Wall clock time and date at job start Mon Mar 30 2020 01:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00540 * 2 1 4 4 H 1.48501 * 109.46801 * 239.99728 * 3 2 1 5 5 H 1.48495 * 109.46819 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47309 * 119.99754 * 3 2 1 7 7 C 1.37878 * 119.99428 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00368 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00580 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47563 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47098 * 180.02562 * 10 9 7 12 12 O 1.42901 * 109.46922 * 180.02562 * 11 10 9 13 13 C 1.42905 * 113.99831 * 180.02562 * 12 11 10 14 14 C 1.53932 * 113.73031 * 246.72289 * 13 12 11 15 15 N 1.47959 * 86.18045 * 221.91948 * 14 13 12 16 16 C 1.46902 * 110.99905 * 137.58303 * 15 14 13 17 17 C 1.50699 * 109.47319 * 70.64321 * 16 15 14 18 18 C 1.38241 * 119.99730 * 269.72767 * 17 16 15 19 19 C 1.38235 * 120.00010 * 179.81024 * 18 17 16 20 20 C 1.38239 * 119.99861 * 0.39401 * 19 18 17 21 21 C 1.38242 * 119.99808 * 359.85603 * 20 19 18 22 22 C 1.38231 * 120.00139 * 89.99601 * 17 16 15 23 23 C 1.47957 * 90.76368 * 24.69138 * 15 14 13 24 24 H 0.97002 * 119.99076 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46515 * 59.99652 * 9 7 2 26 26 H 1.09000 * 109.46604 * 300.00314 * 9 7 2 27 27 H 1.09001 * 109.46856 * 60.00432 * 10 9 7 28 28 H 1.08997 * 109.47185 * 300.00565 * 10 9 7 29 29 H 1.08994 * 109.47400 * 60.00307 * 11 10 9 30 30 H 1.09006 * 109.46774 * 299.99825 * 11 10 9 31 31 H 1.08998 * 113.00808 * 18.35731 * 13 12 11 32 32 H 1.09004 * 113.75969 * 336.23744 * 14 13 12 33 33 H 1.08999 * 113.76302 * 107.60200 * 14 13 12 34 34 H 1.09007 * 109.46697 * 190.64055 * 16 15 14 35 35 H 1.09001 * 109.46915 * 310.63777 * 16 15 14 36 36 H 1.08001 * 119.99806 * 359.97438 * 18 17 16 37 37 H 1.07992 * 119.99955 * 180.22847 * 19 18 17 38 38 H 1.07994 * 120.00083 * 179.83533 * 20 19 18 39 39 H 1.07997 * 119.99858 * 179.97438 * 21 20 19 40 40 H 1.07995 * 120.00180 * 359.97438 * 22 17 16 41 41 H 1.09000 * 113.75975 * 220.99328 * 23 15 14 42 42 H 1.09001 * 113.86215 * 89.63937 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6961 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1943 0.0010 9 6 1.2509 -2.4993 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4799 -4.9872 -0.0001 12 8 2.4084 -6.0734 0.0005 13 6 1.7938 -7.3635 -0.0006 14 6 2.0287 -8.1627 1.2938 15 7 2.2421 -9.3336 0.4149 16 6 3.3857 -10.1341 0.8728 17 6 3.0257 -10.8356 2.1570 18 6 3.2711 -10.2228 3.3717 19 6 2.9374 -10.8646 4.5496 20 6 2.3656 -12.1227 4.5132 21 6 2.1249 -12.7376 3.2987 22 6 2.4552 -12.0942 2.1207 23 6 2.6297 -8.4475 -0.7048 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.8716 -3.6045 0.8906 28 1 2.8717 -3.6045 -0.8894 29 1 0.8536 -5.0447 -0.8903 30 1 0.8529 -5.0451 0.8897 31 1 0.7512 -7.3384 -0.3177 32 1 2.9195 -7.8575 1.8429 33 1 1.1448 -8.2438 1.9264 34 1 3.6387 -10.8739 0.1132 35 1 4.2415 -9.4808 1.0431 36 1 3.7213 -9.2414 3.4001 37 1 3.1257 -10.3843 5.4983 38 1 2.1073 -12.6252 5.4335 39 1 1.6786 -13.7207 3.2703 40 1 2.2670 -12.5746 1.1719 41 1 2.2260 -8.7560 -1.6691 42 1 3.6960 -8.2246 -0.7420 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205656307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:04 Heat of formation + Delta-G solvation = -18.416923 kcal Electronic energy + Delta-G solvation = -19976.868838 eV Core-core repulsion = 16921.596452 eV Total energy + Delta-G solvation = -3055.272386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.33816 -39.81614 -38.11414 -35.78723 -33.76568 -33.10163 -31.77960 -29.51422 -28.40682 -27.14077 -25.26634 -24.54699 -23.46345 -22.20267 -21.93946 -20.83717 -18.66340 -18.05698 -17.56098 -17.09678 -16.84465 -16.50526 -16.24675 -16.13426 -15.26639 -15.23670 -14.57258 -14.38612 -14.27216 -14.21667 -13.84152 -13.57786 -13.48778 -13.26897 -13.01566 -12.83239 -12.51187 -12.43299 -12.12000 -11.97589 -11.79531 -11.65667 -11.58505 -11.42673 -11.20094 -10.56146 -10.44166 -10.06063 -9.80520 -9.60642 -8.21398 -6.32510 0.41598 0.51202 1.40498 1.43708 1.51723 2.39265 2.56904 2.84871 3.08032 3.11912 3.46320 3.76332 3.91777 3.96771 4.10157 4.17768 4.18681 4.22764 4.29230 4.35285 4.42219 4.55946 4.59066 4.62649 4.65877 4.74079 4.77754 4.85643 4.92677 5.00804 5.09245 5.15242 5.17247 5.21724 5.48794 5.58317 5.63102 5.69255 5.69536 5.82179 5.91746 6.12677 6.18361 6.31968 6.83098 7.36578 8.90434 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034082 B = 0.002459 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.360634 B =11384.310090 C =11776.173478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.096 4.096 11 C 0.073 3.927 12 O -0.390 6.390 13 C 0.047 3.953 14 C -0.008 4.008 15 N -0.473 5.473 16 C 0.063 3.937 17 C -0.092 4.092 18 C -0.127 4.127 19 C -0.131 4.131 20 C -0.128 4.128 21 C -0.128 4.128 22 C -0.112 4.112 23 C 0.009 3.991 24 H 0.265 0.735 25 H -0.003 1.003 26 H -0.004 1.004 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.051 0.949 36 H 0.118 0.882 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.132 0.868 41 H 0.109 0.891 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.650 -26.389 4.949 27.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.010 4.010 10 C -0.134 4.134 11 C -0.003 4.003 12 O -0.308 6.308 13 C -0.012 4.012 14 C -0.137 4.137 15 N -0.197 5.197 16 C -0.065 4.065 17 C -0.092 4.092 18 C -0.146 4.146 19 C -0.149 4.149 20 C -0.146 4.146 21 C -0.146 4.146 22 C -0.130 4.130 23 C -0.119 4.119 24 H 0.073 0.927 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.069 0.931 36 H 0.136 0.864 37 H 0.152 0.848 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.150 0.850 41 H 0.128 0.872 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.202 -26.737 4.847 27.666 hybrid contribution 0.556 1.557 0.223 1.669 sum 5.758 -25.180 5.070 26.323 Atomic orbital electron populations 1.70084 1.07751 1.27950 1.51435 1.25989 0.95832 1.03394 0.94614 0.85473 0.78269 0.77948 0.79211 1.19153 1.20683 1.19187 1.21629 0.93566 0.92279 1.50924 0.92245 1.18921 0.94242 0.92515 0.95290 1.21394 0.98591 0.92193 1.01229 1.22544 0.91674 0.86014 1.00073 1.87918 1.34304 1.14054 1.94551 1.24286 0.98293 0.82037 0.96549 1.24462 1.02407 0.90184 0.96627 1.68571 1.33151 1.13081 1.04910 1.21595 0.92206 0.97697 0.94968 1.19814 0.99835 0.95347 0.94212 1.21246 1.00748 0.99916 0.92658 1.21400 0.99157 0.95840 0.98490 1.21481 0.98833 0.95384 0.98896 1.21464 0.99920 1.00884 0.92321 1.21241 0.98020 0.94527 0.99216 1.24294 1.00176 0.90169 0.97248 0.92654 0.98460 0.98535 0.92850 0.92694 0.93012 0.93379 0.88248 0.90658 0.89441 0.88434 0.93063 0.86392 0.84760 0.84157 0.84063 0.85031 0.87233 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.55 -31.57 9.11 25.60 0.23 -31.34 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.47 4.97 29.85 0.15 1.62 16 10 C -0.10 -4.15 5.52 30.59 0.17 -3.98 16 11 C 0.07 2.61 5.78 71.98 0.42 3.02 16 12 O -0.39 -12.60 10.36 -148.98 -1.54 -14.15 16 13 C 0.05 1.19 4.50 31.24 0.14 1.33 16 14 C -0.01 -0.18 6.79 86.40 0.59 0.40 16 15 N -0.47 -9.93 6.25 -916.39 -5.73 -15.66 16 16 C 0.06 1.15 4.97 85.56 0.43 1.57 16 17 C -0.09 -1.74 5.12 -19.87 -0.10 -1.84 16 18 C -0.13 -2.42 8.98 22.27 0.20 -2.22 16 19 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 20 C -0.13 -1.93 10.05 22.27 0.22 -1.70 16 21 C -0.13 -1.93 10.05 22.27 0.22 -1.71 16 22 C -0.11 -1.91 9.70 22.27 0.22 -1.69 16 23 C 0.01 0.19 7.80 86.41 0.67 0.87 16 24 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 25 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 26 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.05 2.34 8.14 -2.39 -0.02 2.33 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.10 2.40 7.87 -2.39 -0.02 2.38 16 32 H 0.08 1.79 7.12 -2.38 -0.02 1.77 16 33 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.10 1.51 8.09 -2.38 -0.02 1.49 16 35 H 0.05 0.94 7.63 -2.39 -0.02 0.92 16 36 H 0.12 2.17 7.46 -2.91 -0.02 2.15 16 37 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 38 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 39 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 40 H 0.13 1.89 8.06 -2.91 -0.02 1.86 16 41 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.08 1.67 7.80 -2.39 -0.02 1.65 16 Total: -1.00 -65.40 348.99 0.24 -65.16 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.96 Total: 11.98 kcal Atomic # 6 Polarization: -41.47 SS G_CDS: 4.24 Total: -37.23 kcal Atomic # 7 Polarization: -66.83 SS G_CDS: -5.45 Total: -72.28 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -1.54 Total: -14.15 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -65.40 0.24 -65.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205656307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.740 kcal (2) G-P(sol) polarization free energy of solvation -65.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds