Wall clock time and date at job start Mon Mar 30 2020 01:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99921 * 2 1 4 4 H 1.48500 * 109.46856 * 270.00336 * 3 2 1 5 5 H 1.48492 * 109.47125 * 30.00094 * 3 2 1 6 6 H 1.48495 * 109.47158 * 150.00609 * 3 2 1 7 7 C 1.37878 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00012 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00207 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47262 * 177.41720 * 9 7 2 11 11 C 1.46906 * 110.99822 * 209.31077 * 10 9 7 12 12 C 1.50696 * 109.46999 * 160.87913 * 11 10 9 13 13 C 1.38267 * 119.94504 * 275.14775 * 12 11 10 14 14 C 1.38146 * 120.05540 * 179.72758 * 13 12 11 15 15 C 1.38733 * 119.94568 * 0.56775 * 14 13 12 16 16 O 1.35891 * 120.05864 * 179.68628 * 15 14 13 17 17 C 1.38740 * 119.88335 * 359.70686 * 15 14 13 18 18 C 1.38141 * 119.94804 * 359.97438 * 17 15 14 19 19 C 1.46903 * 111.00117 * 85.35941 * 10 9 7 20 20 C 1.54958 * 110.92110 * 310.11500 * 19 10 9 21 21 C 1.54262 * 104.16196 * 156.29600 * 20 19 10 22 22 C 1.53873 * 106.63916 * 336.44466 * 21 20 19 23 23 C 1.54268 * 106.59701 * 359.97438 * 22 21 20 24 24 H 0.96993 * 119.99812 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46746 * 57.41211 * 9 7 2 26 26 H 1.09003 * 109.46731 * 297.42012 * 9 7 2 27 27 H 1.09000 * 109.46858 * 280.88193 * 11 10 9 28 28 H 1.08997 * 109.46799 * 40.88011 * 11 10 9 29 29 H 1.07997 * 119.96962 * 359.97438 * 13 12 11 30 30 H 1.08002 * 120.03168 * 180.25495 * 14 13 12 31 31 H 0.96703 * 113.99769 * 270.02118 * 16 15 14 32 32 H 1.07999 * 120.02177 * 179.97438 * 17 15 14 33 33 H 1.07997 * 119.97001 * 180.02562 * 18 17 15 34 34 H 1.08994 * 110.67383 * 186.80940 * 19 10 9 35 35 H 1.09005 * 110.48086 * 37.63888 * 20 19 10 36 36 H 1.09000 * 110.53026 * 274.98013 * 20 19 10 37 37 H 1.08996 * 110.03498 * 217.13527 * 21 20 19 38 38 H 1.09006 * 110.03319 * 95.75385 * 21 20 19 39 39 H 1.09000 * 110.03221 * 119.25680 * 22 21 20 40 40 H 1.08997 * 110.03415 * 240.64123 * 22 21 20 41 41 H 1.09005 * 110.48581 * 142.29014 * 23 22 21 42 42 H 1.09000 * 110.48510 * 264.79901 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 7 2.2045 -3.6149 -0.0636 11 6 1.6111 -4.7769 -0.7387 12 6 2.7067 -5.7015 -1.2033 13 6 3.3304 -5.4776 -2.4168 14 6 4.3388 -6.3205 -2.8424 15 6 4.7176 -7.3991 -2.0564 16 8 5.7049 -8.2334 -2.4758 17 6 4.0862 -7.6249 -0.8418 18 6 3.0829 -6.7753 -0.4177 19 6 2.6844 -3.9738 1.2777 20 6 3.1685 -2.7184 2.0464 21 6 3.0476 -3.1157 3.5321 22 6 1.9992 -4.2398 3.6037 23 6 1.5184 -4.4866 2.1588 24 1 -0.4849 0.8400 0.0004 25 1 0.5898 -2.5369 -0.8662 26 1 0.6600 -2.5774 0.9119 27 1 0.9588 -5.3065 -0.0444 28 1 1.0308 -4.4406 -1.5979 29 1 3.0316 -4.6408 -3.0307 30 1 4.8285 -6.1428 -3.7884 31 1 5.3908 -8.9808 -3.0030 32 1 4.3790 -8.4642 -0.2284 33 1 2.5915 -6.9505 0.5279 34 1 3.4782 -4.7181 1.2160 35 1 2.5266 -1.8653 1.8262 36 1 4.2047 -2.4922 1.7951 37 1 2.7186 -2.2602 4.1219 38 1 4.0076 -3.4765 3.9015 39 1 2.4506 -5.1463 4.0070 40 1 1.1618 -3.9301 4.2289 41 1 1.3510 -5.5502 1.9889 42 1 0.6084 -3.9212 1.9578 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204093337.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:20 Heat of formation + Delta-G solvation = -38.199308 kcal Electronic energy + Delta-G solvation = -21726.779703 eV Core-core repulsion = 18670.649488 eV Total energy + Delta-G solvation = -3056.130215 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.88452 -39.89622 -37.73240 -35.91351 -34.59745 -31.88637 -31.67149 -29.69622 -28.92630 -27.99882 -25.58355 -23.79566 -23.62479 -22.32645 -20.96852 -20.05387 -19.27509 -18.40132 -17.35213 -16.76896 -16.69117 -16.50859 -16.06314 -15.96274 -15.46825 -14.80955 -14.60556 -14.36990 -14.28453 -14.06031 -13.42717 -13.23757 -13.07760 -12.88649 -12.69188 -12.61786 -12.43119 -12.26446 -12.10001 -11.94340 -11.74344 -11.58932 -11.31566 -11.29298 -11.16553 -10.93922 -10.48254 -9.85895 -9.39691 -8.82063 -8.11317 -6.15076 0.33278 0.47948 1.41950 1.42841 1.53392 2.43362 2.71554 3.17575 3.35052 3.46546 3.84662 3.91963 3.94796 4.03407 4.12752 4.21838 4.40471 4.49935 4.58688 4.65755 4.69699 4.78902 4.80391 4.85576 4.95320 5.00680 5.03611 5.13150 5.16678 5.19345 5.21382 5.34074 5.42372 5.51328 5.54208 5.56864 5.75983 5.79069 5.90864 5.96832 6.18305 6.54194 6.72573 6.92387 6.95704 7.48050 8.97100 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017364 B = 0.005381 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.145480 B = 5202.163500 C = 6063.168678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.954 3.046 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.492 4.492 8 H 0.059 0.941 9 C 0.205 3.795 10 N -0.533 5.533 11 C 0.092 3.908 12 C -0.082 4.082 13 C -0.095 4.095 14 C -0.152 4.152 15 C 0.095 3.905 16 O -0.509 6.509 17 C -0.147 4.147 18 C -0.099 4.099 19 C 0.095 3.905 20 C -0.141 4.141 21 C -0.120 4.120 22 C -0.111 4.111 23 C -0.154 4.154 24 H 0.261 0.739 25 H -0.005 1.005 26 H -0.013 1.013 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.119 0.881 30 H 0.138 0.862 31 H 0.409 0.591 32 H 0.146 0.854 33 H 0.134 0.866 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.356 -16.016 0.482 17.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.194 4.194 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.531 4.531 8 H 0.077 0.923 9 C 0.079 3.921 10 N -0.255 5.255 11 C -0.036 4.036 12 C -0.083 4.083 13 C -0.114 4.114 14 C -0.170 4.170 15 C 0.050 3.950 16 O -0.322 6.322 17 C -0.165 4.165 18 C -0.118 4.118 19 C -0.014 4.014 20 C -0.178 4.178 21 C -0.158 4.158 22 C -0.149 4.149 23 C -0.193 4.193 24 H 0.070 0.930 25 H 0.013 0.987 26 H 0.005 0.995 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.137 0.863 30 H 0.156 0.844 31 H 0.267 0.733 32 H 0.164 0.836 33 H 0.152 0.848 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.974 -15.351 0.488 16.868 hybrid contribution -0.978 0.749 -0.054 1.233 sum 5.996 -14.602 0.434 15.792 Atomic orbital electron populations 1.70064 1.07408 1.27418 1.52659 1.25723 0.95538 1.02388 0.95748 0.85609 0.78778 0.79484 0.78167 1.20359 1.21084 1.19089 1.21385 0.93415 0.90750 1.47547 0.92272 1.19504 0.89848 0.88685 0.94051 1.62138 1.39149 1.05714 1.18513 1.21043 0.93546 0.90859 0.98131 1.19879 0.98066 0.95455 0.94878 1.21001 0.95674 0.98458 0.96254 1.21529 0.97891 0.96390 1.01183 1.18525 0.89969 0.92652 0.93849 1.84771 1.32223 1.41184 1.73985 1.21536 0.96477 1.01420 0.97100 1.21063 0.97200 0.94049 0.99489 1.22566 0.95875 0.96366 0.86587 1.22889 1.00941 0.99777 0.94216 1.22115 0.99419 0.98245 0.96034 1.21983 0.98334 0.98879 0.95678 1.22939 0.99067 1.00562 0.96722 0.93017 0.98678 0.99496 0.93575 0.91895 0.86293 0.84423 0.73264 0.83642 0.84826 0.90119 0.89527 0.93484 0.92765 0.90880 0.89966 0.92275 0.90759 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.41 13.29 21.45 0.28 -55.12 16 2 C 0.00 0.19 5.46 84.65 0.46 0.66 16 3 Si 0.95 44.43 29.54 68.60 2.03 46.46 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.49 -27.13 6.49 25.60 0.17 -26.96 16 8 H 0.06 3.29 7.16 -2.91 -0.02 3.26 16 9 C 0.20 10.50 4.23 85.56 0.36 10.87 16 10 N -0.53 -22.39 4.45 -872.39 -3.88 -26.27 16 11 C 0.09 3.26 5.00 85.55 0.43 3.69 16 12 C -0.08 -2.51 5.02 -19.85 -0.10 -2.61 16 13 C -0.10 -2.85 9.71 22.25 0.22 -2.63 16 14 C -0.15 -3.90 9.99 22.37 0.22 -3.68 16 15 C 0.09 2.25 6.70 22.51 0.15 2.40 16 16 O -0.51 -10.04 13.50 -92.33 -1.25 -11.28 16 17 C -0.15 -3.38 9.99 22.37 0.22 -3.15 16 18 C -0.10 -2.56 8.69 22.25 0.19 -2.37 16 19 C 0.09 3.50 2.84 46.23 0.13 3.63 16 20 C -0.14 -5.56 5.28 31.69 0.17 -5.39 16 21 C -0.12 -3.77 6.80 31.32 0.21 -3.56 16 22 C -0.11 -3.15 6.80 31.32 0.21 -2.93 16 23 C -0.15 -5.06 4.97 31.67 0.16 -4.90 16 24 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 25 H 0.00 -0.28 7.43 -2.38 -0.02 -0.29 16 26 H -0.01 -0.68 5.56 -2.39 -0.01 -0.70 16 27 H 0.05 1.53 6.30 -2.39 -0.02 1.51 16 28 H 0.06 2.36 7.51 -2.39 -0.02 2.34 16 29 H 0.12 3.68 8.06 -2.91 -0.02 3.65 16 30 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 31 H 0.41 3.70 9.06 -74.06 -0.67 3.03 16 32 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.13 3.03 7.96 -2.91 -0.02 3.01 16 34 H 0.08 2.79 7.01 -2.39 -0.02 2.78 16 35 H 0.09 4.17 4.45 -2.38 -0.01 4.16 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.07 2.07 7.50 -2.38 -0.02 2.05 16 42 H 0.04 1.76 5.99 -2.39 -0.01 1.74 16 Total: -1.00 -64.48 329.20 0.74 -63.74 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.34 Total: 19.42 kcal Atomic # 6 Polarization: -40.16 SS G_CDS: 3.21 Total: -36.95 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -3.59 Total: -81.39 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -1.25 Total: -11.28 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -64.48 0.74 -63.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204093337.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.545 kcal (2) G-P(sol) polarization free energy of solvation -64.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds