Wall clock time and date at job start Mon Mar 30 2020 01:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48504 * 109.47237 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47432 * 120.00082 * 3 2 1 6 6 H 1.48503 * 109.47036 * 240.00090 * 3 2 1 7 7 C 1.37877 * 120.00278 * 180.27456 * 2 1 3 8 8 H 1.07995 * 119.99942 * 183.01604 * 7 2 1 9 9 C 1.50692 * 119.99788 * 3.01423 * 7 2 1 10 10 H 1.09000 * 109.47365 * 332.33350 * 9 7 2 11 11 O 1.42898 * 109.47224 * 212.33406 * 9 7 2 12 12 C 1.42906 * 114.00256 * 90.00218 * 11 9 7 13 13 C 1.52995 * 109.47071 * 180.02562 * 12 11 9 14 14 N 1.46903 * 109.47079 * 65.00444 * 13 12 11 15 15 C 1.48529 * 111.00427 * 52.59951 * 14 13 12 16 16 C 1.54927 * 103.23004 * 159.72235 * 15 14 13 17 17 C 1.54596 * 102.92323 * 322.58677 * 16 15 14 18 18 C 1.47900 * 111.00130 * 169.99653 * 14 13 12 19 19 C 1.50706 * 109.47025 * 92.33859 * 9 7 2 20 20 C 1.38234 * 120.00206 * 82.40639 * 19 9 7 21 21 C 1.38238 * 119.99713 * 179.78974 * 20 19 9 22 22 C 1.38237 * 120.00049 * 0.43821 * 21 20 19 23 23 C 1.38231 * 120.00075 * 359.81603 * 22 21 20 24 24 C 1.38232 * 119.99639 * 262.67865 * 19 9 7 25 25 H 0.96998 * 119.99713 * 174.81290 * 1 2 3 26 26 H 1.09001 * 109.46427 * 300.00389 * 12 11 9 27 27 H 1.08993 * 109.46406 * 59.99813 * 12 11 9 28 28 H 1.09001 * 109.46779 * 184.99410 * 13 12 11 29 29 H 1.08990 * 109.47570 * 304.99916 * 13 12 11 30 30 H 1.09007 * 110.66817 * 278.15900 * 15 14 13 31 31 H 1.09006 * 110.66758 * 41.28448 * 15 14 13 32 32 H 1.09000 * 110.72868 * 204.22987 * 16 15 14 33 33 H 1.09004 * 110.72852 * 80.94354 * 16 15 14 34 34 H 1.09008 * 110.30805 * 263.04467 * 17 16 15 35 35 H 1.09003 * 110.39680 * 140.91819 * 17 16 15 36 36 H 1.09000 * 109.91805 * 333.50621 * 18 14 13 37 37 H 1.08999 * 109.91787 * 94.59723 * 18 14 13 38 38 H 1.07994 * 119.99894 * 359.97438 * 20 19 9 39 39 H 1.07995 * 119.99701 * 180.27323 * 21 20 19 40 40 H 1.07998 * 119.99441 * 179.83385 * 22 21 20 41 41 H 1.07995 * 120.00014 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.00131 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6966 1.2124 6 1 3.1028 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0057 8 1 3.0834 -1.1948 0.0435 9 6 1.2527 -2.4978 -0.0806 10 1 0.2620 -2.3715 0.3560 11 8 1.9674 -3.5020 0.6424 12 6 1.6036 -3.5954 2.0212 13 6 2.4274 -4.6960 2.6926 14 7 3.8465 -4.3160 2.6901 15 6 4.0362 -2.9624 3.2712 16 6 5.5334 -2.9540 3.6692 17 6 5.7643 -4.3959 4.1769 18 6 4.6422 -5.2327 3.5351 19 6 1.1169 -2.9173 -1.5217 20 6 2.1572 -3.5750 -2.1511 21 6 2.0308 -3.9636 -3.4717 22 6 0.8677 -3.6865 -4.1655 23 6 -0.1705 -3.0242 -3.5376 24 6 -0.0458 -2.6394 -2.2157 25 1 -0.4849 -0.8366 -0.0759 26 1 1.7999 -2.6432 2.5140 27 1 0.5432 -3.8344 2.1017 28 1 2.0886 -4.8278 3.7202 29 1 2.3004 -5.6300 2.1455 30 1 3.8315 -2.1922 2.5274 31 1 3.4040 -2.8285 4.1491 32 1 5.7173 -2.2312 4.4641 33 1 6.1617 -2.7448 2.8033 34 1 5.6880 -4.4310 5.2638 35 1 6.7397 -4.7605 3.8548 36 1 4.0105 -5.6644 4.3115 37 1 5.0705 -6.0254 2.9218 38 1 3.0674 -3.7878 -1.6103 39 1 2.8419 -4.4813 -3.9622 40 1 0.7702 -3.9878 -5.1980 41 1 -1.0790 -2.8073 -4.0798 42 1 -0.8570 -2.1220 -1.7251 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206309307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:44 Heat of formation + Delta-G solvation = -39.325332 kcal Electronic energy + Delta-G solvation = -21640.453262 eV Core-core repulsion = 18584.274219 eV Total energy + Delta-G solvation = -3056.179043 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.35445 -39.85319 -38.16804 -35.31299 -33.62451 -32.10277 -31.64847 -29.91099 -28.94455 -27.81087 -25.06408 -23.98157 -23.20560 -22.07842 -21.69237 -21.41169 -19.21450 -17.82049 -17.32523 -17.14309 -16.90596 -16.18664 -15.77161 -15.57327 -15.46320 -15.08841 -14.81499 -14.55590 -14.14819 -14.05832 -13.77357 -13.65864 -13.34133 -13.00036 -12.74316 -12.54618 -12.39946 -12.22511 -12.01392 -12.00215 -11.91896 -11.80061 -11.45746 -11.41432 -11.39387 -10.63844 -10.14115 -9.71084 -9.38822 -9.28370 -8.65023 -6.41579 0.60386 0.64607 1.47810 1.55120 1.74751 2.48656 2.88416 3.02986 3.16760 3.18512 3.73543 3.78994 4.06134 4.11163 4.19453 4.22879 4.23422 4.31896 4.33763 4.41311 4.46988 4.48657 4.63870 4.70876 4.74419 4.85047 4.90269 4.93624 4.97410 5.01916 5.07887 5.21233 5.24243 5.29783 5.31924 5.67210 5.72634 5.83629 5.94143 5.97596 6.03181 6.14474 6.25977 6.50674 6.70241 7.38719 8.67800 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013599 B = 0.006380 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.527575 B = 4387.391451 C = 5671.325793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.017 4.017 3 Si 1.106 2.894 4 H -0.279 1.279 5 H -0.269 1.269 6 H -0.276 1.276 7 C -0.603 4.603 8 H 0.042 0.958 9 C 0.232 3.768 10 H 0.003 0.997 11 O -0.385 6.385 12 C 0.071 3.929 13 C 0.063 3.937 14 N -0.528 5.528 15 C 0.034 3.966 16 C -0.120 4.120 17 C -0.121 4.121 18 C 0.031 3.969 19 C -0.066 4.066 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.137 4.137 23 C -0.123 4.123 24 C -0.143 4.143 25 H 0.260 0.740 26 H 0.030 0.970 27 H 0.035 0.965 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.145 0.855 40 H 0.154 0.846 41 H 0.141 0.859 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.621 -9.163 3.447 11.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.217 4.217 3 Si 0.928 3.072 4 H -0.204 1.204 5 H -0.194 1.194 6 H -0.201 1.201 7 C -0.641 4.641 8 H 0.060 0.940 9 C 0.175 3.825 10 H 0.021 0.979 11 O -0.305 6.305 12 C -0.007 4.007 13 C -0.065 4.065 14 N -0.253 5.253 15 C -0.093 4.093 16 C -0.158 4.158 17 C -0.159 4.159 18 C -0.096 4.096 19 C -0.066 4.066 20 C -0.138 4.138 21 C -0.141 4.141 22 C -0.154 4.154 23 C -0.141 4.141 24 C -0.162 4.162 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.163 0.837 40 H 0.172 0.828 41 H 0.159 0.841 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.717 -7.689 2.899 10.613 hybrid contribution -0.777 -1.142 0.968 1.686 sum 5.940 -8.831 3.867 11.323 Atomic orbital electron populations 1.70944 1.07492 1.30337 1.47481 1.27120 0.96544 1.05779 0.92244 0.83075 0.74390 0.71825 0.77889 1.20438 1.19429 1.20108 1.22394 0.94455 0.92441 1.54774 0.93965 1.18641 0.91017 0.86466 0.86328 0.97937 1.87771 1.65090 1.57197 1.20449 1.22412 0.96503 0.97891 0.83865 1.22234 0.87941 0.97656 0.98689 1.64696 1.08154 1.02572 1.49869 1.23157 0.97502 0.91700 0.96979 1.22461 0.94286 0.97955 1.01126 1.22374 0.98908 0.93909 1.00680 1.22983 0.95464 0.96006 0.95145 1.20392 0.93896 0.95032 0.97312 1.20927 0.98116 0.99194 0.95580 1.21413 0.98908 1.00227 0.93552 1.21364 0.93191 0.99980 1.00905 1.21312 1.00273 0.98880 0.93659 1.20981 0.97182 1.01642 0.96365 0.92924 0.95177 0.94671 0.91751 0.90036 0.92970 0.93893 0.89609 0.91802 0.89871 0.89881 0.92930 0.90291 0.87601 0.83676 0.82810 0.84126 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.43 13.62 21.45 0.29 -55.14 16 2 C -0.02 -0.99 5.46 84.65 0.46 -0.52 16 3 Si 1.11 50.96 29.90 68.60 2.05 53.01 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.60 -34.78 8.62 25.60 0.22 -34.56 16 8 H 0.04 2.52 7.81 -2.91 -0.02 2.50 16 9 C 0.23 12.43 2.22 29.10 0.06 12.49 16 10 H 0.00 0.17 5.89 -2.39 -0.01 0.15 16 11 O -0.39 -19.02 9.16 -148.98 -1.36 -20.39 16 12 C 0.07 2.95 5.56 71.98 0.40 3.35 16 13 C 0.06 2.06 5.41 86.30 0.47 2.53 16 14 N -0.53 -17.39 5.34 -883.06 -4.72 -22.11 16 15 C 0.03 1.14 5.08 86.65 0.44 1.58 16 16 C -0.12 -3.06 7.06 31.80 0.22 -2.84 16 17 C -0.12 -2.46 6.93 31.47 0.22 -2.25 16 18 C 0.03 0.76 6.69 86.45 0.58 1.34 16 19 C -0.07 -3.24 4.97 -19.86 -0.10 -3.34 16 20 C -0.12 -5.32 9.36 22.27 0.21 -5.11 16 21 C -0.12 -4.35 10.05 22.27 0.22 -4.13 16 22 C -0.14 -4.42 10.05 22.27 0.22 -4.19 16 23 C -0.12 -4.52 10.05 22.27 0.22 -4.29 16 24 C -0.14 -6.55 9.60 22.27 0.21 -6.34 16 25 H 0.26 15.62 5.43 -92.71 -0.50 15.12 16 26 H 0.03 1.37 6.52 -2.39 -0.02 1.35 16 27 H 0.04 1.43 8.08 -2.39 -0.02 1.41 16 28 H 0.06 1.76 7.81 -2.39 -0.02 1.74 16 29 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.05 2.17 7.56 -2.38 -0.02 2.15 16 31 H 0.04 1.33 8.01 -2.38 -0.02 1.31 16 32 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.08 1.37 8.14 -2.38 -0.02 1.36 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.05 1.12 7.57 -2.39 -0.02 1.10 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.11 4.87 7.71 -2.91 -0.02 4.85 16 39 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 40 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 41 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 42 H 0.10 4.65 7.04 -2.91 -0.02 4.63 16 Total: -1.00 -67.85 338.90 1.57 -66.28 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 1.24 Total: 24.61 kcal Atomic # 6 Polarization: -50.34 SS G_CDS: 4.07 Total: -46.27 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -4.43 Total: -77.25 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -1.36 Total: -20.39 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 2.05 Total: 53.01 kcal Total: -67.85 1.57 -66.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206309307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.954 kcal (2) G-P(sol) polarization free energy of solvation -67.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds