Wall clock time and date at job start Mon Mar 30 2020 01:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99707 * 2 1 4 4 H 1.48493 * 109.47298 * 270.00246 * 3 2 1 5 5 H 1.48502 * 109.47252 * 30.00472 * 3 2 1 6 6 H 1.48502 * 109.46832 * 150.00150 * 3 2 1 7 7 C 1.37877 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99884 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99958 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47026 * 180.02562 * 9 7 2 11 11 O 1.42898 * 109.47077 * 180.02562 * 10 9 7 12 12 C 1.42907 * 113.99893 * 179.97438 * 11 10 9 13 13 H 1.08999 * 110.64659 * 328.30061 * 12 11 10 14 14 C 1.54598 * 110.72463 * 91.45250 * 12 11 10 15 15 C 1.53995 * 105.14317 * 140.31187 * 14 12 11 16 16 N 1.47911 * 107.05485 * 1.22533 * 15 14 12 17 17 C 1.46894 * 110.99801 * 214.15609 * 16 15 14 18 18 C 1.50698 * 109.47385 * 69.87203 * 17 16 15 19 19 C 1.38228 * 120.00195 * 270.21139 * 18 17 16 20 20 C 1.38238 * 120.00114 * 180.26174 * 19 18 17 21 21 C 1.38234 * 119.99675 * 359.50218 * 20 19 18 22 22 C 1.38235 * 120.00220 * 0.28720 * 21 20 19 23 23 C 1.38234 * 119.99720 * 89.99924 * 18 17 16 24 24 C 1.48534 * 105.81851 * 334.66954 * 16 15 14 25 25 H 0.96997 * 120.00461 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46586 * 60.00551 * 9 7 2 27 27 H 1.08996 * 109.47198 * 300.00218 * 9 7 2 28 28 H 1.09001 * 109.47560 * 60.00163 * 10 9 7 29 29 H 1.09009 * 109.47491 * 300.00250 * 10 9 7 30 30 H 1.09006 * 110.30636 * 21.39584 * 14 12 11 31 31 H 1.08998 * 110.30990 * 259.23127 * 14 12 11 32 32 H 1.08997 * 109.91839 * 241.87375 * 15 14 12 33 33 H 1.09000 * 110.08197 * 120.66494 * 15 14 12 34 34 H 1.09010 * 109.47013 * 309.87312 * 17 16 15 35 35 H 1.09000 * 109.46834 * 189.87633 * 17 16 15 36 36 H 1.08004 * 120.00270 * 0.03576 * 19 18 17 37 37 H 1.08002 * 120.00519 * 179.78838 * 20 19 18 38 38 H 1.07999 * 120.00009 * 180.25939 * 21 20 19 39 39 H 1.07996 * 120.00471 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.00294 * 0.02562 * 23 18 17 41 41 H 1.08999 * 110.66337 * 157.64114 * 24 16 15 42 42 H 1.08997 * 110.66425 * 280.76940 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 8 5.4506 -2.6364 -0.0022 12 6 6.0318 -3.9419 -0.0027 13 1 5.3954 -4.6462 0.5330 14 6 6.2879 -4.4262 -1.4484 15 6 7.6472 -5.1480 -1.3960 16 7 8.1112 -5.0978 0.0076 17 6 9.5741 -4.9821 0.0745 18 6 9.9924 -3.6157 -0.4039 19 6 10.2643 -3.4054 -1.7428 20 6 10.6532 -2.1533 -2.1808 21 6 10.7603 -1.1090 -1.2815 22 6 10.4842 -1.3182 0.0568 23 6 10.1000 -2.5715 0.4955 24 6 7.4551 -3.9085 0.6087 25 1 -0.4851 0.8400 0.0004 26 1 3.8752 -0.6804 0.8889 27 1 3.8746 -0.6799 -0.8911 28 1 3.6580 -3.1497 -0.8925 29 1 3.6586 -3.1510 0.8875 30 1 6.3369 -3.5762 -2.1290 31 1 5.5046 -5.1170 -1.7603 32 1 8.3628 -4.6394 -2.0420 33 1 7.5329 -6.1848 -1.7124 34 1 10.0282 -5.7438 -0.5594 35 1 9.9029 -5.1230 1.1042 36 1 10.1763 -4.2203 -2.4462 37 1 10.8690 -1.9898 -3.2263 38 1 11.0601 -0.1297 -1.6243 39 1 10.5683 -0.5024 0.7595 40 1 9.8847 -2.7350 1.5411 41 1 7.4099 -4.0015 1.6937 42 1 7.9761 -2.9953 0.3211 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205620868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:56 Heat of formation + Delta-G solvation = -17.278735 kcal Electronic energy + Delta-G solvation = -21111.378870 eV Core-core repulsion = 18056.155839 eV Total energy + Delta-G solvation = -3055.223031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.32226 -38.48193 -36.66951 -33.36272 -32.63583 -31.21246 -30.52652 -29.63326 -28.36795 -25.52865 -24.54679 -22.81309 -22.00362 -20.79436 -20.62221 -20.35719 -17.21499 -17.00551 -16.36089 -16.08420 -15.38838 -15.22722 -14.71048 -14.58423 -14.31315 -14.05464 -13.66632 -13.42325 -13.30060 -12.98811 -12.50681 -12.38469 -12.17784 -11.82802 -11.59231 -11.43877 -11.38006 -11.26101 -11.06187 -10.99169 -10.34137 -10.26667 -9.95935 -9.81407 -9.25554 -9.05550 -8.92991 -8.91747 -8.55496 -8.55266 -6.07479 -4.06896 1.14485 1.22485 3.31995 3.38799 3.45566 3.55086 3.81944 4.35690 4.44561 4.53318 4.66035 4.72197 4.82876 4.86740 4.92797 5.08745 5.13508 5.27102 5.31372 5.34384 5.45487 5.52912 5.64225 5.69650 5.81554 5.84074 5.88522 5.93011 6.06777 6.09012 6.21126 6.25509 6.27468 6.34318 6.36556 6.66659 6.71340 6.81828 6.84503 7.13968 7.38054 7.69407 7.93297 8.47621 8.94807 9.54075 11.05463 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019953 B = 0.004104 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.956608 B = 6820.264817 C = 7697.109376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.523 4.523 8 H 0.073 0.927 9 C -0.009 4.009 10 C 0.077 3.923 11 O -0.385 6.385 12 C 0.086 3.914 13 H 0.071 0.929 14 C -0.155 4.155 15 C 0.029 3.971 16 N -0.504 5.504 17 C 0.084 3.916 18 C -0.122 4.122 19 C -0.111 4.111 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.104 4.104 24 C 0.028 3.972 25 H 0.264 0.736 26 H 0.024 0.976 27 H 0.019 0.981 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.084 0.916 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.648 -8.503 -2.000 25.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.046 4.046 10 C 0.001 3.999 11 O -0.304 6.304 12 C 0.027 3.973 13 H 0.089 0.911 14 C -0.194 4.194 15 C -0.098 4.098 16 N -0.227 5.227 17 C -0.044 4.044 18 C -0.123 4.123 19 C -0.130 4.130 20 C -0.139 4.139 21 C -0.136 4.136 22 C -0.137 4.137 23 C -0.123 4.123 24 C -0.100 4.100 25 H 0.074 0.926 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.103 0.897 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 23.431 -8.723 -1.711 25.060 hybrid contribution 0.329 1.458 -0.570 1.600 sum 23.760 -7.264 -2.281 24.950 Atomic orbital electron populations 1.69903 1.06275 1.27059 1.50756 1.24949 0.94732 0.99167 0.94284 0.86759 0.80471 0.83364 0.78670 1.20183 1.21277 1.18786 1.20941 0.88804 0.94757 1.51639 0.90912 1.19532 0.96573 0.91144 0.97377 1.22673 0.77417 1.00712 0.99066 1.87910 1.22158 1.25528 1.94775 1.22802 0.93947 0.86202 0.94349 0.91130 1.22928 0.96804 1.00677 0.98949 1.22940 0.96196 1.00772 0.89912 1.65129 1.04913 1.37890 1.14761 1.21378 0.88596 0.92193 1.02268 1.20567 1.00123 0.97515 0.94131 1.21066 0.99507 0.97390 0.95050 1.21148 0.99957 0.93187 0.99615 1.21177 0.99933 0.98943 0.93576 1.21182 0.99284 0.97141 0.96045 1.21095 0.98752 0.92865 0.99564 1.23419 0.93787 0.93100 0.99674 0.92588 0.95789 0.96305 0.94100 0.93961 0.90438 0.90942 0.92782 0.90405 0.89898 0.89565 0.86205 0.86148 0.86136 0.85957 0.85970 0.89723 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 22.16 27.47 -169.99 -4.67 17.49 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.52 -15.22 9.66 -34.44 -0.33 -15.56 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.22 4.41 -27.89 -0.12 -0.34 16 10 C 0.08 1.65 5.75 37.15 0.21 1.87 16 11 O -0.38 -7.56 10.08 -35.23 -0.36 -7.91 16 12 C 0.09 1.35 3.51 -24.87 -0.09 1.26 16 13 H 0.07 1.08 7.88 -51.93 -0.41 0.67 16 14 C -0.16 -2.13 6.69 -25.37 -0.17 -2.30 16 15 C 0.03 0.34 6.46 -2.75 -0.02 0.32 16 16 N -0.50 -5.86 5.54 -231.89 -1.28 -7.14 16 17 C 0.08 0.80 5.69 -4.98 -0.03 0.77 16 18 C -0.12 -1.27 3.96 -104.63 -0.41 -1.68 16 19 C -0.11 -1.13 8.20 -39.59 -0.32 -1.45 16 20 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 21 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 22 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 23 C -0.10 -1.11 7.49 -39.58 -0.30 -1.40 16 24 C 0.03 0.37 5.78 -1.90 -0.01 0.36 16 25 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 26 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 27 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.04 0.88 8.11 -51.92 -0.42 0.46 16 30 H 0.08 1.15 8.07 -51.93 -0.42 0.74 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.58 4.84 -51.93 -0.25 0.33 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.68 8.03 -51.92 -0.42 0.27 16 35 H 0.09 0.75 8.09 -51.93 -0.42 0.33 16 36 H 0.12 1.03 7.15 -52.48 -0.38 0.65 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.07 1.04 4.85 -51.93 -0.25 0.79 16 LS Contribution 333.89 15.07 5.03 5.03 Total: -1.00 -31.69 333.89 -10.08 -41.78 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.70 Total: -1.03 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -2.88 Total: -21.03 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: -0.51 Total: -34.32 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.36 Total: -7.91 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.69 -10.08 -41.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205620868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.499 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds