Wall clock time and date at job start Mon Mar 30 2020 01:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99707 * 2 1 4 4 H 1.48493 * 109.47298 * 270.00246 * 3 2 1 5 5 H 1.48502 * 109.47252 * 30.00472 * 3 2 1 6 6 H 1.48502 * 109.46832 * 150.00150 * 3 2 1 7 7 C 1.37877 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99884 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99958 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47026 * 180.02562 * 9 7 2 11 11 O 1.42898 * 109.47077 * 180.02562 * 10 9 7 12 12 C 1.42907 * 113.99893 * 179.97438 * 11 10 9 13 13 H 1.08999 * 110.64659 * 328.30061 * 12 11 10 14 14 C 1.54598 * 110.72463 * 91.45250 * 12 11 10 15 15 C 1.53995 * 105.14317 * 140.31187 * 14 12 11 16 16 N 1.47911 * 107.05485 * 1.22533 * 15 14 12 17 17 C 1.46894 * 110.99801 * 214.15609 * 16 15 14 18 18 C 1.50698 * 109.47385 * 69.87203 * 17 16 15 19 19 C 1.38228 * 120.00195 * 270.21139 * 18 17 16 20 20 C 1.38238 * 120.00114 * 180.26174 * 19 18 17 21 21 C 1.38234 * 119.99675 * 359.50218 * 20 19 18 22 22 C 1.38235 * 120.00220 * 0.28720 * 21 20 19 23 23 C 1.38234 * 119.99720 * 89.99924 * 18 17 16 24 24 C 1.48534 * 105.81851 * 334.66954 * 16 15 14 25 25 H 0.96997 * 120.00461 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46586 * 60.00551 * 9 7 2 27 27 H 1.08996 * 109.47198 * 300.00218 * 9 7 2 28 28 H 1.09001 * 109.47560 * 60.00163 * 10 9 7 29 29 H 1.09009 * 109.47491 * 300.00250 * 10 9 7 30 30 H 1.09006 * 110.30636 * 21.39584 * 14 12 11 31 31 H 1.08998 * 110.30990 * 259.23127 * 14 12 11 32 32 H 1.08997 * 109.91839 * 241.87375 * 15 14 12 33 33 H 1.09000 * 110.08197 * 120.66494 * 15 14 12 34 34 H 1.09010 * 109.47013 * 309.87312 * 17 16 15 35 35 H 1.09000 * 109.46834 * 189.87633 * 17 16 15 36 36 H 1.08004 * 120.00270 * 0.03576 * 19 18 17 37 37 H 1.08002 * 120.00519 * 179.78838 * 20 19 18 38 38 H 1.07999 * 120.00009 * 180.25939 * 21 20 19 39 39 H 1.07996 * 120.00471 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.00294 * 0.02562 * 23 18 17 41 41 H 1.08999 * 110.66337 * 157.64114 * 24 16 15 42 42 H 1.08997 * 110.66425 * 280.76940 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 8 5.4506 -2.6364 -0.0022 12 6 6.0318 -3.9419 -0.0027 13 1 5.3954 -4.6462 0.5330 14 6 6.2879 -4.4262 -1.4484 15 6 7.6472 -5.1480 -1.3960 16 7 8.1112 -5.0978 0.0076 17 6 9.5741 -4.9821 0.0745 18 6 9.9924 -3.6157 -0.4039 19 6 10.2643 -3.4054 -1.7428 20 6 10.6532 -2.1533 -2.1808 21 6 10.7603 -1.1090 -1.2815 22 6 10.4842 -1.3182 0.0568 23 6 10.1000 -2.5715 0.4955 24 6 7.4551 -3.9085 0.6087 25 1 -0.4851 0.8400 0.0004 26 1 3.8752 -0.6804 0.8889 27 1 3.8746 -0.6799 -0.8911 28 1 3.6580 -3.1497 -0.8925 29 1 3.6586 -3.1510 0.8875 30 1 6.3369 -3.5762 -2.1290 31 1 5.5046 -5.1170 -1.7603 32 1 8.3628 -4.6394 -2.0420 33 1 7.5329 -6.1848 -1.7124 34 1 10.0282 -5.7438 -0.5594 35 1 9.9029 -5.1230 1.1042 36 1 10.1763 -4.2203 -2.4462 37 1 10.8690 -1.9898 -3.2263 38 1 11.0601 -0.1297 -1.6243 39 1 10.5683 -0.5024 0.7595 40 1 9.8847 -2.7350 1.5411 41 1 7.4099 -4.0015 1.6937 42 1 7.9761 -2.9953 0.3211 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205620868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:55 Heat of formation + Delta-G solvation = -36.974017 kcal Electronic energy + Delta-G solvation = -21112.232921 eV Core-core repulsion = 18056.155839 eV Total energy + Delta-G solvation = -3056.077082 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.19570 -39.55114 -37.94403 -35.34181 -33.79778 -32.40453 -31.93163 -30.59979 -29.49655 -26.74784 -26.17325 -23.59116 -22.94979 -22.52219 -21.76518 -21.39022 -19.16837 -17.91015 -17.71970 -17.10643 -16.38520 -16.27407 -16.14177 -16.08359 -15.72167 -15.15262 -14.91116 -14.46889 -14.34257 -14.25205 -14.03495 -13.72038 -13.21509 -13.18968 -12.89424 -12.68777 -12.50196 -12.34679 -12.14696 -11.99809 -11.93293 -11.86828 -11.74808 -11.54978 -11.37812 -10.82773 -10.43012 -9.81591 -9.68914 -9.44647 -8.34716 -6.40607 0.38858 0.47040 1.34356 1.35816 1.49198 2.33092 2.56124 2.85754 3.00308 3.25027 3.64698 3.71544 3.88531 3.94633 4.05725 4.11861 4.19981 4.28025 4.33395 4.37449 4.41469 4.50970 4.59244 4.70215 4.74063 4.78224 4.82716 4.86710 4.92396 5.04641 5.09141 5.10308 5.11949 5.18112 5.38170 5.51524 5.53240 5.56615 5.60721 5.80914 5.97029 6.09231 6.17848 6.39028 6.65356 7.24672 8.81430 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019953 B = 0.004104 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.956608 B = 6820.264817 C = 7697.109376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.949 3.051 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.253 1.253 7 C -0.537 4.537 8 H 0.039 0.961 9 C -0.005 4.005 10 C 0.090 3.910 11 O -0.398 6.398 12 C 0.073 3.927 13 H 0.072 0.928 14 C -0.154 4.154 15 C 0.034 3.966 16 N -0.504 5.504 17 C 0.085 3.915 18 C -0.129 4.129 19 C -0.120 4.120 20 C -0.132 4.132 21 C -0.130 4.130 22 C -0.134 4.134 23 C -0.118 4.118 24 C 0.035 3.965 25 H 0.270 0.730 26 H 0.022 0.978 27 H 0.019 0.981 28 H 0.041 0.959 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.089 0.911 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.781 -8.526 -2.368 27.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.772 3.228 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.176 1.176 7 C -0.574 4.574 8 H 0.057 0.943 9 C -0.043 4.043 10 C 0.014 3.986 11 O -0.317 6.317 12 C 0.015 3.985 13 H 0.090 0.910 14 C -0.192 4.192 15 C -0.094 4.094 16 N -0.227 5.227 17 C -0.043 4.043 18 C -0.131 4.131 19 C -0.139 4.139 20 C -0.149 4.149 21 C -0.149 4.149 22 C -0.152 4.152 23 C -0.136 4.136 24 C -0.093 4.093 25 H 0.079 0.921 26 H 0.041 0.959 27 H 0.038 0.962 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.108 0.892 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 25.585 -8.768 -2.080 27.125 hybrid contribution -0.336 1.383 -0.463 1.497 sum 25.249 -7.385 -2.542 26.429 Atomic orbital electron populations 1.70032 1.08091 1.28446 1.51857 1.25887 0.95606 1.03272 0.93706 0.85678 0.79380 0.78390 0.79366 1.19012 1.20291 1.17633 1.21207 0.90934 0.93725 1.51582 0.94262 1.19404 0.94060 0.93691 0.97126 1.22299 0.78849 0.98240 0.99190 1.87858 1.20609 1.28208 1.95010 1.23111 0.94889 0.84439 0.96078 0.91001 1.22899 0.98632 1.00498 0.97208 1.22959 0.94801 1.01562 0.90041 1.65168 1.06182 1.36593 1.14727 1.21472 0.87165 0.92295 1.03332 1.20694 1.00276 0.97774 0.94344 1.21327 0.99273 0.97990 0.95293 1.21454 0.99697 0.93198 1.00591 1.21467 0.99883 0.99875 0.93633 1.21438 0.99520 0.97600 0.96650 1.21292 0.99051 0.93196 1.00109 1.23320 0.92337 0.93641 0.99963 0.92138 0.95916 0.96215 0.94036 0.93859 0.91891 0.90346 0.92010 0.88603 0.88118 0.88655 0.84696 0.84453 0.84695 0.84965 0.85419 0.89235 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.39 13.96 21.45 0.30 -59.09 16 2 C 0.01 0.78 5.47 84.65 0.46 1.24 16 3 Si 0.95 45.26 27.47 68.60 1.88 47.15 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.25 -11.52 6.54 99.48 0.65 -10.87 16 7 C -0.54 -31.71 9.66 25.60 0.25 -31.47 16 8 H 0.04 2.50 7.99 -2.91 -0.02 2.48 16 9 C -0.01 -0.27 4.41 29.85 0.13 -0.13 16 10 C 0.09 3.87 5.75 71.98 0.41 4.28 16 11 O -0.40 -15.34 10.08 -148.98 -1.50 -16.84 16 12 C 0.07 2.21 3.51 31.80 0.11 2.32 16 13 H 0.07 2.14 7.88 -2.39 -0.02 2.12 16 14 C -0.15 -4.01 6.69 31.47 0.21 -3.80 16 15 C 0.03 0.69 6.46 86.44 0.56 1.25 16 16 N -0.50 -10.53 5.54 -887.55 -4.91 -15.44 16 17 C 0.08 1.40 5.69 85.56 0.49 1.89 16 18 C -0.13 -2.46 3.96 -19.87 -0.08 -2.54 16 19 C -0.12 -2.19 8.20 22.27 0.18 -2.01 16 20 C -0.13 -2.40 10.05 22.27 0.22 -2.17 16 21 C -0.13 -2.48 10.05 22.27 0.22 -2.25 16 22 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 23 C -0.12 -2.37 7.49 22.27 0.17 -2.20 16 24 C 0.04 0.89 5.78 86.65 0.50 1.40 16 25 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 26 H 0.02 1.13 7.20 -2.39 -0.02 1.12 16 27 H 0.02 0.97 7.57 -2.39 -0.02 0.96 16 28 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.04 1.82 8.11 -2.38 -0.02 1.80 16 30 H 0.06 1.82 8.07 -2.38 -0.02 1.80 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.06 1.17 4.84 -2.39 -0.01 1.16 16 33 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.10 1.33 8.03 -2.38 -0.02 1.31 16 35 H 0.10 1.42 8.09 -2.39 -0.02 1.40 16 36 H 0.14 1.95 7.15 -2.91 -0.02 1.93 16 37 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 39 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.13 2.30 8.06 -2.91 -0.02 2.27 16 41 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.06 1.74 4.85 -2.39 -0.01 1.73 16 Total: -1.00 -67.48 333.89 0.76 -66.72 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.92 Total: 14.15 kcal Atomic # 6 Polarization: -40.71 SS G_CDS: 4.07 Total: -36.64 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -4.61 Total: -74.53 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -1.50 Total: -16.84 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.15 kcal Total: -67.48 0.76 -66.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205620868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.744 kcal (2) G-P(sol) polarization free energy of solvation -67.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds