Wall clock time and date at job start Mon Mar 30 2020 02:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38235 * 120.00223 * 2 1 4 4 C 1.38234 * 120.00120 * 179.97438 * 3 2 1 5 5 C 1.38240 * 119.99985 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99825 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46748 * 90.00277 * 6 5 4 8 8 O 1.42906 * 109.46646 * 180.02562 * 7 6 5 9 9 C 1.42903 * 113.99676 * 180.02562 * 8 7 6 10 10 C 1.53514 * 114.17081 * 149.99722 * 9 8 7 11 11 N 1.47483 * 87.92777 * 87.61994 * 10 9 8 12 12 C 1.46903 * 110.99717 * 138.70421 * 11 10 9 13 13 C 1.50694 * 109.47066 * 169.99804 * 12 11 10 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.47480 * 87.83900 * 27.00973 * 11 10 9 22 22 C 1.38230 * 119.99974 * 0.25543 * 5 4 3 23 23 C 1.38238 * 119.99876 * 179.97438 * 2 1 3 24 24 H 1.09006 * 109.46443 * 89.99869 * 1 2 3 25 25 H 1.08991 * 109.47312 * 209.99467 * 1 2 3 26 26 H 1.08998 * 109.47428 * 330.00091 * 1 2 3 27 27 H 1.08000 * 119.99945 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.00015 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.47253 * 330.00061 * 6 5 4 30 30 H 1.08994 * 109.46969 * 210.00072 * 6 5 4 31 31 H 1.09000 * 109.47420 * 59.99886 * 7 6 5 32 32 H 1.08994 * 109.47218 * 299.99642 * 7 6 5 33 33 H 1.08997 * 113.25538 * 17.04389 * 9 8 7 34 34 H 1.09000 * 113.47331 * 332.85672 * 10 9 8 35 35 H 1.08997 * 113.47627 * 202.38796 * 10 9 8 36 36 H 1.09007 * 109.47052 * 49.99488 * 12 11 10 37 37 H 1.09003 * 109.46808 * 290.00181 * 12 11 10 38 38 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 39 39 H 1.09004 * 113.47132 * 87.75237 * 21 11 10 40 40 H 1.09000 * 113.47538 * 218.21976 * 21 11 10 41 41 H 1.07997 * 119.99954 * 179.73152 * 22 5 4 42 42 H 1.08002 * 120.00404 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7787 -0.0001 0.0005 7 6 6.2887 -0.0002 1.4431 8 8 7.7177 0.0005 1.4431 9 6 8.2989 -0.0001 2.7486 10 6 9.6629 -0.6999 2.8291 11 7 10.2848 0.5876 2.4678 12 6 11.4983 0.8269 3.2604 13 6 12.2366 2.0160 2.7021 14 1 11.8440 2.5413 1.8440 15 6 13.4140 2.4328 3.2861 16 7 13.8924 1.7929 4.3308 17 14 14.3296 3.9064 2.5936 18 1 15.2937 3.4495 1.5606 19 1 13.3591 4.8496 1.9822 20 1 15.0639 4.5916 3.6874 21 6 9.1180 1.2571 3.0724 22 6 3.5805 -1.1972 -0.0053 23 6 2.1981 -1.1972 0.0005 24 1 -0.3632 0.0000 -1.0278 25 1 -0.3633 -0.8899 0.5137 26 1 -0.3634 0.8900 0.5138 27 1 1.6582 2.1324 -0.0004 28 1 4.1205 2.1324 0.0001 29 1 6.1421 0.8899 -0.5133 30 1 6.1420 -0.8900 -0.5133 31 1 5.9253 -0.8901 1.9569 32 1 5.9254 0.8898 1.9569 33 1 7.5994 -0.2945 3.5309 34 1 9.7986 -1.4746 2.0744 35 1 9.9183 -1.0390 3.8330 36 1 12.1403 -0.0530 3.2165 37 1 11.2225 1.0240 4.2964 38 1 14.7210 2.0859 4.7414 39 1 9.2282 1.4402 4.1413 40 1 8.7922 2.1410 2.5240 41 1 4.1205 -2.1325 -0.0097 42 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206416573.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:45 Heat of formation + Delta-G solvation = -14.237544 kcal Electronic energy + Delta-G solvation = -19945.708126 eV Core-core repulsion = 16890.616971 eV Total energy + Delta-G solvation = -3055.091155 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.08143 -40.35345 -37.96745 -35.20668 -34.78619 -31.79862 -31.58448 -30.63714 -27.38415 -26.94455 -26.60117 -23.76346 -23.60192 -23.58672 -21.48542 -20.82873 -18.58936 -17.81060 -17.16733 -16.89359 -16.70311 -16.24903 -16.10718 -15.89630 -15.36731 -15.08038 -14.94117 -14.47289 -14.27142 -13.99912 -13.78189 -13.53601 -13.34760 -13.24475 -12.99279 -12.81545 -12.67470 -12.33412 -12.32309 -12.05763 -11.94464 -11.91085 -11.69076 -11.46613 -11.25159 -10.63515 -10.40579 -9.81176 -9.55865 -9.38853 -8.24482 -6.34690 0.39460 0.51430 1.37947 1.40150 1.51702 2.38133 2.47532 2.88458 3.07031 3.44166 3.47661 3.89414 3.93111 3.99289 4.14873 4.15760 4.17825 4.27284 4.43820 4.49142 4.50846 4.52117 4.61891 4.66362 4.71263 4.83546 4.84499 4.86514 4.95402 4.97037 4.99307 5.04135 5.11858 5.23265 5.33236 5.53100 5.57506 5.72528 5.74382 5.79361 6.08256 6.14609 6.32947 6.49272 6.79474 7.34683 8.86532 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.039085 B = 0.002522 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.217335 B =11101.149070 C =11506.589715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.129 4.129 4 C -0.123 4.123 5 C -0.096 4.096 6 C -0.073 4.073 7 C 0.065 3.935 8 O -0.373 6.373 9 C 0.083 3.917 10 C -0.010 4.010 11 N -0.487 5.487 12 C 0.172 3.828 13 C -0.528 4.528 14 H 0.053 0.947 15 C 0.000 4.000 16 N -0.933 5.933 17 Si 0.972 3.028 18 H -0.272 1.272 19 H -0.267 1.267 20 H -0.277 1.277 21 C -0.014 4.014 22 C -0.120 4.120 23 C -0.128 4.128 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.136 0.864 28 H 0.127 0.873 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.111 0.889 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.000 1.000 37 H -0.015 1.015 38 H 0.266 0.734 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.133 0.867 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.777 -5.310 -6.617 29.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.141 4.141 5 C -0.096 4.096 6 C -0.110 4.110 7 C -0.011 4.011 8 O -0.292 6.292 9 C 0.024 3.976 10 C -0.139 4.139 11 N -0.209 5.209 12 C 0.045 3.955 13 C -0.566 4.566 14 H 0.072 0.928 15 C -0.198 4.198 16 N -0.573 5.573 17 Si 0.796 3.204 18 H -0.198 1.198 19 H -0.192 1.192 20 H -0.202 1.202 21 C -0.143 4.143 22 C -0.138 4.138 23 C -0.145 4.145 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.154 0.846 28 H 0.145 0.855 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.019 0.981 37 H 0.002 0.998 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.151 0.849 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -27.293 -5.162 -7.353 28.733 hybrid contribution 0.896 0.571 0.984 1.448 sum -26.397 -4.591 -6.369 27.540 Atomic orbital electron populations 1.20831 0.89534 1.03584 1.03008 1.20299 0.97489 0.93099 0.99040 1.21287 0.93962 0.98570 1.00881 1.21280 0.94828 0.97914 1.00111 1.19740 0.94499 0.93914 1.01487 1.20387 0.90894 1.04029 0.95735 1.22658 0.79840 1.01027 0.97574 1.87942 1.20493 1.94319 1.26456 1.23062 0.93631 0.95044 0.85833 1.24118 0.93573 0.95240 1.00964 1.68950 1.01880 1.04686 1.45416 1.19966 0.89081 0.95756 0.90719 1.21413 1.07371 1.13641 1.14163 0.92827 1.25950 0.98140 1.00404 0.95259 1.70069 1.21901 1.42333 1.22987 0.85348 0.78360 0.78640 0.78057 1.19762 1.19183 1.20167 1.24286 0.92417 0.99033 0.98589 1.21287 0.94743 0.97840 0.99881 1.21310 0.94017 0.98495 1.00723 0.90447 0.90669 0.90870 0.84594 0.85548 0.90821 0.90084 0.91900 0.92922 0.87174 0.89793 0.90274 0.98143 0.99772 0.92521 0.91080 0.90966 0.84927 0.84275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 71.23 0.71 -0.35 16 2 C -0.10 -1.48 5.88 -19.87 -0.12 -1.60 16 3 C -0.13 -2.09 9.70 22.27 0.22 -1.87 16 4 C -0.12 -2.29 9.70 22.27 0.22 -2.07 16 5 C -0.10 -1.86 5.13 -19.86 -0.10 -1.96 16 6 C -0.07 -1.55 5.72 29.85 0.17 -1.38 16 7 C 0.07 1.51 5.76 71.98 0.41 1.93 16 8 O -0.37 -11.82 10.39 -148.98 -1.55 -13.37 16 9 C 0.08 2.60 4.66 30.94 0.14 2.75 16 10 C -0.01 -0.36 7.52 83.58 0.63 0.27 16 11 N -0.49 -22.98 6.32 -932.85 -5.89 -28.87 16 12 C 0.17 9.62 4.57 85.55 0.39 10.01 16 13 C -0.53 -31.90 9.39 25.60 0.24 -31.66 16 14 H 0.05 3.26 7.81 -2.91 -0.02 3.24 16 15 C 0.00 0.03 5.46 84.66 0.46 0.49 16 16 N -0.93 -57.36 13.29 21.45 0.28 -57.07 16 17 Si 0.97 45.96 29.54 68.60 2.03 47.98 16 18 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 C -0.01 -0.54 7.55 83.58 0.63 0.09 16 22 C -0.12 -2.06 9.70 22.27 0.22 -1.85 16 23 C -0.13 -1.94 9.70 22.27 0.22 -1.73 16 24 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 25 H 0.07 0.57 8.08 -2.39 -0.02 0.55 16 26 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 27 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 28 H 0.13 2.16 8.06 -2.91 -0.02 2.13 16 29 H 0.07 1.66 8.09 -2.39 -0.02 1.64 16 30 H 0.08 1.68 8.08 -2.39 -0.02 1.67 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.11 2.64 7.88 -2.39 -0.02 2.62 16 34 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.08 2.77 7.91 -2.39 -0.02 2.75 16 36 H 0.00 0.03 8.08 -2.38 -0.02 0.01 16 37 H -0.02 -0.90 7.30 -2.39 -0.02 -0.91 16 38 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 39 H 0.07 2.74 7.42 -2.39 -0.02 2.73 16 40 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 41 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 42 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -70.34 351.30 0.28 -70.06 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.97 Total: 10.21 kcal Atomic # 6 Polarization: -33.37 SS G_CDS: 4.44 Total: -28.93 kcal Atomic # 7 Polarization: -80.34 SS G_CDS: -5.61 Total: -85.94 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -1.55 Total: -13.37 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -70.34 0.28 -70.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206416573.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.821 kcal (2) G-P(sol) polarization free energy of solvation -70.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds