Wall clock time and date at job start Mon Mar 30 2020 02:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38229 * 120.00084 * 2 1 4 4 C 1.38235 * 120.00011 * 180.02562 * 3 2 1 5 5 C 1.38241 * 120.00008 * 359.95071 * 4 3 2 6 6 C 1.50692 * 119.99969 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47377 * 89.99622 * 6 5 4 8 8 O 1.42902 * 109.47138 * 179.97438 * 7 6 5 9 9 C 1.42907 * 113.99938 * 180.02562 * 8 7 6 10 10 H 1.08995 * 110.64201 * 26.85726 * 9 8 7 11 11 C 1.55151 * 110.71895 * 149.99886 * 9 8 7 12 12 C 1.54914 * 101.58023 * 153.86196 * 11 9 8 13 13 N 1.47420 * 104.83159 * 322.99181 * 12 11 9 14 14 C 1.36945 * 125.64792 * 204.08975 * 13 12 11 15 15 H 1.07997 * 119.99756 * 180.02562 * 14 13 12 16 16 C 1.38805 * 119.99878 * 0.02562 * 14 13 12 17 17 N 1.31624 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47187 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47141 * 300.00154 * 18 16 14 21 21 H 1.48498 * 109.47018 * 60.00200 * 18 16 14 22 22 C 1.47020 * 108.70626 * 24.35323 * 13 12 11 23 23 C 1.38233 * 119.99674 * 0.27834 * 5 4 3 24 24 C 1.38235 * 119.99473 * 179.97438 * 2 1 3 25 25 H 1.09006 * 109.46702 * 90.00302 * 1 2 3 26 26 H 1.08996 * 109.47000 * 210.00498 * 1 2 3 27 27 H 1.09002 * 109.46947 * 330.00583 * 1 2 3 28 28 H 1.08005 * 120.00090 * 359.97060 * 3 2 1 29 29 H 1.07998 * 120.00006 * 179.97438 * 4 3 2 30 30 H 1.09008 * 109.46988 * 329.99670 * 6 5 4 31 31 H 1.09000 * 109.47000 * 209.99825 * 6 5 4 32 32 H 1.09008 * 109.47022 * 60.00069 * 7 6 5 33 33 H 1.08997 * 109.47666 * 299.99793 * 7 6 5 34 34 H 1.09002 * 111.00697 * 35.79090 * 11 9 8 35 35 H 1.08994 * 111.00548 * 271.93558 * 11 9 8 36 36 H 1.08999 * 110.37083 * 204.15142 * 12 11 9 37 37 H 1.08999 * 110.36305 * 81.82793 * 12 11 9 38 38 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.88406 * 118.12749 * 22 13 12 40 40 H 1.09001 * 109.88743 * 239.29401 * 22 13 12 41 41 H 1.07995 * 120.00032 * 179.73195 * 23 5 4 42 42 H 1.07995 * 120.00638 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2718 -0.0001 0.0000 6 6 5.7787 -0.0001 0.0000 7 6 6.2888 0.0005 1.4424 8 8 7.7178 -0.0001 1.4423 9 6 8.2991 -0.0001 2.7478 10 1 7.6239 -0.4605 3.4691 11 6 9.6701 -0.7263 2.7382 12 6 10.3877 -0.0518 3.9341 13 7 9.9580 1.3576 3.8859 14 6 10.6440 2.4195 4.4121 15 1 10.2427 3.4184 4.3246 16 6 11.8550 2.2121 5.0580 17 7 12.3442 0.9948 5.1643 18 14 12.7911 3.6609 5.7752 19 1 14.0442 3.1763 6.4078 20 1 13.1220 4.6214 4.6923 21 1 11.9509 4.3364 6.7965 22 6 8.6679 1.4335 3.1848 23 6 3.5806 -1.1972 -0.0048 24 6 2.1982 -1.1972 0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.6583 2.1325 -0.0005 29 1 4.1206 2.1324 -0.0010 30 1 6.1421 0.8897 -0.5143 31 1 6.1420 -0.8904 -0.5135 32 1 5.9254 -0.8893 1.9567 33 1 5.9256 0.8907 1.9559 34 1 10.2044 -0.5401 1.8065 35 1 9.5470 -1.7957 2.9091 36 1 11.4690 -0.1229 3.8169 37 1 10.0758 -0.5116 4.8718 38 1 13.1907 0.8500 5.6153 39 1 7.9040 1.8266 3.8556 40 1 8.7596 2.0744 2.3079 41 1 4.1205 -2.1325 -0.0088 42 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206416763.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:09 Heat of formation + Delta-G solvation = -8.388675 kcal Electronic energy + Delta-G solvation = -20321.756737 eV Core-core repulsion = 17266.919208 eV Total energy + Delta-G solvation = -3054.837529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.69121 -38.31226 -36.07169 -34.20758 -32.17604 -31.10084 -30.43672 -29.08255 -27.13493 -26.15597 -24.28870 -22.89920 -22.80789 -20.78231 -20.11956 -20.06329 -16.97758 -16.63519 -16.08367 -15.86531 -15.22729 -14.84737 -14.71902 -14.36210 -14.05971 -13.86077 -13.58859 -13.27604 -12.84552 -12.67091 -12.38517 -12.31649 -12.04602 -11.68479 -11.49211 -11.26690 -11.20630 -11.08374 -10.95567 -10.74717 -10.70192 -10.24622 -10.11957 -9.74345 -9.51230 -9.11644 -9.02842 -8.66538 -8.62715 -6.81293 -5.62970 -3.04881 1.12546 1.22931 3.42691 3.46217 3.47840 3.50603 3.98671 4.51975 4.59967 4.63315 4.84327 4.91000 4.93924 5.18893 5.26729 5.28862 5.31902 5.44961 5.48221 5.48909 5.52303 5.55490 5.57130 5.78772 5.79758 5.84842 5.92034 5.98505 6.05301 6.23989 6.38465 6.39683 6.50618 6.57583 6.62835 6.69720 6.76798 6.84112 7.51806 7.64470 7.68871 7.87767 8.38202 9.24093 9.84861 10.49619 11.41128 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037520 B = 0.002787 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.093343 B =10043.888350 C =10499.742170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.120 4.120 4 C -0.110 4.110 5 C -0.083 4.083 6 C -0.079 4.079 7 C 0.069 3.931 8 O -0.379 6.379 9 C 0.077 3.923 10 H 0.062 0.938 11 C -0.139 4.139 12 C 0.152 3.848 13 N -0.602 5.602 14 C -0.222 4.222 15 H 0.077 0.923 16 C -0.012 4.012 17 N -0.924 5.924 18 Si 0.916 3.084 19 H -0.290 1.290 20 H -0.285 1.285 21 H -0.286 1.286 22 C 0.118 3.882 23 C -0.111 4.111 24 C -0.120 4.120 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.111 0.889 37 H 0.013 0.987 38 H 0.253 0.747 39 H 0.019 0.981 40 H 0.033 0.967 41 H 0.123 0.877 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.671 -4.684 -10.946 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 C -0.138 4.138 4 C -0.128 4.128 5 C -0.083 4.083 6 C -0.117 4.117 7 C -0.008 4.008 8 O -0.298 6.298 9 C 0.019 3.981 10 H 0.080 0.920 11 C -0.178 4.178 12 C 0.027 3.973 13 N -0.329 5.329 14 C -0.350 4.350 15 H 0.095 0.905 16 C -0.208 4.208 17 N -0.573 5.573 18 Si 0.747 3.253 19 H -0.215 1.215 20 H -0.211 1.211 21 H -0.212 1.212 22 C -0.008 4.008 23 C -0.129 4.129 24 C -0.138 4.138 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.139 0.861 29 H 0.142 0.858 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.128 0.872 37 H 0.031 0.969 38 H 0.064 0.936 39 H 0.037 0.963 40 H 0.051 0.949 41 H 0.141 0.859 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.366 -4.639 -10.996 23.605 hybrid contribution 0.209 0.755 0.709 1.056 sum -20.157 -3.885 -10.287 22.961 Atomic orbital electron populations 1.20786 0.91342 1.02720 1.02189 1.19928 0.96017 0.93305 1.00163 1.21028 0.94160 0.97513 1.01061 1.21120 0.94150 0.97828 0.99708 1.19785 0.95220 0.93275 0.99983 1.20485 0.90139 1.04198 0.96850 1.22394 0.82299 1.00113 0.96037 1.87898 1.18166 1.95032 1.28687 1.23230 0.94896 0.96979 0.83014 0.92019 1.23164 0.94417 0.98226 1.01963 1.21960 1.01603 0.82424 0.91269 1.44392 1.18879 1.03900 1.65769 1.19049 1.00658 0.86759 1.28527 0.90511 1.24799 0.97961 0.96897 1.01106 1.69774 1.20799 1.18524 1.48185 0.86121 0.79140 0.81253 0.78803 1.21540 1.21121 1.21235 1.21680 0.89331 0.94444 0.95371 1.21089 0.94131 0.97718 0.99988 1.21014 0.94144 0.97476 1.01206 0.91302 0.91626 0.91602 0.86123 0.85805 0.90076 0.90204 0.93663 0.93420 0.91132 0.92067 0.87163 0.96911 0.93644 0.96265 0.94860 0.85923 0.86172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.01 36.01 0.36 -0.37 16 2 C -0.09 -0.85 5.88 -104.62 -0.62 -1.47 16 3 C -0.12 -1.13 9.70 -39.59 -0.38 -1.52 16 4 C -0.11 -1.15 9.70 -39.58 -0.38 -1.53 16 5 C -0.08 -0.90 5.13 -104.63 -0.54 -1.44 16 6 C -0.08 -0.93 5.71 -27.89 -0.16 -1.08 16 7 C 0.07 0.95 5.76 37.16 0.21 1.17 16 8 O -0.38 -6.67 10.08 -35.23 -0.35 -7.03 16 9 C 0.08 1.48 3.44 -24.89 -0.09 1.40 16 10 H 0.06 1.11 7.82 -51.93 -0.41 0.70 16 11 C -0.14 -2.84 6.81 -24.58 -0.17 -3.01 16 12 C 0.15 3.84 5.89 -2.53 -0.01 3.82 16 13 N -0.60 -16.20 3.39 -170.07 -0.58 -16.78 16 14 C -0.22 -6.39 10.27 -15.06 -0.15 -6.54 16 15 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 16 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 17 N -0.92 -27.41 10.09 55.49 0.56 -26.85 16 18 Si 0.92 22.42 29.55 -169.99 -5.02 17.40 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 C 0.12 2.67 7.03 -3.06 -0.02 2.65 16 23 C -0.11 -1.12 9.70 -39.58 -0.38 -1.51 16 24 C -0.12 -1.11 9.70 -39.58 -0.38 -1.50 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 27 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 28 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 29 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 30 H 0.08 0.94 8.09 -51.92 -0.42 0.52 16 31 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 32 H 0.05 0.59 8.11 -51.92 -0.42 0.17 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.11 3.08 5.87 -51.93 -0.30 2.78 16 37 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.03 0.77 8.05 -51.93 -0.42 0.35 16 41 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 344.09 15.07 5.19 5.19 Total: -1.00 -31.35 344.09 -10.03 -41.38 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -7.00 Total: -1.92 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -2.81 Total: -11.39 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: -0.02 Total: -43.63 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.35 Total: -7.03 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.35 -10.03 -41.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206416763.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.990 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds