Wall clock time and date at job start Mon Mar 30 2020 02:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38235 * 120.00223 * 2 1 4 4 C 1.38234 * 120.00120 * 179.97438 * 3 2 1 5 5 C 1.38240 * 119.99985 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99825 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46748 * 90.00277 * 6 5 4 8 8 O 1.42906 * 109.46646 * 180.02562 * 7 6 5 9 9 C 1.42903 * 113.99676 * 180.02562 * 8 7 6 10 10 C 1.53514 * 114.17081 * 149.99722 * 9 8 7 11 11 N 1.47483 * 87.92777 * 87.61994 * 10 9 8 12 12 C 1.46903 * 110.99717 * 138.70421 * 11 10 9 13 13 C 1.50694 * 109.47066 * 169.99804 * 12 11 10 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.47480 * 87.83900 * 27.00973 * 11 10 9 22 22 C 1.38230 * 119.99974 * 0.25543 * 5 4 3 23 23 C 1.38238 * 119.99876 * 179.97438 * 2 1 3 24 24 H 1.09006 * 109.46443 * 89.99869 * 1 2 3 25 25 H 1.08991 * 109.47312 * 209.99467 * 1 2 3 26 26 H 1.08998 * 109.47428 * 330.00091 * 1 2 3 27 27 H 1.08000 * 119.99945 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.00015 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.47253 * 330.00061 * 6 5 4 30 30 H 1.08994 * 109.46969 * 210.00072 * 6 5 4 31 31 H 1.09000 * 109.47420 * 59.99886 * 7 6 5 32 32 H 1.08994 * 109.47218 * 299.99642 * 7 6 5 33 33 H 1.08997 * 113.25538 * 17.04389 * 9 8 7 34 34 H 1.09000 * 113.47331 * 332.85672 * 10 9 8 35 35 H 1.08997 * 113.47627 * 202.38796 * 10 9 8 36 36 H 1.09007 * 109.47052 * 49.99488 * 12 11 10 37 37 H 1.09003 * 109.46808 * 290.00181 * 12 11 10 38 38 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 39 39 H 1.09004 * 113.47132 * 87.75237 * 21 11 10 40 40 H 1.09000 * 113.47538 * 218.21976 * 21 11 10 41 41 H 1.07997 * 119.99954 * 179.73152 * 22 5 4 42 42 H 1.08002 * 120.00404 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7787 -0.0001 0.0005 7 6 6.2887 -0.0002 1.4431 8 8 7.7177 0.0005 1.4431 9 6 8.2989 -0.0001 2.7486 10 6 9.6629 -0.6999 2.8291 11 7 10.2848 0.5876 2.4678 12 6 11.4983 0.8269 3.2604 13 6 12.2366 2.0160 2.7021 14 1 11.8440 2.5413 1.8440 15 6 13.4140 2.4328 3.2861 16 7 13.8924 1.7929 4.3308 17 14 14.3296 3.9064 2.5936 18 1 15.2937 3.4495 1.5606 19 1 13.3591 4.8496 1.9822 20 1 15.0639 4.5916 3.6874 21 6 9.1180 1.2571 3.0724 22 6 3.5805 -1.1972 -0.0053 23 6 2.1981 -1.1972 0.0005 24 1 -0.3632 0.0000 -1.0278 25 1 -0.3633 -0.8899 0.5137 26 1 -0.3634 0.8900 0.5138 27 1 1.6582 2.1324 -0.0004 28 1 4.1205 2.1324 0.0001 29 1 6.1421 0.8899 -0.5133 30 1 6.1420 -0.8900 -0.5133 31 1 5.9253 -0.8901 1.9569 32 1 5.9254 0.8898 1.9569 33 1 7.5994 -0.2945 3.5309 34 1 9.7986 -1.4746 2.0744 35 1 9.9183 -1.0390 3.8330 36 1 12.1403 -0.0530 3.2165 37 1 11.2225 1.0240 4.2964 38 1 14.7210 2.0859 4.7414 39 1 9.2282 1.4402 4.1413 40 1 8.7922 2.1410 2.5240 41 1 4.1205 -2.1325 -0.0097 42 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206416573.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:46 Heat of formation + Delta-G solvation = 6.161500 kcal Electronic energy + Delta-G solvation = -19944.823557 eV Core-core repulsion = 16890.616971 eV Total energy + Delta-G solvation = -3054.206586 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.79351 -39.43379 -36.69903 -34.22494 -32.77921 -31.14576 -30.56860 -28.95988 -26.37443 -25.36780 -24.94034 -22.94356 -22.90053 -21.65756 -20.74226 -19.36749 -16.67594 -16.36144 -16.09486 -15.94397 -15.35936 -15.15780 -15.05020 -14.47763 -14.06884 -13.86395 -13.63632 -13.43637 -13.39711 -12.83028 -12.72791 -12.30293 -12.26451 -11.94562 -11.71113 -11.40170 -11.26850 -11.19351 -10.97422 -10.92623 -10.61995 -10.44911 -10.17333 -9.60744 -9.21445 -9.16123 -9.08600 -8.71203 -8.39085 -7.74952 -5.99989 -4.00507 1.07765 1.18351 3.35122 3.40314 3.43054 3.45465 3.78285 4.46374 4.55566 4.58002 4.79170 4.81755 4.84775 4.94436 4.97974 5.16165 5.25076 5.27246 5.32201 5.34715 5.35843 5.40549 5.45478 5.51286 5.72630 5.77235 5.90167 5.91851 6.00696 6.06616 6.18373 6.22317 6.30253 6.35360 6.45334 6.45965 6.73067 6.79456 7.21105 7.52345 7.71654 7.92338 8.16853 8.52427 9.07526 9.63302 11.11189 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.039085 B = 0.002522 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.217335 B =11101.149070 C =11506.589715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.120 4.120 4 C -0.110 4.110 5 C -0.083 4.083 6 C -0.080 4.080 7 C 0.067 3.933 8 O -0.350 6.350 9 C 0.056 3.944 10 C -0.007 4.007 11 N -0.456 5.456 12 C 0.156 3.844 13 C -0.501 4.501 14 H 0.063 0.937 15 C 0.052 3.948 16 N -0.902 5.902 17 Si 0.900 3.100 18 H -0.280 1.280 19 H -0.273 1.273 20 H -0.287 1.287 21 C -0.008 4.008 22 C -0.111 4.111 23 C -0.120 4.120 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.028 0.972 37 H 0.002 0.998 38 H 0.261 0.739 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.123 0.877 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.993 -5.422 -6.303 27.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.138 4.138 4 C -0.128 4.128 5 C -0.083 4.083 6 C -0.117 4.117 7 C -0.010 4.010 8 O -0.269 6.269 9 C -0.003 4.003 10 C -0.137 4.137 11 N -0.179 5.179 12 C 0.029 3.971 13 C -0.540 4.540 14 H 0.082 0.918 15 C -0.149 4.149 16 N -0.542 5.542 17 Si 0.728 3.272 18 H -0.206 1.206 19 H -0.198 1.198 20 H -0.213 1.213 21 C -0.138 4.138 22 C -0.129 4.129 23 C -0.138 4.138 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.139 0.861 28 H 0.142 0.858 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.020 0.980 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.141 0.859 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -25.486 -5.264 -7.032 26.957 hybrid contribution 0.435 0.647 0.912 1.199 sum -25.051 -4.617 -6.121 26.198 Atomic orbital electron populations 1.20784 0.91333 1.02709 1.02235 1.19932 0.96028 0.93305 1.00104 1.21031 0.94163 0.97518 1.01066 1.21124 0.94145 0.97833 0.99703 1.19778 0.95166 0.93270 1.00072 1.20473 0.90103 1.04489 0.96637 1.22455 0.82062 1.00047 0.96398 1.87965 1.18010 1.94467 1.26435 1.23299 0.93928 0.98442 0.84613 1.24035 0.92438 0.96811 1.00372 1.69032 1.02121 1.01355 1.45349 1.20299 0.87738 0.97746 0.91272 1.21121 1.06327 1.12521 1.14023 0.91847 1.25022 0.97410 0.97358 0.95091 1.69962 1.21388 1.40827 1.21998 0.86464 0.79762 0.82520 0.78480 1.20606 1.19832 1.21337 1.24221 0.93004 0.97782 0.98771 1.21094 0.94128 0.97727 0.99958 1.21020 0.94148 0.97484 1.01195 0.91270 0.91624 0.91602 0.86119 0.85788 0.89892 0.90064 0.93566 0.93401 0.91187 0.90125 0.91246 0.95351 0.97999 0.92983 0.91282 0.90316 0.85901 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.01 36.00 0.36 -0.31 16 2 C -0.09 -0.79 5.88 -104.63 -0.62 -1.41 16 3 C -0.12 -1.06 9.70 -39.58 -0.38 -1.44 16 4 C -0.11 -1.07 9.70 -39.58 -0.38 -1.45 16 5 C -0.08 -0.84 5.13 -104.62 -0.54 -1.38 16 6 C -0.08 -0.87 5.72 -27.88 -0.16 -1.03 16 7 C 0.07 0.84 5.76 37.16 0.21 1.05 16 8 O -0.35 -5.78 10.39 -35.23 -0.37 -6.14 16 9 C 0.06 0.92 4.66 -26.20 -0.12 0.80 16 10 C -0.01 -0.13 7.52 -7.53 -0.06 -0.19 16 11 N -0.46 -10.59 6.32 -246.08 -1.55 -12.15 16 12 C 0.16 4.22 4.57 -4.98 -0.02 4.20 16 13 C -0.50 -14.82 9.39 -34.44 -0.32 -15.14 16 14 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 15 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 16 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 17 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 C -0.01 -0.16 7.55 -7.54 -0.06 -0.22 16 22 C -0.11 -1.04 9.70 -39.58 -0.38 -1.42 16 23 C -0.12 -1.03 9.70 -39.58 -0.38 -1.42 16 24 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 26 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 27 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 28 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 30 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.96 7.88 -51.93 -0.41 0.55 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.07 1.23 7.91 -51.93 -0.41 0.82 16 36 H 0.03 0.82 8.08 -51.92 -0.42 0.40 16 37 H 0.00 0.06 7.30 -51.93 -0.38 -0.32 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.07 1.33 7.42 -51.93 -0.39 0.95 16 40 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 LS Contribution 351.30 15.07 5.29 5.29 Total: -1.00 -32.54 351.30 -10.90 -43.44 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -7.03 Total: -3.16 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -2.95 Total: -17.94 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: -0.82 Total: -38.80 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.37 Total: -6.14 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.54 -10.90 -43.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206416573.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.597 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds