Wall clock time and date at job start Mon Mar 30 2020 01:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48504 * 109.47237 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47432 * 120.00082 * 3 2 1 6 6 H 1.48503 * 109.47036 * 240.00090 * 3 2 1 7 7 C 1.37877 * 120.00278 * 180.27456 * 2 1 3 8 8 H 1.07995 * 119.99942 * 183.01604 * 7 2 1 9 9 C 1.50692 * 119.99788 * 3.01423 * 7 2 1 10 10 H 1.09000 * 109.47365 * 332.33350 * 9 7 2 11 11 O 1.42898 * 109.47224 * 212.33406 * 9 7 2 12 12 C 1.42906 * 114.00256 * 90.00218 * 11 9 7 13 13 C 1.52995 * 109.47071 * 180.02562 * 12 11 9 14 14 N 1.46903 * 109.47079 * 65.00444 * 13 12 11 15 15 C 1.48529 * 111.00427 * 52.59951 * 14 13 12 16 16 C 1.54927 * 103.23004 * 159.72235 * 15 14 13 17 17 C 1.54596 * 102.92323 * 322.58677 * 16 15 14 18 18 C 1.47900 * 111.00130 * 169.99653 * 14 13 12 19 19 C 1.50706 * 109.47025 * 92.33859 * 9 7 2 20 20 C 1.38234 * 120.00206 * 82.40639 * 19 9 7 21 21 C 1.38238 * 119.99713 * 179.78974 * 20 19 9 22 22 C 1.38237 * 120.00049 * 0.43821 * 21 20 19 23 23 C 1.38231 * 120.00075 * 359.81603 * 22 21 20 24 24 C 1.38232 * 119.99639 * 262.67865 * 19 9 7 25 25 H 0.96998 * 119.99713 * 174.81290 * 1 2 3 26 26 H 1.09001 * 109.46427 * 300.00389 * 12 11 9 27 27 H 1.08993 * 109.46406 * 59.99813 * 12 11 9 28 28 H 1.09001 * 109.46779 * 184.99410 * 13 12 11 29 29 H 1.08990 * 109.47570 * 304.99916 * 13 12 11 30 30 H 1.09007 * 110.66817 * 278.15900 * 15 14 13 31 31 H 1.09006 * 110.66758 * 41.28448 * 15 14 13 32 32 H 1.09000 * 110.72868 * 204.22987 * 16 15 14 33 33 H 1.09004 * 110.72852 * 80.94354 * 16 15 14 34 34 H 1.09008 * 110.30805 * 263.04467 * 17 16 15 35 35 H 1.09003 * 110.39680 * 140.91819 * 17 16 15 36 36 H 1.09000 * 109.91805 * 333.50621 * 18 14 13 37 37 H 1.08999 * 109.91787 * 94.59723 * 18 14 13 38 38 H 1.07994 * 119.99894 * 359.97438 * 20 19 9 39 39 H 1.07995 * 119.99701 * 180.27323 * 21 20 19 40 40 H 1.07998 * 119.99441 * 179.83385 * 22 21 20 41 41 H 1.07995 * 120.00014 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.00131 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6966 1.2124 6 1 3.1028 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0057 8 1 3.0834 -1.1948 0.0435 9 6 1.2527 -2.4978 -0.0806 10 1 0.2620 -2.3715 0.3560 11 8 1.9674 -3.5020 0.6424 12 6 1.6036 -3.5954 2.0212 13 6 2.4274 -4.6960 2.6926 14 7 3.8465 -4.3160 2.6901 15 6 4.0362 -2.9624 3.2712 16 6 5.5334 -2.9540 3.6692 17 6 5.7643 -4.3959 4.1769 18 6 4.6422 -5.2327 3.5351 19 6 1.1169 -2.9173 -1.5217 20 6 2.1572 -3.5750 -2.1511 21 6 2.0308 -3.9636 -3.4717 22 6 0.8677 -3.6865 -4.1655 23 6 -0.1705 -3.0242 -3.5376 24 6 -0.0458 -2.6394 -2.2157 25 1 -0.4849 -0.8366 -0.0759 26 1 1.7999 -2.6432 2.5140 27 1 0.5432 -3.8344 2.1017 28 1 2.0886 -4.8278 3.7202 29 1 2.3004 -5.6300 2.1455 30 1 3.8315 -2.1922 2.5274 31 1 3.4040 -2.8285 4.1491 32 1 5.7173 -2.2312 4.4641 33 1 6.1617 -2.7448 2.8033 34 1 5.6880 -4.4310 5.2638 35 1 6.7397 -4.7605 3.8548 36 1 4.0105 -5.6644 4.3115 37 1 5.0705 -6.0254 2.9218 38 1 3.0674 -3.7878 -1.6103 39 1 2.8419 -4.4813 -3.9622 40 1 0.7702 -3.9878 -5.1980 41 1 -1.0790 -2.8073 -4.0798 42 1 -0.8570 -2.1220 -1.7251 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206309307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:45 Heat of formation + Delta-G solvation = -22.106490 kcal Electronic energy + Delta-G solvation = -21639.706597 eV Core-core repulsion = 18584.274219 eV Total energy + Delta-G solvation = -3055.432378 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.86475 -38.42495 -36.47282 -33.42443 -32.16656 -30.44751 -30.04034 -28.75220 -27.51360 -25.89429 -23.16550 -22.54660 -21.61868 -20.67203 -20.35169 -20.07738 -17.20010 -16.22526 -15.83082 -15.73648 -15.54941 -14.56760 -14.14006 -13.85195 -13.72376 -13.68001 -13.31186 -13.16091 -12.63335 -12.51400 -12.22437 -12.11731 -11.78722 -11.51954 -11.27994 -11.04595 -10.95838 -10.85656 -10.78646 -10.45074 -10.32208 -10.21602 -10.16891 -9.59739 -9.51027 -8.57536 -8.27955 -8.09726 -8.06119 -7.60295 -6.47058 -4.21891 2.22765 2.26285 3.38232 3.41746 3.59043 4.24681 4.41817 4.58041 4.78072 4.83525 4.91833 5.07907 5.25250 5.45353 5.52061 5.62175 5.63781 5.68091 5.71009 5.81068 5.84435 5.87429 5.94698 5.98224 6.08239 6.18162 6.20842 6.33333 6.40492 6.44482 6.46533 6.52116 6.75192 6.91736 6.92416 7.21033 7.25928 7.34513 7.38816 7.61262 7.84507 7.96643 8.15686 8.62527 8.71411 9.50508 10.86642 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013599 B = 0.006380 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.527575 B = 4387.391451 C = 5671.325793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.026 3.974 3 Si 1.067 2.933 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.595 4.595 8 H 0.061 0.939 9 C 0.226 3.774 10 H 0.030 0.970 11 O -0.376 6.376 12 C 0.075 3.925 13 C 0.053 3.947 14 N -0.501 5.501 15 C 0.034 3.966 16 C -0.124 4.124 17 C -0.130 4.130 18 C 0.033 3.967 19 C -0.034 4.034 20 C -0.102 4.102 21 C -0.131 4.131 22 C -0.150 4.150 23 C -0.126 4.126 24 C -0.121 4.121 25 H 0.268 0.732 26 H 0.051 0.949 27 H 0.033 0.967 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.120 0.880 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.361 -7.935 4.266 10.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.179 4.179 3 Si 0.894 3.106 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.633 4.633 8 H 0.079 0.921 9 C 0.169 3.831 10 H 0.048 0.952 11 O -0.296 6.296 12 C -0.003 4.003 13 C -0.076 4.076 14 N -0.225 5.225 15 C -0.094 4.094 16 C -0.162 4.162 17 C -0.168 4.168 18 C -0.095 4.095 19 C -0.034 4.034 20 C -0.120 4.120 21 C -0.149 4.149 22 C -0.169 4.169 23 C -0.144 4.144 24 C -0.139 4.139 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.093 0.907 38 H 0.138 0.862 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.448 -6.431 3.708 9.208 hybrid contribution -0.361 -1.414 0.759 1.645 sum 5.087 -7.845 4.467 10.363 Atomic orbital electron populations 1.70862 1.06839 1.30785 1.45492 1.25880 0.96408 1.02692 0.92966 0.83576 0.75022 0.75153 0.76839 1.20699 1.21224 1.21177 1.22275 0.95358 0.90875 1.54791 0.92112 1.18842 0.92753 0.86569 0.84888 0.95234 1.87800 1.65055 1.57903 1.18843 1.22229 0.95441 0.97277 0.85348 1.22329 0.88014 0.99403 0.97811 1.64768 1.08000 1.01768 1.48002 1.23295 0.95042 0.92756 0.98263 1.22476 0.96973 0.95850 1.00871 1.22382 0.98864 0.95970 0.99557 1.22894 0.95208 0.96371 0.95035 1.20434 0.92211 0.92637 0.98142 1.20922 0.99051 0.98158 0.93863 1.21018 0.97411 1.01436 0.95043 1.20846 0.94668 1.02267 0.99085 1.20931 0.98508 0.99940 0.95043 1.20955 0.97882 1.00476 0.94631 0.91953 0.93115 0.94847 0.94406 0.90421 0.88391 0.94447 0.91451 0.90699 0.92020 0.91351 0.94473 0.90747 0.86217 0.87336 0.87479 0.87266 0.86712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 13.62 55.43 0.75 -25.14 16 2 C 0.03 0.70 5.46 -17.82 -0.10 0.61 16 3 Si 1.07 24.73 29.90 -169.99 -5.08 19.64 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 6 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.60 -16.24 8.62 -34.44 -0.30 -16.54 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.23 5.67 2.22 -29.04 -0.06 5.60 16 10 H 0.03 0.79 5.89 -51.93 -0.31 0.48 16 11 O -0.38 -8.74 9.16 -35.23 -0.32 -9.07 16 12 C 0.07 1.48 5.56 37.16 0.21 1.68 16 13 C 0.05 0.86 5.41 -3.82 -0.02 0.84 16 14 N -0.50 -8.24 5.34 -230.46 -1.23 -9.47 16 15 C 0.03 0.55 5.08 -1.91 -0.01 0.54 16 16 C -0.12 -1.63 7.06 -24.88 -0.18 -1.80 16 17 C -0.13 -1.49 6.93 -25.38 -0.18 -1.66 16 18 C 0.03 0.43 6.69 -2.76 -0.02 0.41 16 19 C -0.03 -0.80 4.97 -104.62 -0.52 -1.32 16 20 C -0.10 -2.24 9.36 -39.58 -0.37 -2.61 16 21 C -0.13 -2.48 10.05 -39.58 -0.40 -2.88 16 22 C -0.15 -2.72 10.05 -39.58 -0.40 -3.12 16 23 C -0.13 -2.43 10.05 -39.58 -0.40 -2.83 16 24 C -0.12 -2.70 9.60 -39.58 -0.38 -3.08 16 25 H 0.27 7.58 5.43 -40.82 -0.22 7.36 16 26 H 0.05 1.06 6.52 -51.93 -0.34 0.73 16 27 H 0.03 0.63 8.08 -51.93 -0.42 0.21 16 28 H 0.04 0.54 7.81 -51.93 -0.41 0.13 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.10 1.89 7.56 -51.93 -0.39 1.50 16 31 H 0.04 0.57 8.01 -51.93 -0.42 0.15 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.04 0.45 7.57 -51.93 -0.39 0.05 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.12 2.66 7.71 -52.49 -0.40 2.26 16 39 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.11 2.61 7.04 -52.49 -0.37 2.24 16 LS Contribution 338.90 15.07 5.11 5.11 Total: -1.00 -29.55 338.90 -10.57 -40.12 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.68 Total: 4.97 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: -3.12 Total: -26.16 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: -0.48 Total: -34.61 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.32 Total: -9.07 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.08 Total: 19.64 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.55 -10.57 -40.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206309307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.013 kcal (2) G-P(sol) polarization free energy of solvation -29.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds