Wall clock time and date at job start Mon Mar 30 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38289 * 119.92433 * 2 1 4 4 C 1.38100 * 120.07412 * 179.97438 * 3 2 1 5 5 C 1.38911 * 119.92568 * 359.97438 * 4 3 2 6 6 N 1.39675 * 120.07168 * 179.97438 * 5 4 3 7 7 C 1.46847 * 111.00097 * 304.20502 * 6 5 4 8 8 C 1.53043 * 109.52313 * 174.16581 * 7 6 5 9 9 C 1.53112 * 109.28022 * 59.17682 * 8 7 6 10 10 O 1.42896 * 109.52302 * 182.44272 * 9 8 7 11 11 C 1.42908 * 113.99769 * 269.68438 * 10 9 8 12 12 C 1.50703 * 109.46995 * 179.97438 * 11 10 9 13 13 H 1.08008 * 120.00089 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00171 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99751 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00266 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46732 * 59.99874 * 16 14 12 18 18 H 1.48497 * 109.47324 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47080 * 300.00006 * 16 14 12 20 20 C 1.53118 * 109.16204 * 302.34774 * 9 8 7 21 21 C 1.46848 * 110.99923 * 179.97438 * 6 5 4 22 22 C 1.38908 * 119.85249 * 0.25063 * 5 4 3 23 23 C 1.38109 * 119.92333 * 359.49493 * 22 5 4 24 24 H 1.09001 * 109.47254 * 90.00339 * 1 2 3 25 25 H 1.09002 * 109.47310 * 210.00234 * 1 2 3 26 26 H 1.09000 * 109.47388 * 330.00170 * 1 2 3 27 27 H 1.08003 * 119.96259 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.03876 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.46628 * 294.17806 * 7 6 5 30 30 H 1.09003 * 109.46158 * 54.14653 * 7 6 5 31 31 H 1.09004 * 109.49779 * 299.24018 * 8 7 6 32 32 H 1.08999 * 109.53512 * 179.14270 * 8 7 6 33 33 H 1.09001 * 109.57078 * 62.28400 * 9 8 7 34 34 H 1.08989 * 109.47431 * 299.99727 * 11 10 9 35 35 H 1.08998 * 109.47034 * 60.00056 * 11 10 9 36 36 H 0.97004 * 119.99912 * 180.02562 * 15 14 12 37 37 H 1.08992 * 109.50367 * 297.71286 * 20 9 8 38 38 H 1.09002 * 109.53418 * 177.61454 * 20 9 8 39 39 H 1.09005 * 109.46506 * 305.85496 * 21 6 5 40 40 H 1.09003 * 109.46298 * 65.83254 * 21 6 5 41 41 H 1.08003 * 120.03892 * 179.72783 * 22 5 4 42 42 H 1.07992 * 119.96279 * 180.25242 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5778 1.2021 0.0005 5 6 4.2740 0.0001 0.0016 6 7 5.6707 0.0001 0.0016 7 6 6.1969 0.7698 -1.1329 8 6 7.7199 0.8706 -1.0201 9 6 8.3205 -0.5377 -1.0123 10 8 9.7376 -0.4516 -0.8500 11 6 10.4596 -0.3691 -2.0805 12 6 11.9362 -0.2822 -1.7917 13 1 12.2880 -0.2889 -0.7705 14 6 12.8379 -0.1931 -2.8309 15 7 12.4094 -0.1845 -4.0743 16 14 14.6681 -0.0862 -2.4730 17 1 15.0982 -1.2964 -1.7276 18 1 15.4184 -0.0003 -3.7516 19 1 14.9428 1.1225 -1.6552 20 6 7.7199 -1.3338 0.1496 21 6 6.1970 -1.3708 0.0035 22 6 3.5779 -1.2020 -0.0031 23 6 2.1968 -1.1985 0.0017 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6550 2.1328 -0.0004 28 1 4.1160 2.1385 0.0010 29 1 5.9342 0.2691 -2.0647 30 1 5.7650 1.7706 -1.1243 31 1 7.9830 1.3836 -0.0950 32 1 8.1121 1.4289 -1.8701 33 1 8.0914 -1.0377 -1.9534 34 1 10.2580 -1.2565 -2.6803 35 1 10.1440 0.5190 -2.6280 36 1 13.0438 -0.1222 -4.8054 37 1 7.9831 -0.8555 1.0930 38 1 8.1116 -2.3509 0.1355 39 1 5.7652 -1.9245 0.8372 40 1 5.9344 -1.8619 -0.9336 41 1 4.1161 -2.1384 -0.0067 42 1 1.6551 -2.1327 0.0021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205603838.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:15 Heat of formation + Delta-G solvation = -28.052413 kcal Electronic energy + Delta-G solvation = -20744.747948 eV Core-core repulsion = 17689.057736 eV Total energy + Delta-G solvation = -3055.690212 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.43161 -38.34666 -36.45424 -33.39389 -32.49992 -31.65287 -30.57920 -30.32773 -27.31256 -26.03443 -24.05353 -23.41783 -22.30309 -21.67364 -20.83808 -19.58427 -17.58574 -16.43846 -15.75492 -15.72765 -15.28538 -14.92047 -14.54185 -14.44086 -14.12301 -13.89662 -13.74883 -13.62513 -13.49924 -12.68868 -12.59206 -12.37317 -12.24013 -11.80524 -11.72102 -11.54836 -11.20156 -11.09851 -11.01021 -10.90924 -10.72360 -10.43319 -10.27480 -9.84488 -9.57832 -9.12586 -9.04487 -8.81618 -8.16006 -7.76998 -6.12276 -4.14126 1.26174 1.30314 3.31553 3.34170 3.38110 3.51177 3.82962 4.31901 4.62032 4.74339 4.76637 4.84920 4.93847 5.02074 5.11657 5.24087 5.27914 5.29225 5.37240 5.38776 5.46671 5.49848 5.58471 5.66426 5.72641 5.82038 5.86001 5.87700 6.00071 6.09933 6.21251 6.29894 6.33286 6.49785 6.50969 6.60170 6.73943 7.01408 7.10179 7.28515 7.41336 7.78398 8.14185 8.56914 8.99194 9.50820 10.99133 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.054516 B = 0.002879 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.482999 B = 9723.521544 C = 9879.466365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.123 4.123 3 C -0.095 4.095 4 C -0.140 4.140 5 C 0.115 3.885 6 N -0.489 5.489 7 C 0.064 3.936 8 C -0.140 4.140 9 C 0.089 3.911 10 O -0.387 6.387 11 C 0.196 3.804 12 C -0.516 4.516 13 H 0.066 0.934 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.908 3.092 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.114 4.114 21 C 0.056 3.944 22 C -0.171 4.171 23 C -0.094 4.094 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.121 0.879 28 H 0.125 0.875 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.004 0.996 35 H 0.005 0.995 36 H 0.265 0.735 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.045 0.955 41 H 0.127 0.873 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.226 -0.135 6.728 23.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.124 4.124 3 C -0.114 4.114 4 C -0.160 4.160 5 C 0.017 3.983 6 N -0.204 5.204 7 C -0.061 4.061 8 C -0.178 4.178 9 C 0.030 3.970 10 O -0.306 6.306 11 C 0.121 3.879 12 C -0.554 4.554 13 H 0.084 0.916 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.735 3.265 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.152 4.152 21 C -0.071 4.071 22 C -0.192 4.192 23 C -0.112 4.112 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.139 0.861 28 H 0.143 0.857 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.022 0.978 35 H 0.023 0.977 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.064 0.936 41 H 0.145 0.855 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.791 0.109 7.123 22.926 hybrid contribution 0.660 -0.258 -0.859 1.114 sum -21.131 -0.149 6.263 22.040 Atomic orbital electron populations 1.20713 0.91492 1.02393 1.01940 1.19805 0.95884 0.93205 1.03478 1.20866 0.93626 0.97427 0.99468 1.20805 0.93955 0.96932 1.04313 1.19037 0.88391 0.93671 0.97176 1.59007 1.04098 1.15286 1.41990 1.22221 0.96126 0.97850 0.89887 1.22148 0.92573 0.99399 1.03666 1.21852 0.84489 0.93777 0.96904 1.87906 1.14313 1.94306 1.34096 1.20232 0.91277 0.95211 0.81130 1.21029 0.89997 1.50624 0.93739 0.91588 1.24952 0.99691 0.95140 0.94720 1.69952 1.35058 1.50344 0.98465 0.86391 0.83730 0.78884 0.77452 1.19999 1.21160 1.19983 1.21665 0.92296 1.01150 1.00125 1.22263 0.95830 0.87798 1.01174 1.21340 0.94649 0.97472 1.05749 1.20856 0.93678 0.97390 0.99296 0.91625 0.91893 0.91859 0.86137 0.85732 0.93898 0.90112 0.90366 0.90647 0.93389 0.97813 0.97721 0.92592 0.90351 0.90592 0.89860 0.93646 0.85505 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.00 0.36 -0.40 16 2 C -0.12 -1.19 5.88 -104.59 -0.62 -1.81 16 3 C -0.10 -0.96 9.69 -39.61 -0.38 -1.34 16 4 C -0.14 -1.60 9.16 -39.38 -0.36 -1.96 16 5 C 0.12 1.44 5.64 -83.79 -0.47 0.97 16 6 N -0.49 -6.56 4.70 -171.15 -0.80 -7.37 16 7 C 0.06 0.88 5.26 -3.83 -0.02 0.86 16 8 C -0.14 -2.30 5.72 -26.65 -0.15 -2.45 16 9 C 0.09 1.65 2.68 -26.61 -0.07 1.58 16 10 O -0.39 -9.30 9.98 -35.23 -0.35 -9.65 16 11 C 0.20 5.35 5.50 36.01 0.20 5.55 16 12 C -0.52 -15.21 9.43 -34.44 -0.32 -15.53 16 13 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 16 Si 0.91 21.87 29.54 -169.99 -5.02 16.85 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 C -0.11 -1.76 5.75 -26.65 -0.15 -1.91 16 21 C 0.06 0.72 4.15 -3.84 -0.02 0.70 16 22 C -0.17 -1.94 8.82 -39.38 -0.35 -2.29 16 23 C -0.09 -0.94 9.69 -39.61 -0.38 -1.33 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 26 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 27 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 28 H 0.12 1.32 7.16 -52.49 -0.38 0.95 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.98 6.71 -51.93 -0.35 0.63 16 31 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.07 1.30 7.96 -51.93 -0.41 0.89 16 33 H 0.05 0.90 7.79 -51.93 -0.40 0.50 16 34 H 0.00 0.12 8.09 -51.94 -0.42 -0.30 16 35 H 0.00 0.14 7.96 -51.93 -0.41 -0.27 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.08 0.94 7.00 -51.93 -0.36 0.58 16 40 H 0.05 0.56 7.72 -51.93 -0.40 0.16 16 41 H 0.13 1.30 5.81 -52.48 -0.30 0.99 16 42 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 336.95 15.07 5.08 5.08 Total: -1.00 -31.27 336.95 -9.99 -41.26 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -6.79 Total: -2.18 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -2.84 Total: -17.83 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: -0.07 Total: -33.52 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -0.35 Total: -9.65 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.27 -9.99 -41.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205603838.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.211 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds