Wall clock time and date at job start Mon Mar 30 2020 01:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99810 * 2 1 4 4 H 1.48497 * 109.47341 * 270.00110 * 3 2 1 5 5 H 1.48500 * 109.47273 * 30.00730 * 3 2 1 6 6 H 1.48504 * 109.46658 * 150.00485 * 3 2 1 7 7 C 1.37877 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99456 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00609 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47412 * 179.97438 * 9 7 2 11 11 O 1.42904 * 109.47139 * 179.97438 * 10 9 7 12 12 C 1.42905 * 113.99993 * 179.97438 * 11 10 9 13 13 H 1.09001 * 110.63772 * 26.85843 * 12 11 10 14 14 C 1.54593 * 110.88042 * 263.59439 * 12 11 10 15 15 C 1.53988 * 105.13853 * 219.61383 * 14 12 11 16 16 N 1.48064 * 107.14543 * 358.91767 * 15 14 12 17 17 C 1.46902 * 111.16437 * 145.63064 * 16 15 14 18 18 C 1.50705 * 109.46549 * 52.60397 * 17 16 15 19 19 C 1.38229 * 120.00015 * 269.72050 * 18 17 16 20 20 C 1.38237 * 120.00071 * 179.81360 * 19 18 17 21 21 C 1.38243 * 119.99523 * 0.42334 * 20 19 18 22 22 C 1.38234 * 120.00080 * 359.81603 * 21 20 19 23 23 C 1.38227 * 119.99981 * 359.97438 * 22 21 20 24 24 C 1.48537 * 105.73449 * 25.07892 * 16 15 14 25 25 H 0.97001 * 120.00317 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46943 * 59.99138 * 9 7 2 27 27 H 1.09005 * 109.47003 * 300.00117 * 9 7 2 28 28 H 1.08998 * 109.47162 * 60.00256 * 10 9 7 29 29 H 1.08998 * 109.47237 * 299.99928 * 10 9 7 30 30 H 1.09005 * 110.30927 * 338.53167 * 14 12 11 31 31 H 1.08997 * 110.30746 * 100.69601 * 14 12 11 32 32 H 1.09006 * 109.91426 * 118.12915 * 15 14 12 33 33 H 1.08998 * 109.91818 * 239.21826 * 15 14 12 34 34 H 1.08995 * 109.46938 * 172.60380 * 17 16 15 35 35 H 1.08994 * 109.47047 * 292.60901 * 17 16 15 36 36 H 1.07998 * 120.00281 * 0.02562 * 19 18 17 37 37 H 1.08000 * 120.00761 * 180.21243 * 20 19 18 38 38 H 1.08003 * 119.99714 * 179.78627 * 21 20 19 39 39 H 1.07997 * 120.00087 * 179.97438 * 22 21 20 40 40 H 1.08007 * 119.99932 * 179.97438 * 23 22 21 41 41 H 1.09002 * 110.66696 * 202.50331 * 24 16 15 42 42 H 1.09001 * 110.66368 * 79.54170 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 8 5.4506 -2.6365 -0.0021 12 6 6.0319 -3.9420 -0.0015 13 1 5.3564 -4.6635 -0.4613 14 6 6.4043 -4.3786 1.4339 15 6 7.7548 -5.1054 1.2955 16 7 8.1073 -5.1013 -0.1426 17 6 9.5596 -4.9873 -0.3324 18 6 10.2568 -6.0500 0.4774 19 6 10.6445 -5.7851 1.7775 20 6 11.2806 -6.7612 2.5216 21 6 11.5369 -7.9992 1.9624 22 6 11.1536 -8.2624 0.6606 23 6 10.5137 -7.2878 -0.0819 24 6 7.4008 -3.9329 -0.7272 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8746 -0.6800 -0.8912 28 1 3.6579 -3.1505 -0.8907 29 1 3.6586 -3.1501 0.8892 30 1 6.5084 -3.5066 2.0796 31 1 5.6489 -5.0564 1.8312 32 1 8.5205 -4.5776 1.8641 33 1 7.6641 -6.1297 1.6571 34 1 9.7995 -5.1186 -1.3875 35 1 9.8928 -4.0030 -0.0036 36 1 10.4473 -4.8168 2.2132 37 1 11.5805 -6.5555 3.5385 38 1 12.0370 -8.7607 2.5426 39 1 11.3542 -9.2295 0.2237 40 1 10.2146 -7.4933 -1.0992 41 1 7.2677 -4.0617 -1.8014 42 1 7.9422 -3.0107 -0.5158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205620872.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:59 Heat of formation + Delta-G solvation = -21.051850 kcal Electronic energy + Delta-G solvation = -20391.751673 eV Core-core repulsion = 17336.365027 eV Total energy + Delta-G solvation = -3055.386645 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.01964 -38.73978 -36.71852 -33.41909 -32.72718 -31.18264 -30.55720 -29.97088 -28.14776 -25.56518 -24.55058 -22.89466 -21.89645 -21.13736 -20.52033 -20.38109 -17.22140 -16.92423 -16.36065 -16.20136 -15.55996 -15.34667 -14.64890 -14.50726 -14.32362 -13.98666 -13.68582 -13.64364 -13.34123 -12.82976 -12.71281 -12.47633 -12.34189 -12.13274 -11.63012 -11.50996 -11.26804 -11.13788 -11.08192 -11.02000 -10.41216 -10.27482 -9.98017 -9.81720 -9.26491 -9.16445 -9.08151 -8.95831 -8.56277 -8.54290 -6.08181 -4.07766 1.06069 1.15216 3.31546 3.38391 3.41586 3.44739 3.84524 4.31222 4.43756 4.47564 4.59015 4.67062 4.73759 4.83382 4.91074 4.98166 5.15129 5.24222 5.26196 5.27328 5.37095 5.41263 5.61147 5.62314 5.73982 5.78639 5.84663 5.87557 6.04416 6.06209 6.17803 6.19217 6.24593 6.25104 6.35997 6.63941 6.67757 6.73758 6.83754 7.11893 7.36381 7.67845 7.89950 8.46621 8.94013 9.53166 11.04678 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.047970 B = 0.002684 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.559550 B =10428.675389 C =10456.997050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.073 0.927 9 C -0.009 4.009 10 C 0.077 3.923 11 O -0.386 6.386 12 C 0.086 3.914 13 H 0.073 0.927 14 C -0.156 4.156 15 C 0.040 3.960 16 N -0.510 5.510 17 C 0.084 3.916 18 C -0.080 4.080 19 C -0.113 4.113 20 C -0.122 4.122 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.099 4.099 24 C 0.037 3.963 25 H 0.264 0.736 26 H 0.023 0.977 27 H 0.020 0.980 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.088 0.912 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.222 -14.745 2.260 28.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.047 4.047 10 C 0.001 3.999 11 O -0.305 6.305 12 C 0.027 3.973 13 H 0.091 0.909 14 C -0.194 4.194 15 C -0.087 4.087 16 N -0.235 5.235 17 C -0.043 4.043 18 C -0.080 4.080 19 C -0.132 4.132 20 C -0.140 4.140 21 C -0.140 4.140 22 C -0.140 4.140 23 C -0.117 4.117 24 C -0.090 4.090 25 H 0.074 0.926 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.106 0.894 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 23.999 -14.922 2.003 28.331 hybrid contribution 0.419 1.337 0.478 1.481 sum 24.418 -13.585 2.481 28.053 Atomic orbital electron populations 1.69904 1.06279 1.27070 1.50697 1.24962 0.94753 0.99211 0.94295 0.86745 0.80428 0.83316 0.78675 1.20151 1.21310 1.18809 1.20932 0.88786 0.94758 1.51681 0.90913 1.19538 0.96603 0.91115 0.97407 1.22696 0.77268 1.00766 0.99142 1.87900 1.22313 1.25505 1.94749 1.22798 0.94055 0.86393 0.94052 0.90854 1.22943 0.96884 1.00796 0.98783 1.22856 0.96127 1.00714 0.89019 1.64882 1.06255 1.39762 1.12559 1.21240 0.87544 0.95564 0.99960 1.19775 0.98383 0.95377 0.94498 1.21126 0.98627 0.99499 0.93917 1.21124 0.99318 0.93693 0.99824 1.21158 1.00311 0.97014 0.95566 1.21160 0.98998 0.99250 0.94638 1.21052 0.97849 0.92638 1.00183 1.23246 0.93983 0.91994 0.99798 0.92581 0.95834 0.96200 0.93906 0.94000 0.90316 0.90855 0.93454 0.90478 0.89561 0.93550 0.86276 0.86149 0.86257 0.86110 0.85845 0.89375 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.40 6.54 56.52 0.37 -6.04 16 7 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 8 H 0.07 2.22 7.99 -52.48 -0.42 1.81 16 9 C -0.01 -0.23 4.41 -27.89 -0.12 -0.35 16 10 C 0.08 1.62 5.71 37.15 0.21 1.83 16 11 O -0.39 -7.35 10.09 -35.23 -0.36 -7.70 16 12 C 0.09 1.30 3.55 -24.87 -0.09 1.21 16 13 H 0.07 1.09 7.82 -51.93 -0.41 0.69 16 14 C -0.16 -2.07 6.70 -25.38 -0.17 -2.24 16 15 C 0.04 0.47 5.39 -2.67 -0.01 0.45 16 16 N -0.51 -5.93 5.39 -231.75 -1.25 -7.18 16 17 C 0.08 0.83 5.19 -4.97 -0.03 0.80 16 18 C -0.08 -0.77 4.72 -104.62 -0.49 -1.26 16 19 C -0.11 -1.03 8.32 -39.59 -0.33 -1.36 16 20 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 21 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 22 C -0.12 -0.99 10.05 -39.59 -0.40 -1.39 16 23 C -0.10 -0.89 9.70 -39.59 -0.38 -1.27 16 24 C 0.04 0.48 6.27 -1.90 -0.01 0.47 16 25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 27 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 28 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.10 8.08 -51.93 -0.42 0.69 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.51 5.84 -51.93 -0.30 0.21 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 35 H 0.05 0.45 7.83 -51.93 -0.41 0.04 16 36 H 0.12 1.00 7.09 -52.49 -0.37 0.62 16 37 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 39 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 40 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.06 0.75 7.85 -51.93 -0.41 0.34 16 LS Contribution 339.49 15.07 5.12 5.12 Total: -1.00 -31.22 339.49 -10.33 -41.55 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -6.89 Total: -2.70 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -3.05 Total: -19.35 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: -0.48 Total: -34.24 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.36 Total: -7.70 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.22 -10.33 -41.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205620872.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.497 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds