Wall clock time and date at job start Mon Mar 30 2020 01:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00540 * 2 1 4 4 H 1.48501 * 109.46801 * 239.99728 * 3 2 1 5 5 H 1.48495 * 109.46819 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47309 * 119.99754 * 3 2 1 7 7 C 1.37878 * 119.99428 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00368 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00580 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47563 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47098 * 180.02562 * 10 9 7 12 12 O 1.42901 * 109.46922 * 180.02562 * 11 10 9 13 13 C 1.42905 * 113.99831 * 180.02562 * 12 11 10 14 14 C 1.53932 * 113.73031 * 246.72289 * 13 12 11 15 15 N 1.47959 * 86.18045 * 221.91948 * 14 13 12 16 16 C 1.46902 * 110.99905 * 137.58303 * 15 14 13 17 17 C 1.50699 * 109.47319 * 70.64321 * 16 15 14 18 18 C 1.38241 * 119.99730 * 269.72767 * 17 16 15 19 19 C 1.38235 * 120.00010 * 179.81024 * 18 17 16 20 20 C 1.38239 * 119.99861 * 0.39401 * 19 18 17 21 21 C 1.38242 * 119.99808 * 359.85603 * 20 19 18 22 22 C 1.38231 * 120.00139 * 89.99601 * 17 16 15 23 23 C 1.47957 * 90.76368 * 24.69138 * 15 14 13 24 24 H 0.97002 * 119.99076 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46515 * 59.99652 * 9 7 2 26 26 H 1.09000 * 109.46604 * 300.00314 * 9 7 2 27 27 H 1.09001 * 109.46856 * 60.00432 * 10 9 7 28 28 H 1.08997 * 109.47185 * 300.00565 * 10 9 7 29 29 H 1.08994 * 109.47400 * 60.00307 * 11 10 9 30 30 H 1.09006 * 109.46774 * 299.99825 * 11 10 9 31 31 H 1.08998 * 113.00808 * 18.35731 * 13 12 11 32 32 H 1.09004 * 113.75969 * 336.23744 * 14 13 12 33 33 H 1.08999 * 113.76302 * 107.60200 * 14 13 12 34 34 H 1.09007 * 109.46697 * 190.64055 * 16 15 14 35 35 H 1.09001 * 109.46915 * 310.63777 * 16 15 14 36 36 H 1.08001 * 119.99806 * 359.97438 * 18 17 16 37 37 H 1.07992 * 119.99955 * 180.22847 * 19 18 17 38 38 H 1.07994 * 120.00083 * 179.83533 * 20 19 18 39 39 H 1.07997 * 119.99858 * 179.97438 * 21 20 19 40 40 H 1.07995 * 120.00180 * 359.97438 * 22 17 16 41 41 H 1.09000 * 113.75975 * 220.99328 * 23 15 14 42 42 H 1.09001 * 113.86215 * 89.63937 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6961 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1943 0.0010 9 6 1.2509 -2.4993 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4799 -4.9872 -0.0001 12 8 2.4084 -6.0734 0.0005 13 6 1.7938 -7.3635 -0.0006 14 6 2.0287 -8.1627 1.2938 15 7 2.2421 -9.3336 0.4149 16 6 3.3857 -10.1341 0.8728 17 6 3.0257 -10.8356 2.1570 18 6 3.2711 -10.2228 3.3717 19 6 2.9374 -10.8646 4.5496 20 6 2.3656 -12.1227 4.5132 21 6 2.1249 -12.7376 3.2987 22 6 2.4552 -12.0942 2.1207 23 6 2.6297 -8.4475 -0.7048 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.8716 -3.6045 0.8906 28 1 2.8717 -3.6045 -0.8894 29 1 0.8536 -5.0447 -0.8903 30 1 0.8529 -5.0451 0.8897 31 1 0.7512 -7.3384 -0.3177 32 1 2.9195 -7.8575 1.8429 33 1 1.1448 -8.2438 1.9264 34 1 3.6387 -10.8739 0.1132 35 1 4.2415 -9.4808 1.0431 36 1 3.7213 -9.2414 3.4001 37 1 3.1257 -10.3843 5.4983 38 1 2.1073 -12.6252 5.4335 39 1 1.6786 -13.7207 3.2703 40 1 2.2670 -12.5746 1.1719 41 1 2.2260 -8.7560 -1.6691 42 1 3.6960 -8.2246 -0.7420 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205656307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:04 Heat of formation + Delta-G solvation = 0.021275 kcal Electronic energy + Delta-G solvation = -19976.069298 eV Core-core repulsion = 16921.596452 eV Total energy + Delta-G solvation = -3054.472846 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.44358 -39.05298 -36.85024 -33.84713 -32.71370 -31.39363 -31.12607 -28.54493 -26.64039 -26.20596 -24.15889 -22.88722 -22.79688 -21.27313 -20.46650 -19.69898 -17.26096 -16.84767 -16.27660 -16.06241 -15.79616 -15.41314 -15.12977 -14.49151 -14.23816 -14.17492 -13.64803 -13.36475 -13.12629 -12.85253 -12.67245 -12.53121 -12.25274 -12.02319 -11.51943 -11.40601 -11.22195 -11.04052 -10.82147 -10.73034 -10.55030 -10.41527 -9.82878 -9.48694 -9.23945 -9.18566 -9.12498 -9.08132 -8.86985 -8.35489 -6.00868 -4.03200 1.09464 1.18230 3.33912 3.37860 3.40501 3.44204 3.82372 3.98534 4.35249 4.46522 4.58890 4.59831 4.77378 4.86976 4.93312 5.05711 5.12404 5.24028 5.27305 5.35019 5.38060 5.41006 5.50911 5.64996 5.73361 5.75065 5.76740 5.81498 5.95163 6.02777 6.18612 6.24703 6.28217 6.39214 6.67497 6.70416 6.75485 6.80508 7.08406 7.54913 7.65728 7.78189 7.98530 8.41346 9.03173 9.60758 11.10646 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034082 B = 0.002459 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.360634 B =11384.310090 C =11776.173478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.061 3.939 12 O -0.378 6.378 13 C 0.060 3.940 14 C -0.013 4.013 15 N -0.472 5.472 16 C 0.061 3.939 17 C -0.077 4.077 18 C -0.112 4.112 19 C -0.120 4.120 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.101 4.101 23 C 0.002 3.998 24 H 0.261 0.739 25 H 0.017 0.983 26 H 0.017 0.983 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.094 0.906 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.896 -25.480 4.818 26.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.145 4.145 11 C -0.015 4.015 12 O -0.296 6.296 13 C 0.000 4.000 14 C -0.142 4.142 15 N -0.196 5.196 16 C -0.067 4.067 17 C -0.078 4.078 18 C -0.130 4.130 19 C -0.138 4.138 20 C -0.141 4.141 21 C -0.141 4.141 22 C -0.119 4.119 23 C -0.127 4.127 24 H 0.071 0.929 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.113 0.887 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.437 -25.805 4.717 26.605 hybrid contribution 0.811 1.368 0.235 1.608 sum 5.248 -24.436 4.951 25.479 Atomic orbital electron populations 1.69957 1.06069 1.26763 1.50766 1.25030 0.94881 0.99312 0.95291 0.86619 0.79547 0.82961 0.78658 1.20205 1.21283 1.20210 1.21182 0.93076 0.90877 1.50722 0.92605 1.19042 0.93909 0.91050 0.97345 1.21656 0.99656 0.91803 1.01433 1.22870 0.92142 0.86868 0.99596 1.87962 1.34230 1.13163 1.94291 1.23980 0.97591 0.83342 0.95070 1.24541 1.02584 0.90018 0.97038 1.68559 1.32298 1.13496 1.05207 1.21578 0.92884 0.97697 0.94535 1.19715 0.99077 0.94798 0.94196 1.21123 1.00112 0.99671 0.92129 1.21142 0.99181 0.95356 0.98149 1.21160 0.99465 0.95553 0.97899 1.21149 1.00359 1.00013 0.92576 1.21021 0.98016 0.94610 0.98291 1.24294 1.00373 0.91338 0.96687 0.92914 0.96476 0.96473 0.92654 0.92614 0.93602 0.93683 0.88780 0.90347 0.89287 0.89688 0.92935 0.86223 0.86062 0.86237 0.86152 0.86032 0.88745 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 9 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 10 C -0.11 -2.31 5.52 -26.73 -0.15 -2.45 16 11 C 0.06 1.10 5.78 37.16 0.21 1.31 16 12 O -0.38 -6.26 10.36 -35.23 -0.37 -6.62 16 13 C 0.06 0.78 4.50 -25.80 -0.12 0.67 16 14 C -0.01 -0.16 6.79 -2.77 -0.02 -0.17 16 15 N -0.47 -5.26 6.25 -239.99 -1.50 -6.76 16 16 C 0.06 0.59 4.97 -4.98 -0.02 0.57 16 17 C -0.08 -0.77 5.12 -104.62 -0.54 -1.31 16 18 C -0.11 -1.09 8.98 -39.58 -0.36 -1.45 16 19 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 20 C -0.12 -1.03 10.05 -39.58 -0.40 -1.42 16 21 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 22 C -0.10 -0.93 9.70 -39.58 -0.38 -1.32 16 23 C 0.00 0.02 7.80 -2.77 -0.02 0.00 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.19 7.87 -51.93 -0.41 0.78 16 32 H 0.08 0.95 7.12 -51.93 -0.37 0.58 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 35 H 0.05 0.50 7.63 -51.93 -0.40 0.11 16 36 H 0.12 1.10 7.46 -52.49 -0.39 0.71 16 37 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.08 0.88 7.80 -51.93 -0.40 0.48 16 LS Contribution 348.99 15.07 5.26 5.26 Total: -1.00 -30.92 348.99 -11.03 -41.95 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -7.01 Total: -2.57 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -3.13 Total: -21.72 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: -0.76 Total: -33.07 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.37 Total: -6.62 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.92 -11.03 -41.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205656307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.971 kcal (2) G-P(sol) polarization free energy of solvation -30.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds