Wall clock time and date at job start Mon Mar 30 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38289 * 119.92433 * 2 1 4 4 C 1.38100 * 120.07412 * 179.97438 * 3 2 1 5 5 C 1.38911 * 119.92568 * 359.97438 * 4 3 2 6 6 N 1.39675 * 120.07168 * 179.97438 * 5 4 3 7 7 C 1.46847 * 111.00097 * 304.20502 * 6 5 4 8 8 C 1.53043 * 109.52313 * 174.16581 * 7 6 5 9 9 C 1.53112 * 109.28022 * 59.17682 * 8 7 6 10 10 O 1.42896 * 109.52302 * 182.44272 * 9 8 7 11 11 C 1.42908 * 113.99769 * 269.68438 * 10 9 8 12 12 C 1.50703 * 109.46995 * 179.97438 * 11 10 9 13 13 H 1.08008 * 120.00089 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00171 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99751 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00266 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46732 * 59.99874 * 16 14 12 18 18 H 1.48497 * 109.47324 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47080 * 300.00006 * 16 14 12 20 20 C 1.53118 * 109.16204 * 302.34774 * 9 8 7 21 21 C 1.46848 * 110.99923 * 179.97438 * 6 5 4 22 22 C 1.38908 * 119.85249 * 0.25063 * 5 4 3 23 23 C 1.38109 * 119.92333 * 359.49493 * 22 5 4 24 24 H 1.09001 * 109.47254 * 90.00339 * 1 2 3 25 25 H 1.09002 * 109.47310 * 210.00234 * 1 2 3 26 26 H 1.09000 * 109.47388 * 330.00170 * 1 2 3 27 27 H 1.08003 * 119.96259 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.03876 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.46628 * 294.17806 * 7 6 5 30 30 H 1.09003 * 109.46158 * 54.14653 * 7 6 5 31 31 H 1.09004 * 109.49779 * 299.24018 * 8 7 6 32 32 H 1.08999 * 109.53512 * 179.14270 * 8 7 6 33 33 H 1.09001 * 109.57078 * 62.28400 * 9 8 7 34 34 H 1.08989 * 109.47431 * 299.99727 * 11 10 9 35 35 H 1.08998 * 109.47034 * 60.00056 * 11 10 9 36 36 H 0.97004 * 119.99912 * 180.02562 * 15 14 12 37 37 H 1.08992 * 109.50367 * 297.71286 * 20 9 8 38 38 H 1.09002 * 109.53418 * 177.61454 * 20 9 8 39 39 H 1.09005 * 109.46506 * 305.85496 * 21 6 5 40 40 H 1.09003 * 109.46298 * 65.83254 * 21 6 5 41 41 H 1.08003 * 120.03892 * 179.72783 * 22 5 4 42 42 H 1.07992 * 119.96279 * 180.25242 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5778 1.2021 0.0005 5 6 4.2740 0.0001 0.0016 6 7 5.6707 0.0001 0.0016 7 6 6.1969 0.7698 -1.1329 8 6 7.7199 0.8706 -1.0201 9 6 8.3205 -0.5377 -1.0123 10 8 9.7376 -0.4516 -0.8500 11 6 10.4596 -0.3691 -2.0805 12 6 11.9362 -0.2822 -1.7917 13 1 12.2880 -0.2889 -0.7705 14 6 12.8379 -0.1931 -2.8309 15 7 12.4094 -0.1845 -4.0743 16 14 14.6681 -0.0862 -2.4730 17 1 15.0982 -1.2964 -1.7276 18 1 15.4184 -0.0003 -3.7516 19 1 14.9428 1.1225 -1.6552 20 6 7.7199 -1.3338 0.1496 21 6 6.1970 -1.3708 0.0035 22 6 3.5779 -1.2020 -0.0031 23 6 2.1968 -1.1985 0.0017 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6550 2.1328 -0.0004 28 1 4.1160 2.1385 0.0010 29 1 5.9342 0.2691 -2.0647 30 1 5.7650 1.7706 -1.1243 31 1 7.9830 1.3836 -0.0950 32 1 8.1121 1.4289 -1.8701 33 1 8.0914 -1.0377 -1.9534 34 1 10.2580 -1.2565 -2.6803 35 1 10.1440 0.5190 -2.6280 36 1 13.0438 -0.1222 -4.8054 37 1 7.9831 -0.8555 1.0930 38 1 8.1116 -2.3509 0.1355 39 1 5.7652 -1.9245 0.8372 40 1 5.9344 -1.8619 -0.9336 41 1 4.1161 -2.1384 -0.0067 42 1 1.6551 -2.1327 0.0021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205603838.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:15 Heat of formation + Delta-G solvation = -45.926782 kcal Electronic energy + Delta-G solvation = -20745.523039 eV Core-core repulsion = 17689.057736 eV Total energy + Delta-G solvation = -3056.465303 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.41522 -39.55565 -37.93426 -35.12721 -34.10076 -32.64284 -31.60533 -31.32327 -29.36139 -26.97681 -25.22299 -24.72514 -24.14604 -22.68179 -21.82794 -20.80518 -18.75114 -18.43097 -17.49672 -16.66765 -16.50535 -16.18968 -16.15603 -15.77665 -15.38196 -14.94179 -14.84508 -14.49290 -14.46691 -14.21303 -14.07805 -13.64283 -13.18248 -13.03702 -12.92844 -12.89245 -12.72304 -12.43064 -12.29150 -12.22222 -12.14377 -12.06870 -11.74132 -11.40823 -11.28744 -10.83737 -10.49659 -10.16838 -9.83993 -8.66867 -8.34098 -6.46903 0.44177 0.50745 1.38762 1.43569 1.52012 2.32844 2.59741 2.92342 2.99460 3.07342 3.71228 3.75020 3.94086 4.06547 4.07823 4.10971 4.16674 4.23753 4.32413 4.45747 4.49873 4.54833 4.66080 4.68729 4.71158 4.79394 4.82453 4.89877 4.90417 4.99108 5.08639 5.15825 5.20280 5.24009 5.25490 5.38436 5.46882 5.53835 5.76129 5.89985 5.94425 6.02996 6.37715 6.51815 6.80186 7.25170 8.77901 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.054516 B = 0.002879 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.482999 B = 9723.521544 C = 9879.466365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.124 4.124 3 C -0.101 4.101 4 C -0.150 4.150 5 C 0.092 3.908 6 N -0.497 5.497 7 C 0.074 3.926 8 C -0.132 4.132 9 C 0.077 3.923 10 O -0.402 6.402 11 C 0.212 3.788 12 C -0.551 4.551 13 H 0.061 0.939 14 C 0.006 3.994 15 N -0.930 5.930 16 Si 0.983 3.017 17 H -0.265 1.265 18 H -0.274 1.274 19 H -0.265 1.265 20 C -0.106 4.106 21 C 0.063 3.937 22 C -0.179 4.179 23 C -0.101 4.101 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.141 0.859 28 H 0.127 0.873 29 H 0.042 0.958 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.041 0.959 34 H -0.017 1.017 35 H -0.014 1.014 36 H 0.271 0.729 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.050 0.950 41 H 0.135 0.865 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.442 -0.279 7.467 24.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.171 4.171 5 C -0.006 4.006 6 N -0.212 5.212 7 C -0.051 4.051 8 C -0.170 4.170 9 C 0.018 3.982 10 O -0.322 6.322 11 C 0.138 3.862 12 C -0.588 4.588 13 H 0.080 0.920 14 C -0.192 4.192 15 N -0.569 5.569 16 Si 0.806 3.194 17 H -0.190 1.190 18 H -0.199 1.199 19 H -0.190 1.190 20 C -0.144 4.144 21 C -0.063 4.063 22 C -0.200 4.200 23 C -0.119 4.119 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.159 0.841 28 H 0.145 0.855 29 H 0.060 0.940 30 H 0.115 0.885 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.001 0.999 35 H 0.004 0.996 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.122 0.878 40 H 0.069 0.931 41 H 0.152 0.848 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -23.047 -0.038 7.874 24.355 hybrid contribution 0.884 -0.216 -1.094 1.423 sum -22.163 -0.254 6.780 23.178 Atomic orbital electron populations 1.20767 0.89468 1.03455 1.02759 1.20206 0.97472 0.92916 1.01894 1.21157 0.93221 0.98655 0.98921 1.20971 0.94773 0.96789 1.04541 1.19141 0.87697 0.94638 0.99075 1.59010 1.05152 1.15286 1.41787 1.22089 0.93693 0.99054 0.90298 1.22020 0.94816 0.97582 1.02623 1.22235 0.81868 0.95780 0.98267 1.87852 1.17375 1.94484 1.32514 1.19822 0.91287 0.93249 0.81892 1.21372 0.91354 1.52154 0.93950 0.92030 1.25977 1.05121 0.93888 0.94251 1.70062 1.37149 1.50222 0.99498 0.85230 0.76895 0.79405 0.77875 1.18960 1.19909 1.19000 1.21611 0.94172 1.00538 0.98085 1.22220 0.93610 0.88163 1.02320 1.21518 0.95417 0.97369 1.05697 1.21162 0.93368 0.98592 0.98783 0.90810 0.90870 0.90857 0.84136 0.85528 0.94019 0.88521 0.90984 0.92180 0.94040 0.99885 0.99592 0.91992 0.90930 0.90210 0.87787 0.93143 0.84775 0.84264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.01 71.23 0.71 -0.47 16 2 C -0.12 -2.10 5.88 -19.84 -0.12 -2.21 16 3 C -0.10 -1.82 9.69 22.25 0.22 -1.61 16 4 C -0.15 -3.25 9.16 22.40 0.21 -3.04 16 5 C 0.09 2.18 5.64 38.21 0.22 2.40 16 6 N -0.50 -12.98 4.70 -695.38 -3.27 -16.24 16 7 C 0.07 2.01 5.26 86.33 0.45 2.47 16 8 C -0.13 -4.51 5.72 30.65 0.18 -4.33 16 9 C 0.08 2.95 2.68 30.67 0.08 3.04 16 10 O -0.40 -20.17 9.98 -148.98 -1.49 -21.65 16 11 C 0.21 12.16 5.50 71.24 0.39 12.55 16 12 C -0.55 -33.31 9.43 25.60 0.24 -33.07 16 13 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 14 C 0.01 0.36 5.46 84.65 0.46 0.82 16 15 N -0.93 -56.40 13.29 21.45 0.28 -56.11 16 16 Si 0.98 44.72 29.54 68.60 2.03 46.74 16 17 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 20 C -0.11 -3.27 5.75 30.64 0.18 -3.10 16 21 C 0.06 1.57 4.15 86.32 0.36 1.93 16 22 C -0.18 -3.75 8.82 22.40 0.20 -3.56 16 23 C -0.10 -1.79 9.69 22.25 0.22 -1.58 16 24 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16 26 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16 27 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 28 H 0.13 2.57 7.16 -2.91 -0.02 2.55 16 29 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.10 2.31 6.71 -2.39 -0.02 2.29 16 31 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 32 H 0.06 2.19 7.96 -2.39 -0.02 2.17 16 33 H 0.04 1.64 7.79 -2.39 -0.02 1.62 16 34 H -0.02 -0.99 8.09 -2.39 -0.02 -1.01 16 35 H -0.01 -0.81 7.96 -2.39 -0.02 -0.83 16 36 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.10 2.17 7.00 -2.38 -0.02 2.15 16 40 H 0.05 1.20 7.72 -2.39 -0.02 1.19 16 41 H 0.13 2.49 5.81 -2.91 -0.02 2.48 16 42 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -67.83 336.95 2.52 -65.31 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.98 Total: 11.72 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 3.99 Total: -29.76 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -2.98 Total: -72.36 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -1.49 Total: -21.65 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -67.83 2.52 -65.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205603838.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.383 kcal (2) G-P(sol) polarization free energy of solvation -67.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds