Wall clock time and date at job start Mon Mar 30 2020 01:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99810 * 2 1 4 4 H 1.48497 * 109.47341 * 270.00110 * 3 2 1 5 5 H 1.48500 * 109.47273 * 30.00730 * 3 2 1 6 6 H 1.48504 * 109.46658 * 150.00485 * 3 2 1 7 7 C 1.37877 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99456 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00609 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47412 * 179.97438 * 9 7 2 11 11 O 1.42904 * 109.47139 * 179.97438 * 10 9 7 12 12 C 1.42905 * 113.99993 * 179.97438 * 11 10 9 13 13 H 1.09001 * 110.63772 * 26.85843 * 12 11 10 14 14 C 1.54593 * 110.88042 * 263.59439 * 12 11 10 15 15 C 1.53988 * 105.13853 * 219.61383 * 14 12 11 16 16 N 1.48064 * 107.14543 * 358.91767 * 15 14 12 17 17 C 1.46902 * 111.16437 * 145.63064 * 16 15 14 18 18 C 1.50705 * 109.46549 * 52.60397 * 17 16 15 19 19 C 1.38229 * 120.00015 * 269.72050 * 18 17 16 20 20 C 1.38237 * 120.00071 * 179.81360 * 19 18 17 21 21 C 1.38243 * 119.99523 * 0.42334 * 20 19 18 22 22 C 1.38234 * 120.00080 * 359.81603 * 21 20 19 23 23 C 1.38227 * 119.99981 * 359.97438 * 22 21 20 24 24 C 1.48537 * 105.73449 * 25.07892 * 16 15 14 25 25 H 0.97001 * 120.00317 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46943 * 59.99138 * 9 7 2 27 27 H 1.09005 * 109.47003 * 300.00117 * 9 7 2 28 28 H 1.08998 * 109.47162 * 60.00256 * 10 9 7 29 29 H 1.08998 * 109.47237 * 299.99928 * 10 9 7 30 30 H 1.09005 * 110.30927 * 338.53167 * 14 12 11 31 31 H 1.08997 * 110.30746 * 100.69601 * 14 12 11 32 32 H 1.09006 * 109.91426 * 118.12915 * 15 14 12 33 33 H 1.08998 * 109.91818 * 239.21826 * 15 14 12 34 34 H 1.08995 * 109.46938 * 172.60380 * 17 16 15 35 35 H 1.08994 * 109.47047 * 292.60901 * 17 16 15 36 36 H 1.07998 * 120.00281 * 0.02562 * 19 18 17 37 37 H 1.08000 * 120.00761 * 180.21243 * 20 19 18 38 38 H 1.08003 * 119.99714 * 179.78627 * 21 20 19 39 39 H 1.07997 * 120.00087 * 179.97438 * 22 21 20 40 40 H 1.08007 * 119.99932 * 179.97438 * 23 22 21 41 41 H 1.09002 * 110.66696 * 202.50331 * 24 16 15 42 42 H 1.09001 * 110.66368 * 79.54170 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 8 5.4506 -2.6365 -0.0021 12 6 6.0319 -3.9420 -0.0015 13 1 5.3564 -4.6635 -0.4613 14 6 6.4043 -4.3786 1.4339 15 6 7.7548 -5.1054 1.2955 16 7 8.1073 -5.1013 -0.1426 17 6 9.5596 -4.9873 -0.3324 18 6 10.2568 -6.0500 0.4774 19 6 10.6445 -5.7851 1.7775 20 6 11.2806 -6.7612 2.5216 21 6 11.5369 -7.9992 1.9624 22 6 11.1536 -8.2624 0.6606 23 6 10.5137 -7.2878 -0.0819 24 6 7.4008 -3.9329 -0.7272 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8746 -0.6800 -0.8912 28 1 3.6579 -3.1505 -0.8907 29 1 3.6586 -3.1501 0.8892 30 1 6.5084 -3.5066 2.0796 31 1 5.6489 -5.0564 1.8312 32 1 8.5205 -4.5776 1.8641 33 1 7.6641 -6.1297 1.6571 34 1 9.7995 -5.1186 -1.3875 35 1 9.8928 -4.0030 -0.0036 36 1 10.4473 -4.8168 2.2132 37 1 11.5805 -6.5555 3.5385 38 1 12.0370 -8.7607 2.5426 39 1 11.3542 -9.2295 0.2237 40 1 10.2146 -7.4933 -1.0992 41 1 7.2677 -4.0617 -1.8014 42 1 7.9422 -3.0107 -0.5158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205620872.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:58 Heat of formation + Delta-G solvation = -39.954311 kcal Electronic energy + Delta-G solvation = -20392.571345 eV Core-core repulsion = 17336.365027 eV Total energy + Delta-G solvation = -3056.206318 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.84602 -39.70192 -37.99910 -35.33325 -33.85915 -32.37411 -31.78808 -30.93061 -29.26557 -26.70501 -26.18566 -23.53384 -22.79141 -22.51001 -22.04489 -21.29817 -19.15023 -17.81964 -17.57917 -17.18769 -16.40336 -16.32235 -16.24539 -16.07330 -15.49148 -15.18536 -14.80879 -14.55472 -14.27264 -14.20399 -13.97953 -13.63217 -13.44667 -13.19128 -13.05999 -12.77429 -12.55787 -12.42255 -12.07339 -11.96253 -11.82060 -11.75270 -11.73552 -11.55359 -11.38334 -10.81918 -10.42522 -9.78378 -9.76698 -9.40604 -8.33691 -6.39628 0.42397 0.53219 1.35938 1.37309 1.50562 2.34176 2.51113 2.91150 3.01327 3.26600 3.61102 3.64069 3.92842 3.95826 4.01816 4.15701 4.19181 4.32093 4.36295 4.38741 4.39580 4.48589 4.61524 4.65480 4.69407 4.77238 4.81030 4.84863 4.88283 5.02992 5.05851 5.13001 5.17097 5.19959 5.39840 5.53927 5.57057 5.64975 5.69318 5.76627 5.95086 6.14226 6.18598 6.37816 6.66565 7.25523 8.82356 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.047970 B = 0.002684 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.559550 B =10428.675389 C =10456.997050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.010 3.990 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.251 1.251 7 C -0.536 4.536 8 H 0.038 0.962 9 C -0.006 4.006 10 C 0.090 3.910 11 O -0.396 6.396 12 C 0.075 3.925 13 H 0.074 0.926 14 C -0.154 4.154 15 C 0.049 3.951 16 N -0.512 5.512 17 C 0.086 3.914 18 C -0.093 4.093 19 C -0.124 4.124 20 C -0.129 4.129 21 C -0.127 4.127 22 C -0.129 4.129 23 C -0.111 4.111 24 C 0.044 3.956 25 H 0.269 0.731 26 H 0.022 0.978 27 H 0.023 0.977 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.122 0.878 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.129 0.871 41 H 0.096 0.904 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.574 -14.919 2.459 30.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.188 4.188 3 Si 0.774 3.226 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.175 1.175 7 C -0.574 4.574 8 H 0.057 0.943 9 C -0.044 4.044 10 C 0.014 3.986 11 O -0.315 6.315 12 C 0.017 3.983 13 H 0.092 0.908 14 C -0.192 4.192 15 C -0.079 4.079 16 N -0.238 5.238 17 C -0.041 4.041 18 C -0.094 4.094 19 C -0.143 4.143 20 C -0.147 4.147 21 C -0.145 4.145 22 C -0.147 4.147 23 C -0.129 4.129 24 C -0.083 4.083 25 H 0.078 0.922 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.066 0.934 36 H 0.140 0.860 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.147 0.853 41 H 0.114 0.886 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 26.372 -15.117 2.201 30.477 hybrid contribution -0.300 1.259 0.430 1.364 sum 26.072 -13.858 2.632 29.643 Atomic orbital electron populations 1.70038 1.08133 1.28428 1.51904 1.25927 0.95647 1.03411 0.93768 0.85642 0.79341 0.78207 0.79383 1.18938 1.20506 1.17512 1.21209 0.91005 0.93667 1.51495 0.94339 1.19416 0.93986 0.93702 0.97278 1.22323 0.78752 0.98280 0.99264 1.87847 1.20682 1.28039 1.94976 1.23071 0.94926 0.84635 0.95692 0.90801 1.22911 0.98085 1.00731 0.97462 1.22782 0.95205 1.00638 0.89277 1.64902 1.07496 1.38953 1.12403 1.21265 0.86261 0.95888 1.00685 1.19807 0.99132 0.95603 0.94828 1.21258 0.99067 0.99990 0.93983 1.21395 0.98985 0.93713 1.00618 1.21481 0.99901 0.97389 0.95715 1.21446 0.98499 0.99879 0.94833 1.21235 0.98199 0.92758 1.00725 1.23174 0.92662 0.92449 1.00054 0.92183 0.95932 0.95877 0.93759 0.94017 0.91110 0.90507 0.92618 0.90237 0.88695 0.93436 0.86011 0.84541 0.84207 0.84291 0.85263 0.88609 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 2 C 0.01 0.60 5.47 84.65 0.46 1.06 16 3 Si 0.95 44.93 27.47 68.60 1.88 46.81 16 4 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 7 C -0.54 -31.40 9.66 25.60 0.25 -31.16 16 8 H 0.04 2.44 7.99 -2.91 -0.02 2.42 16 9 C -0.01 -0.31 4.41 29.84 0.13 -0.18 16 10 C 0.09 3.76 5.71 71.98 0.41 4.17 16 11 O -0.40 -14.73 10.09 -148.98 -1.50 -16.24 16 12 C 0.08 2.19 3.55 31.80 0.11 2.31 16 13 H 0.07 2.14 7.82 -2.39 -0.02 2.12 16 14 C -0.15 -3.93 6.70 31.47 0.21 -3.72 16 15 C 0.05 1.05 5.39 86.41 0.47 1.52 16 16 N -0.51 -11.14 5.39 -887.12 -4.78 -15.92 16 17 C 0.09 1.56 5.19 85.56 0.44 2.00 16 18 C -0.09 -1.65 4.72 -19.87 -0.09 -1.74 16 19 C -0.12 -2.07 8.32 22.27 0.19 -1.89 16 20 C -0.13 -1.88 10.05 22.27 0.22 -1.65 16 21 C -0.13 -1.71 10.05 22.27 0.22 -1.48 16 22 C -0.13 -1.82 10.05 22.27 0.22 -1.60 16 23 C -0.11 -1.81 9.70 22.27 0.22 -1.60 16 24 C 0.04 1.08 6.27 86.65 0.54 1.62 16 25 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 26 H 0.02 1.11 7.20 -2.39 -0.02 1.09 16 27 H 0.02 1.11 7.57 -2.38 -0.02 1.10 16 28 H 0.04 1.82 8.11 -2.39 -0.02 1.80 16 29 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.07 1.93 8.08 -2.38 -0.02 1.91 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 32 H 0.06 1.12 5.84 -2.38 -0.01 1.10 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.09 1.53 8.09 -2.39 -0.02 1.51 16 35 H 0.05 0.85 7.83 -2.39 -0.02 0.83 16 36 H 0.12 1.87 7.09 -2.91 -0.02 1.85 16 37 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 38 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 39 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 40 H 0.13 1.86 8.06 -2.91 -0.02 1.84 16 41 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.05 1.34 7.85 -2.39 -0.02 1.32 16 Total: -1.00 -66.30 339.49 0.82 -65.48 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.92 Total: 11.20 kcal Atomic # 6 Polarization: -36.35 SS G_CDS: 4.01 Total: -32.34 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -4.48 Total: -74.91 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -1.50 Total: -16.24 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.88 Total: 46.81 kcal Total: -66.30 0.82 -65.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205620872.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.522 kcal (2) G-P(sol) polarization free energy of solvation -66.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds