Wall clock time and date at job start Mon Mar 30 2020 01:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00368 * 2 1 4 4 H 1.48500 * 109.47143 * 269.99439 * 3 2 1 5 5 H 1.48498 * 109.47241 * 29.99360 * 3 2 1 6 6 H 1.48496 * 109.47523 * 149.99644 * 3 2 1 7 7 C 1.37881 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00413 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99708 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46904 * 179.97438 * 9 7 2 11 11 O 1.42906 * 109.46779 * 179.97438 * 10 9 7 12 12 C 1.42898 * 113.99730 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.53801 * 30.09922 * 12 11 10 14 14 C 1.53124 * 109.50233 * 270.00313 * 12 11 10 15 15 C 1.53126 * 109.15878 * 182.40634 * 14 12 11 16 16 C 1.53037 * 109.27801 * 57.65645 * 15 14 12 17 17 N 1.46854 * 109.51886 * 300.81620 * 16 15 14 18 18 C 1.39677 * 110.99764 * 185.84178 * 17 16 15 19 19 C 1.38911 * 120.07456 * 235.77329 * 18 17 16 20 20 C 1.38109 * 119.92070 * 179.76958 * 19 18 17 21 21 C 1.38279 * 120.07767 * 0.50649 * 20 19 18 22 22 C 1.38288 * 120.14878 * 359.74450 * 21 20 19 23 23 C 1.38102 * 120.07757 * 0.02562 * 22 21 20 24 24 C 1.46844 * 111.19703 * 61.74789 * 17 16 15 25 25 H 0.97007 * 119.99590 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47260 * 59.99171 * 9 7 2 27 27 H 1.09005 * 109.46936 * 299.99605 * 9 7 2 28 28 H 1.09006 * 109.47436 * 59.99973 * 10 9 7 29 29 H 1.09000 * 109.47279 * 299.99236 * 10 9 7 30 30 H 1.08998 * 109.52745 * 62.49962 * 14 12 11 31 31 H 1.08999 * 109.52030 * 302.30418 * 14 12 11 32 32 H 1.09000 * 109.49775 * 177.59563 * 15 14 12 33 33 H 1.08992 * 109.50023 * 297.71261 * 15 14 12 34 34 H 1.08994 * 109.46593 * 60.83220 * 16 15 14 35 35 H 1.09004 * 109.45972 * 180.81661 * 16 15 14 36 36 H 1.07996 * 120.03433 * 0.02562 * 19 18 17 37 37 H 1.08003 * 119.95657 * 180.24909 * 20 19 18 38 38 H 1.07997 * 119.92739 * 179.76473 * 21 20 19 39 39 H 1.08006 * 119.96179 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.04055 * 180.02562 * 23 22 21 41 41 H 1.09002 * 109.46133 * 58.27161 * 24 17 16 42 42 H 1.09002 * 109.46165 * 178.24800 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5305 -4.8996 0.0011 12 6 2.3704 -6.0557 0.0006 13 1 3.3041 -5.8283 0.5151 14 6 2.6699 -6.4694 -1.4430 15 6 3.5201 -7.7429 -1.4348 16 6 2.7748 -8.8431 -0.6757 17 7 2.5126 -8.3992 0.6994 18 6 1.9509 -9.4281 1.4589 19 6 0.7368 -9.2333 2.1051 20 6 0.1820 -10.2544 2.8514 21 6 0.8387 -11.4660 2.9644 22 6 2.0501 -11.6615 2.3266 23 6 2.6083 -10.6464 1.5749 24 6 1.6586 -7.2048 0.7181 25 1 -0.4850 0.8401 -0.0004 26 1 0.6245 -2.5570 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 2.8719 -3.6044 0.8905 29 1 2.8717 -3.6045 -0.8895 30 1 3.2155 -5.6705 -1.9452 31 1 1.7343 -6.6594 -1.9689 32 1 3.7008 -8.0663 -2.4599 33 1 4.4717 -7.5419 -0.9429 34 1 1.8295 -9.0531 -1.1760 35 1 3.3838 -9.7469 -0.6555 36 1 0.2254 -8.2859 2.0206 37 1 -0.7640 -10.1049 3.3507 38 1 0.4045 -12.2616 3.5517 39 1 2.5603 -12.6093 2.4166 40 1 3.5542 -10.7999 1.0768 41 1 0.7184 -7.4226 0.2112 42 1 1.4568 -6.9187 1.7504 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205631181.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:54 Heat of formation + Delta-G solvation = -26.224425 kcal Electronic energy + Delta-G solvation = -20760.169191 eV Core-core repulsion = 17704.558246 eV Total energy + Delta-G solvation = -3055.610945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.50101 -38.38901 -36.66943 -33.58599 -33.05458 -31.48347 -30.44259 -29.26248 -28.86464 -24.89225 -24.53642 -23.50761 -21.71029 -21.41087 -20.89274 -19.76805 -17.90870 -16.63421 -15.96132 -15.70007 -15.32086 -15.13676 -14.82698 -14.67116 -14.48275 -14.08719 -13.72910 -13.62099 -13.11805 -12.97943 -12.84802 -12.51896 -12.18651 -11.63922 -11.50453 -11.29973 -11.09260 -11.05354 -10.88532 -10.84073 -10.55541 -10.38869 -10.17459 -9.77945 -9.48645 -9.21087 -9.07659 -8.87279 -8.36527 -7.95435 -6.04056 -4.07672 1.24813 1.26746 3.30378 3.34839 3.37048 3.40412 3.69615 4.32293 4.50488 4.66217 4.71268 4.81840 4.85709 4.91646 5.01109 5.21218 5.24778 5.28442 5.32103 5.37111 5.42675 5.46819 5.60451 5.69076 5.73747 5.82388 5.89262 5.94327 6.09070 6.16980 6.21784 6.27750 6.35148 6.37138 6.42184 6.64644 6.85660 6.88496 7.17764 7.53781 7.77737 7.81911 8.09583 8.34966 8.98891 9.56101 11.07613 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030890 B = 0.003097 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.233300 B = 9037.955015 C = 9640.485466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.026 3.974 10 C 0.071 3.929 11 O -0.385 6.385 12 C 0.092 3.908 13 H 0.065 0.935 14 C -0.145 4.145 15 C -0.116 4.116 16 C 0.058 3.942 17 N -0.487 5.487 18 C 0.118 3.882 19 C -0.171 4.171 20 C -0.093 4.093 21 C -0.152 4.152 22 C -0.098 4.098 23 C -0.144 4.144 24 C 0.056 3.944 25 H 0.262 0.738 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.054 0.946 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.506 -23.353 1.341 23.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.005 4.005 11 O -0.304 6.304 12 C 0.033 3.967 13 H 0.083 0.917 14 C -0.183 4.183 15 C -0.154 4.154 16 C -0.067 4.067 17 N -0.203 5.203 18 C 0.020 3.980 19 C -0.192 4.192 20 C -0.112 4.112 21 C -0.171 4.171 22 C -0.117 4.117 23 C -0.164 4.164 24 C -0.071 4.071 25 H 0.072 0.928 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.148 0.852 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.072 0.928 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.632 -23.023 1.480 23.531 hybrid contribution 0.064 0.848 -0.257 0.889 sum 4.696 -22.175 1.224 22.700 Atomic orbital electron populations 1.69984 1.06081 1.26771 1.50158 1.24996 0.94880 0.99306 0.95113 0.86525 0.79778 0.83144 0.78151 1.20574 1.21107 1.19808 1.21051 0.93007 0.90554 1.51598 0.92552 1.19069 0.94239 0.89445 0.98411 1.22933 0.96342 0.82949 0.98244 1.87917 1.33961 1.13670 1.94850 1.21837 0.93920 0.86563 0.94379 0.91735 1.22137 1.00570 0.97547 0.98079 1.21589 0.99318 0.94561 0.99923 1.22273 0.99971 0.98435 0.86026 1.58877 1.44784 1.04323 1.12338 1.18980 0.91786 0.90786 0.96440 1.21457 0.95025 1.00708 1.01999 1.21035 0.99479 0.93033 0.97606 1.21053 0.96416 0.97704 1.01960 1.20982 0.95642 0.98471 0.96557 1.20769 1.00428 0.92613 1.02578 1.22222 0.94314 0.88531 1.02038 0.92841 0.95787 0.95753 0.94593 0.94651 0.91045 0.91292 0.90796 0.90875 0.93688 0.90057 0.85164 0.86057 0.86376 0.86102 0.85883 0.92758 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.69 5.34 -27.88 -0.15 0.54 16 10 C 0.07 1.56 5.69 37.16 0.21 1.77 16 11 O -0.39 -7.75 9.99 -35.23 -0.35 -8.10 16 12 C 0.09 1.44 2.77 -26.65 -0.07 1.36 16 13 H 0.06 1.02 7.79 -51.93 -0.40 0.61 16 14 C -0.15 -1.95 5.62 -26.60 -0.15 -2.10 16 15 C -0.12 -1.21 6.09 -26.65 -0.16 -1.38 16 16 C 0.06 0.61 5.26 -3.83 -0.02 0.59 16 17 N -0.49 -6.01 4.70 -171.14 -0.80 -6.81 16 18 C 0.12 1.41 5.64 -83.78 -0.47 0.93 16 19 C -0.17 -2.01 8.82 -39.38 -0.35 -2.35 16 20 C -0.09 -0.95 10.04 -39.61 -0.40 -1.34 16 21 C -0.15 -1.41 10.04 -39.55 -0.40 -1.81 16 22 C -0.10 -0.90 10.04 -39.61 -0.40 -1.29 16 23 C -0.14 -1.48 9.16 -39.38 -0.36 -1.84 16 24 C 0.06 0.77 3.80 -3.84 -0.01 0.76 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.77 8.09 -51.93 -0.42 0.35 16 29 H 0.04 0.74 7.94 -51.93 -0.41 0.33 16 30 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.72 6.72 -51.93 -0.35 0.37 16 36 H 0.13 1.53 5.81 -52.49 -0.30 1.22 16 37 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 38 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 40 H 0.12 1.10 7.17 -52.49 -0.38 0.72 16 41 H 0.05 0.76 7.74 -51.93 -0.40 0.36 16 42 H 0.09 1.27 6.98 -51.93 -0.36 0.91 16 LS Contribution 336.95 15.07 5.08 5.08 Total: -1.00 -30.98 336.95 -10.29 -41.27 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -6.79 Total: -1.91 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -3.14 Total: -19.86 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: -0.07 Total: -33.10 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -0.35 Total: -8.10 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.98 -10.29 -41.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205631181.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.045 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds