Wall clock time and date at job start Mon Mar 30 2020 01:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00368 * 2 1 4 4 H 1.48500 * 109.47143 * 269.99439 * 3 2 1 5 5 H 1.48498 * 109.47241 * 29.99360 * 3 2 1 6 6 H 1.48496 * 109.47523 * 149.99644 * 3 2 1 7 7 C 1.37881 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00413 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99708 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46904 * 179.97438 * 9 7 2 11 11 O 1.42906 * 109.46779 * 179.97438 * 10 9 7 12 12 C 1.42898 * 113.99730 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.53801 * 30.09922 * 12 11 10 14 14 C 1.53124 * 109.50233 * 270.00313 * 12 11 10 15 15 C 1.53126 * 109.15878 * 182.40634 * 14 12 11 16 16 C 1.53037 * 109.27801 * 57.65645 * 15 14 12 17 17 N 1.46854 * 109.51886 * 300.81620 * 16 15 14 18 18 C 1.39677 * 110.99764 * 185.84178 * 17 16 15 19 19 C 1.38911 * 120.07456 * 235.77329 * 18 17 16 20 20 C 1.38109 * 119.92070 * 179.76958 * 19 18 17 21 21 C 1.38279 * 120.07767 * 0.50649 * 20 19 18 22 22 C 1.38288 * 120.14878 * 359.74450 * 21 20 19 23 23 C 1.38102 * 120.07757 * 0.02562 * 22 21 20 24 24 C 1.46844 * 111.19703 * 61.74789 * 17 16 15 25 25 H 0.97007 * 119.99590 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47260 * 59.99171 * 9 7 2 27 27 H 1.09005 * 109.46936 * 299.99605 * 9 7 2 28 28 H 1.09006 * 109.47436 * 59.99973 * 10 9 7 29 29 H 1.09000 * 109.47279 * 299.99236 * 10 9 7 30 30 H 1.08998 * 109.52745 * 62.49962 * 14 12 11 31 31 H 1.08999 * 109.52030 * 302.30418 * 14 12 11 32 32 H 1.09000 * 109.49775 * 177.59563 * 15 14 12 33 33 H 1.08992 * 109.50023 * 297.71261 * 15 14 12 34 34 H 1.08994 * 109.46593 * 60.83220 * 16 15 14 35 35 H 1.09004 * 109.45972 * 180.81661 * 16 15 14 36 36 H 1.07996 * 120.03433 * 0.02562 * 19 18 17 37 37 H 1.08003 * 119.95657 * 180.24909 * 20 19 18 38 38 H 1.07997 * 119.92739 * 179.76473 * 21 20 19 39 39 H 1.08006 * 119.96179 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.04055 * 180.02562 * 23 22 21 41 41 H 1.09002 * 109.46133 * 58.27161 * 24 17 16 42 42 H 1.09002 * 109.46165 * 178.24800 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5305 -4.8996 0.0011 12 6 2.3704 -6.0557 0.0006 13 1 3.3041 -5.8283 0.5151 14 6 2.6699 -6.4694 -1.4430 15 6 3.5201 -7.7429 -1.4348 16 6 2.7748 -8.8431 -0.6757 17 7 2.5126 -8.3992 0.6994 18 6 1.9509 -9.4281 1.4589 19 6 0.7368 -9.2333 2.1051 20 6 0.1820 -10.2544 2.8514 21 6 0.8387 -11.4660 2.9644 22 6 2.0501 -11.6615 2.3266 23 6 2.6083 -10.6464 1.5749 24 6 1.6586 -7.2048 0.7181 25 1 -0.4850 0.8401 -0.0004 26 1 0.6245 -2.5570 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 2.8719 -3.6044 0.8905 29 1 2.8717 -3.6045 -0.8895 30 1 3.2155 -5.6705 -1.9452 31 1 1.7343 -6.6594 -1.9689 32 1 3.7008 -8.0663 -2.4599 33 1 4.4717 -7.5419 -0.9429 34 1 1.8295 -9.0531 -1.1760 35 1 3.3838 -9.7469 -0.6555 36 1 0.2254 -8.2859 2.0206 37 1 -0.7640 -10.1049 3.3507 38 1 0.4045 -12.2616 3.5517 39 1 2.5603 -12.6093 2.4166 40 1 3.5542 -10.7999 1.0768 41 1 0.7184 -7.4226 0.2112 42 1 1.4568 -6.9187 1.7504 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205631181.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:53 Heat of formation + Delta-G solvation = -43.877898 kcal Electronic energy + Delta-G solvation = -20760.934703 eV Core-core repulsion = 17704.558246 eV Total energy + Delta-G solvation = -3056.376457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.43039 -39.53470 -37.91188 -35.43025 -34.31818 -32.59730 -31.87239 -30.53630 -29.87860 -26.72085 -25.67696 -24.52719 -22.93812 -22.54131 -22.28588 -20.83610 -18.96320 -18.50525 -17.23088 -16.80983 -16.62587 -16.49972 -16.17477 -16.01335 -15.63638 -15.11865 -14.68548 -14.59820 -14.38449 -14.34803 -14.21890 -13.68301 -13.34340 -13.15166 -13.10705 -12.65939 -12.47806 -12.32939 -12.17957 -12.01552 -11.86617 -11.70843 -11.66742 -11.39848 -11.36738 -10.70375 -10.64018 -10.34971 -9.85065 -8.82096 -8.25202 -6.38527 0.45704 0.49468 1.40192 1.42644 1.53876 2.27108 2.42925 2.84756 3.08717 3.20569 3.66749 3.69403 3.93515 3.99088 4.08467 4.13411 4.19570 4.32060 4.37801 4.39724 4.45083 4.48046 4.55871 4.60909 4.65021 4.74175 4.79303 4.86127 4.95003 4.98857 5.10353 5.15884 5.27173 5.32824 5.36978 5.52931 5.55432 5.66633 5.70900 5.86471 5.95896 6.10447 6.32346 6.41156 6.77223 7.31380 8.87953 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030890 B = 0.003097 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.233300 B = 9037.955015 C = 9640.485466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.029 3.971 10 C 0.089 3.911 11 O -0.407 6.407 12 C 0.086 3.914 13 H 0.065 0.935 14 C -0.143 4.143 15 C -0.107 4.107 16 C 0.056 3.944 17 N -0.490 5.490 18 C 0.097 3.903 19 C -0.193 4.193 20 C -0.103 4.103 21 C -0.153 4.153 22 C -0.097 4.097 23 C -0.147 4.147 24 C 0.066 3.934 25 H 0.266 0.734 26 H -0.006 1.006 27 H -0.007 1.007 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.134 0.866 38 H 0.143 0.857 39 H 0.150 0.850 40 H 0.139 0.861 41 H 0.046 0.954 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.518 -24.861 1.284 25.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.086 0.914 9 C -0.008 4.008 10 C 0.013 3.987 11 O -0.326 6.326 12 C 0.028 3.972 13 H 0.083 0.917 14 C -0.181 4.181 15 C -0.145 4.145 16 C -0.069 4.069 17 N -0.206 5.206 18 C -0.001 4.001 19 C -0.214 4.214 20 C -0.121 4.121 21 C -0.171 4.171 22 C -0.115 4.115 23 C -0.168 4.168 24 C -0.061 4.061 25 H 0.075 0.925 26 H 0.013 0.987 27 H 0.011 0.989 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.123 0.877 36 H 0.135 0.865 37 H 0.152 0.848 38 H 0.161 0.839 39 H 0.168 0.832 40 H 0.156 0.844 41 H 0.064 0.936 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.654 -24.565 1.424 25.490 hybrid contribution -0.632 1.189 -0.200 1.361 sum 6.022 -23.376 1.224 24.170 Atomic orbital electron populations 1.70130 1.08058 1.28114 1.50895 1.26055 0.95824 1.03696 0.94255 0.85302 0.78569 0.77608 0.78688 1.19466 1.20621 1.18402 1.21464 0.93723 0.91412 1.51771 0.91433 1.18930 0.94596 0.91869 0.95449 1.22498 0.94714 0.82414 0.99047 1.87864 1.35308 1.14291 1.95143 1.22098 0.93408 0.85333 0.96370 0.91702 1.22107 1.00870 0.99096 0.96008 1.21570 0.98554 0.92785 1.01541 1.22392 1.00220 0.99250 0.84991 1.58949 1.44200 1.03929 1.13510 1.19161 0.92339 0.91477 0.97073 1.21518 0.95693 1.00909 1.03313 1.21277 1.00181 0.93200 0.97462 1.21411 0.96388 0.97748 1.01599 1.21366 0.95502 0.99251 0.95400 1.21004 1.00915 0.92052 1.02781 1.22006 0.94191 0.89016 1.00892 0.92515 0.98742 0.98854 0.93885 0.93500 0.91551 0.91969 0.88280 0.90504 0.94060 0.87697 0.86484 0.84783 0.83897 0.83211 0.84352 0.93579 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.91 13.29 21.45 0.28 -57.62 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.46 16 3 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.55 -31.70 9.11 25.60 0.23 -31.46 16 8 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 9 C 0.03 1.62 5.34 29.85 0.16 1.78 16 10 C 0.09 4.01 5.69 71.98 0.41 4.42 16 11 O -0.41 -16.98 9.99 -148.98 -1.49 -18.47 16 12 C 0.09 2.73 2.77 30.65 0.08 2.82 16 13 H 0.06 2.05 7.79 -2.39 -0.02 2.03 16 14 C -0.14 -3.78 5.62 30.68 0.17 -3.61 16 15 C -0.11 -2.03 6.09 30.65 0.19 -1.84 16 16 C 0.06 1.08 5.26 86.32 0.45 1.53 16 17 N -0.49 -11.80 4.70 -695.38 -3.27 -15.07 16 18 C 0.10 2.25 5.64 38.22 0.22 2.46 16 19 C -0.19 -4.61 8.82 22.40 0.20 -4.42 16 20 C -0.10 -2.01 10.04 22.25 0.22 -1.79 16 21 C -0.15 -2.47 10.04 22.29 0.22 -2.25 16 22 C -0.10 -1.50 10.04 22.25 0.22 -1.28 16 23 C -0.15 -2.73 9.16 22.40 0.21 -2.52 16 24 C 0.07 1.91 3.80 86.33 0.33 2.23 16 25 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 26 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 27 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 28 H 0.04 1.85 8.09 -2.38 -0.02 1.84 16 29 H 0.05 1.98 7.94 -2.39 -0.02 1.96 16 30 H 0.07 1.81 7.94 -2.39 -0.02 1.79 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 32 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.10 1.54 6.72 -2.38 -0.02 1.53 16 36 H 0.12 2.97 5.81 -2.91 -0.02 2.96 16 37 H 0.13 2.15 8.06 -2.91 -0.02 2.12 16 38 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.14 2.06 7.17 -2.91 -0.02 2.04 16 41 H 0.05 1.37 7.74 -2.39 -0.02 1.35 16 42 H 0.08 2.34 6.98 -2.39 -0.02 2.32 16 Total: -1.00 -68.21 336.95 2.31 -65.90 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.98 Total: 12.37 kcal Atomic # 6 Polarization: -37.24 SS G_CDS: 3.78 Total: -33.46 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -2.98 Total: -72.69 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -1.49 Total: -18.47 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -68.21 2.31 -65.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205631181.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.026 kcal (2) G-P(sol) polarization free energy of solvation -68.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds