Wall clock time and date at job start Mon Mar 30 2020 01:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99533 * 2 1 4 4 H 1.48505 * 109.47069 * 239.99598 * 3 2 1 5 5 H 1.48493 * 109.47319 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47208 * 120.00351 * 3 2 1 7 7 C 1.37871 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00271 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47066 * 179.97438 * 9 7 2 11 11 O 1.42901 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.42894 * 114.00195 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.50581 * 329.92306 * 12 11 10 14 14 C 1.53127 * 109.49889 * 89.99955 * 12 11 10 15 15 C 1.53123 * 109.15530 * 177.63791 * 14 12 11 16 16 C 1.53033 * 109.27966 * 302.34245 * 15 14 12 17 17 N 1.46846 * 109.52504 * 59.18032 * 16 15 14 18 18 C 1.39675 * 111.00409 * 174.15941 * 17 16 15 19 19 C 1.38914 * 120.07282 * 56.05026 * 18 17 16 20 20 C 1.38100 * 119.92419 * 180.02562 * 19 18 17 21 21 C 1.38288 * 120.07489 * 359.97438 * 20 19 18 22 22 C 1.38283 * 120.14964 * 0.27921 * 21 20 19 23 23 C 1.38104 * 120.07445 * 359.44998 * 22 21 20 24 24 C 1.46850 * 111.19823 * 298.26285 * 17 16 15 25 25 H 0.97000 * 120.00230 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47004 * 60.00380 * 9 7 2 27 27 H 1.08991 * 109.47345 * 299.99953 * 9 7 2 28 28 H 1.08994 * 109.47283 * 60.00150 * 10 9 7 29 29 H 1.09004 * 109.46842 * 299.99732 * 10 9 7 30 30 H 1.08996 * 109.52282 * 57.73615 * 14 12 11 31 31 H 1.08999 * 109.52360 * 297.53671 * 14 12 11 32 32 H 1.09002 * 109.50064 * 182.40663 * 15 14 12 33 33 H 1.08994 * 109.50810 * 62.29061 * 15 14 12 34 34 H 1.09003 * 109.46548 * 299.16922 * 16 15 14 35 35 H 1.09000 * 109.46794 * 179.20198 * 16 15 14 36 36 H 1.07999 * 120.03471 * 359.97438 * 19 18 17 37 37 H 1.08001 * 119.95830 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.92149 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.96059 * 179.69879 * 22 21 20 40 40 H 1.07999 * 120.04053 * 180.27967 * 23 22 21 41 41 H 1.09002 * 109.45982 * 181.75456 * 24 17 16 42 42 H 1.08993 * 109.45713 * 301.72008 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 8 1.5310 -4.8996 -0.0001 12 6 2.3710 -6.0556 -0.0007 13 1 3.3041 -5.8272 -0.5155 14 6 2.6715 -6.4699 1.4425 15 6 3.5226 -7.7427 1.4331 16 6 2.7778 -8.8430 0.6737 17 7 2.5144 -8.3986 -0.7009 18 6 1.9531 -9.4275 -1.4607 19 6 0.7864 -10.0501 -1.0354 20 6 0.2344 -11.0674 -1.7888 21 6 0.8415 -11.4660 -2.9657 22 6 2.0058 -10.8519 -3.3892 23 6 2.5601 -9.8301 -2.6435 24 6 1.6595 -7.2048 -0.7184 25 1 -0.4850 0.8400 -0.0004 26 1 0.6249 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8902 28 1 2.8721 -3.6043 0.8905 29 1 2.8721 -3.6042 -0.8895 30 1 1.7364 -6.6609 1.9689 31 1 3.2168 -5.6708 1.9448 32 1 3.7041 -8.0667 2.4579 33 1 4.4739 -7.5408 0.9409 34 1 1.8328 -9.0541 1.1744 35 1 3.3872 -9.7464 0.6529 36 1 0.3121 -9.7395 -0.1162 37 1 -0.6724 -11.5521 -1.4585 38 1 0.4079 -12.2621 -3.5527 39 1 2.4800 -11.1689 -4.3063 40 1 3.4670 -9.3478 -2.9772 41 1 1.4568 -6.9184 -1.7504 42 1 0.7199 -7.4236 -0.2112 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205631179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:50 Heat of formation + Delta-G solvation = -27.747434 kcal Electronic energy + Delta-G solvation = -20731.038246 eV Core-core repulsion = 17675.361259 eV Total energy + Delta-G solvation = -3055.676988 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.34703 -38.41317 -36.63280 -33.52129 -32.97868 -31.10527 -30.64017 -29.37141 -28.80861 -24.81999 -24.32635 -22.90928 -22.55458 -21.46890 -20.85918 -19.63094 -17.67514 -16.62128 -16.12784 -15.46894 -15.37014 -15.05038 -14.87495 -14.84186 -14.47201 -13.89908 -13.69013 -13.39848 -13.32107 -12.95054 -12.70806 -12.49563 -12.17411 -11.72420 -11.42774 -11.32791 -11.27216 -10.97784 -10.87312 -10.82139 -10.52242 -10.27560 -10.13417 -9.47419 -9.20337 -9.11984 -8.91670 -8.80627 -8.57587 -8.34518 -6.02286 -4.06014 1.10251 1.22432 3.32810 3.36852 3.38803 3.48332 3.59405 4.35315 4.55547 4.70769 4.77831 4.82457 4.89912 4.92509 4.96006 5.24088 5.27744 5.33195 5.33653 5.37683 5.45533 5.50799 5.67802 5.75094 5.81175 5.86407 5.94913 5.98267 6.15464 6.19729 6.24861 6.32737 6.33737 6.39462 6.43451 6.65814 6.79929 6.90434 7.29566 7.56672 7.80115 7.84515 8.12789 8.36992 9.00432 9.57627 11.09368 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029480 B = 0.003072 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.565477 B = 9112.598953 C = 9524.329195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.026 3.974 10 C 0.071 3.929 11 O -0.386 6.386 12 C 0.093 3.907 13 H 0.064 0.936 14 C -0.144 4.144 15 C -0.114 4.114 16 C 0.059 3.941 17 N -0.502 5.502 18 C 0.095 3.905 19 C -0.148 4.148 20 C -0.112 4.112 21 C -0.127 4.127 22 C -0.116 4.116 23 C -0.096 4.096 24 C 0.067 3.933 25 H 0.262 0.738 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.082 0.918 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.635 -23.691 -2.046 24.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.004 4.004 11 O -0.305 6.305 12 C 0.034 3.966 13 H 0.082 0.918 14 C -0.182 4.182 15 C -0.151 4.151 16 C -0.068 4.068 17 N -0.225 5.225 18 C 0.001 3.999 19 C -0.168 4.168 20 C -0.131 4.131 21 C -0.145 4.145 22 C -0.134 4.134 23 C -0.115 4.115 24 C -0.059 4.059 25 H 0.072 0.928 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.101 0.899 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.726 -23.401 -2.232 23.978 hybrid contribution -0.096 0.767 0.420 0.879 sum 4.630 -22.634 -1.813 23.174 Atomic orbital electron populations 1.69970 1.06081 1.26872 1.50106 1.24991 0.94875 0.99282 0.95122 0.86588 0.79517 0.82821 0.78662 1.20143 1.21187 1.20171 1.21019 0.92975 0.90582 1.51677 0.92598 1.19064 0.94244 0.89452 0.98387 1.22919 0.96317 0.83009 0.98199 1.87916 1.34039 1.13696 1.94851 1.21834 0.93911 0.86494 0.94348 0.91753 1.22122 1.00455 0.97554 0.98094 1.21550 0.99318 0.94562 0.99715 1.22183 0.99406 0.98169 0.87009 1.59451 1.46565 1.04010 1.12490 1.18822 0.92933 0.93522 0.94586 1.21718 0.96528 0.97817 1.00773 1.21028 0.99794 0.97144 0.95099 1.21167 0.96206 1.00350 0.96745 1.21116 0.96164 0.96375 0.99776 1.21088 1.00075 0.96607 0.93692 1.22081 0.93804 0.88414 1.01645 0.92794 0.95784 0.95802 0.94693 0.94625 0.91464 0.91197 0.91090 0.90935 0.94325 0.90616 0.86281 0.86183 0.86158 0.85808 0.85297 0.89926 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.70 5.34 -27.88 -0.15 0.55 16 10 C 0.07 1.58 5.69 37.16 0.21 1.80 16 11 O -0.39 -7.94 9.99 -35.23 -0.35 -8.29 16 12 C 0.09 1.49 2.77 -26.65 -0.07 1.41 16 13 H 0.06 1.03 7.79 -51.93 -0.40 0.63 16 14 C -0.14 -1.99 5.62 -26.60 -0.15 -2.14 16 15 C -0.11 -1.24 6.09 -26.65 -0.16 -1.40 16 16 C 0.06 0.64 5.06 -3.84 -0.02 0.62 16 17 N -0.50 -6.22 4.62 -171.15 -0.79 -7.01 16 18 C 0.10 1.11 4.68 -83.79 -0.39 0.72 16 19 C -0.15 -1.61 8.74 -39.38 -0.34 -1.95 16 20 C -0.11 -1.05 10.04 -39.61 -0.40 -1.45 16 21 C -0.13 -1.10 10.04 -39.55 -0.40 -1.50 16 22 C -0.12 -1.04 10.04 -39.61 -0.40 -1.44 16 23 C -0.10 -1.02 9.97 -39.38 -0.39 -1.41 16 24 C 0.07 0.96 4.87 -3.84 -0.02 0.94 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.03 0.74 7.94 -51.93 -0.41 0.33 16 29 H 0.04 0.77 8.09 -51.93 -0.42 0.35 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.00 7.94 -51.93 -0.41 0.59 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.41 7.15 -51.93 -0.37 0.04 16 35 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 36 H 0.12 1.24 7.13 -52.49 -0.37 0.87 16 37 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.08 1.25 8.11 -51.93 -0.42 0.83 16 42 H 0.05 0.67 7.79 -51.93 -0.40 0.26 16 LS Contribution 341.30 15.07 5.14 5.14 Total: -1.00 -31.03 341.30 -10.36 -41.39 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.99 Total: -2.46 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -3.09 Total: -19.03 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: -0.05 Total: -33.47 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -0.35 Total: -8.29 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.03 -10.36 -41.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205631179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.647 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds