1.00 -29.32 329.20 -9.64 -38.97 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -5.58 Total: 5.65 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -3.46 Total: -22.95 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.27 Total: -36.73 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.26 Total: -6.09 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.32 -9.64 -38.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204093337.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.000 kcal (2) G-P(sol) polarization free energy of solvation -29.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds