Wall clock time and date at job start Mon Mar 30 2020 02:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38229 * 120.00084 * 2 1 4 4 C 1.38235 * 120.00011 * 180.02562 * 3 2 1 5 5 C 1.38241 * 120.00008 * 359.95071 * 4 3 2 6 6 C 1.50692 * 119.99969 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47377 * 89.99622 * 6 5 4 8 8 O 1.42902 * 109.47138 * 179.97438 * 7 6 5 9 9 C 1.42907 * 113.99938 * 180.02562 * 8 7 6 10 10 H 1.08995 * 110.64201 * 26.85726 * 9 8 7 11 11 C 1.55151 * 110.71895 * 149.99886 * 9 8 7 12 12 C 1.54914 * 101.58023 * 153.86196 * 11 9 8 13 13 N 1.47420 * 104.83159 * 322.99181 * 12 11 9 14 14 C 1.36945 * 125.64792 * 204.08975 * 13 12 11 15 15 H 1.07997 * 119.99756 * 180.02562 * 14 13 12 16 16 C 1.38805 * 119.99878 * 0.02562 * 14 13 12 17 17 N 1.31624 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47187 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47141 * 300.00154 * 18 16 14 21 21 H 1.48498 * 109.47018 * 60.00200 * 18 16 14 22 22 C 1.47020 * 108.70626 * 24.35323 * 13 12 11 23 23 C 1.38233 * 119.99674 * 0.27834 * 5 4 3 24 24 C 1.38235 * 119.99473 * 179.97438 * 2 1 3 25 25 H 1.09006 * 109.46702 * 90.00302 * 1 2 3 26 26 H 1.08996 * 109.47000 * 210.00498 * 1 2 3 27 27 H 1.09002 * 109.46947 * 330.00583 * 1 2 3 28 28 H 1.08005 * 120.00090 * 359.97060 * 3 2 1 29 29 H 1.07998 * 120.00006 * 179.97438 * 4 3 2 30 30 H 1.09008 * 109.46988 * 329.99670 * 6 5 4 31 31 H 1.09000 * 109.47000 * 209.99825 * 6 5 4 32 32 H 1.09008 * 109.47022 * 60.00069 * 7 6 5 33 33 H 1.08997 * 109.47666 * 299.99793 * 7 6 5 34 34 H 1.09002 * 111.00697 * 35.79090 * 11 9 8 35 35 H 1.08994 * 111.00548 * 271.93558 * 11 9 8 36 36 H 1.08999 * 110.37083 * 204.15142 * 12 11 9 37 37 H 1.08999 * 110.36305 * 81.82793 * 12 11 9 38 38 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.88406 * 118.12749 * 22 13 12 40 40 H 1.09001 * 109.88743 * 239.29401 * 22 13 12 41 41 H 1.07995 * 120.00032 * 179.73195 * 23 5 4 42 42 H 1.07995 * 120.00638 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2718 -0.0001 0.0000 6 6 5.7787 -0.0001 0.0000 7 6 6.2888 0.0005 1.4424 8 8 7.7178 -0.0001 1.4423 9 6 8.2991 -0.0001 2.7478 10 1 7.6239 -0.4605 3.4691 11 6 9.6701 -0.7263 2.7382 12 6 10.3877 -0.0518 3.9341 13 7 9.9580 1.3576 3.8859 14 6 10.6440 2.4195 4.4121 15 1 10.2427 3.4184 4.3246 16 6 11.8550 2.2121 5.0580 17 7 12.3442 0.9948 5.1643 18 14 12.7911 3.6609 5.7752 19 1 14.0442 3.1763 6.4078 20 1 13.1220 4.6214 4.6923 21 1 11.9509 4.3364 6.7965 22 6 8.6679 1.4335 3.1848 23 6 3.5806 -1.1972 -0.0048 24 6 2.1982 -1.1972 0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.6583 2.1325 -0.0005 29 1 4.1206 2.1324 -0.0010 30 1 6.1421 0.8897 -0.5143 31 1 6.1420 -0.8904 -0.5135 32 1 5.9254 -0.8893 1.9567 33 1 5.9256 0.8907 1.9559 34 1 10.2044 -0.5401 1.8065 35 1 9.5470 -1.7957 2.9091 36 1 11.4690 -0.1229 3.8169 37 1 10.0758 -0.5116 4.8718 38 1 13.1907 0.8500 5.6153 39 1 7.9040 1.8266 3.8556 40 1 8.7596 2.0744 2.3079 41 1 4.1205 -2.1325 -0.0088 42 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206416763.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:08 Heat of formation + Delta-G solvation = -24.631219 kcal Electronic energy + Delta-G solvation = -20322.461067 eV Core-core repulsion = 17266.919208 eV Total energy + Delta-G solvation = -3055.541858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.46777 -39.81891 -37.68211 -35.16471 -34.09802 -31.80642 -31.52970 -30.81509 -28.84680 -27.13474 -26.20715 -23.77009 -23.61012 -22.09998 -21.86791 -21.36678 -18.99299 -18.03140 -17.00235 -16.77080 -16.71796 -16.18221 -15.87517 -15.79834 -15.44666 -15.00195 -14.52951 -14.30444 -14.27149 -13.73842 -13.60484 -13.52867 -13.35253 -13.01013 -12.94575 -12.81315 -12.60803 -12.41397 -12.13130 -12.06216 -11.99280 -11.88619 -11.77552 -11.72212 -11.33139 -10.76725 -10.48586 -9.81918 -9.39589 -8.93376 -7.79742 -5.25495 0.38728 0.50704 1.45994 1.49967 1.56436 2.45088 2.58900 2.91298 3.30531 3.68458 3.81286 3.89265 3.93800 4.03084 4.14574 4.14824 4.16776 4.17399 4.35213 4.46976 4.49851 4.60985 4.63128 4.76196 4.82346 4.84827 4.88588 4.94962 4.97268 5.01919 5.03727 5.12902 5.22481 5.32495 5.42634 5.52292 5.58678 5.71668 5.73494 5.75941 6.13977 6.25620 6.33068 7.07563 7.73665 8.37552 9.22292 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037520 B = 0.002787 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.093343 B =10043.888350 C =10499.742170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.130 4.130 4 C -0.124 4.124 5 C -0.098 4.098 6 C -0.070 4.070 7 C 0.065 3.935 8 O -0.387 6.387 9 C 0.093 3.907 10 H 0.081 0.919 11 C -0.126 4.126 12 C 0.154 3.846 13 N -0.625 5.625 14 C -0.245 4.245 15 H 0.079 0.921 16 C -0.066 4.066 17 N -0.949 5.949 18 Si 0.985 3.015 19 H -0.290 1.290 20 H -0.277 1.277 21 H -0.277 1.277 22 C 0.114 3.886 23 C -0.120 4.120 24 C -0.128 4.128 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.136 0.864 29 H 0.126 0.874 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.079 0.921 37 H -0.004 1.004 38 H 0.250 0.750 39 H 0.025 0.975 40 H 0.026 0.974 41 H 0.134 0.866 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.462 -4.874 -11.419 25.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.148 4.148 4 C -0.142 4.142 5 C -0.098 4.098 6 C -0.108 4.108 7 C -0.012 4.012 8 O -0.306 6.306 9 C 0.035 3.965 10 H 0.099 0.901 11 C -0.164 4.164 12 C 0.029 3.971 13 N -0.353 5.353 14 C -0.374 4.374 15 H 0.097 0.903 16 C -0.259 4.259 17 N -0.598 5.598 18 Si 0.813 3.187 19 H -0.216 1.216 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.012 4.012 23 C -0.138 4.138 24 C -0.146 4.146 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.154 0.846 29 H 0.144 0.856 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.097 0.903 37 H 0.014 0.986 38 H 0.059 0.941 39 H 0.042 0.958 40 H 0.044 0.956 41 H 0.151 0.849 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -22.191 -4.828 -11.490 25.452 hybrid contribution 0.670 0.817 0.818 1.336 sum -21.521 -4.011 -10.672 24.355 Atomic orbital electron populations 1.20835 0.89486 1.03560 1.03052 1.20306 0.97523 0.93088 0.99023 1.21289 0.93958 0.98596 1.00909 1.21286 0.94867 0.97927 1.00119 1.19763 0.94628 0.93927 1.01488 1.20387 0.90843 1.04256 0.95291 1.22613 0.80170 1.00577 0.97795 1.87883 1.20453 1.94910 1.27398 1.22951 0.94838 0.94451 0.84304 0.90099 1.22983 0.94428 0.99703 0.99314 1.21757 1.00309 0.82429 0.92594 1.44705 1.20449 1.04104 1.66013 1.19430 1.01376 0.87651 1.28957 0.90290 1.25694 0.98829 0.99689 1.01682 1.70023 1.20848 1.20353 1.48617 0.85057 0.77488 0.78068 0.78123 1.21596 1.20266 1.20321 1.21834 0.87790 0.96837 0.94713 1.21297 0.94770 0.97851 0.99845 1.21315 0.94021 0.98512 1.00720 0.90325 0.90687 0.90923 0.84589 0.85583 0.90518 0.89680 0.92404 0.93665 0.91716 0.88927 0.90342 0.98592 0.94077 0.95755 0.95645 0.84859 0.84216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.01 71.24 0.71 -0.46 16 2 C -0.10 -1.61 5.88 -19.86 -0.12 -1.72 16 3 C -0.13 -2.27 9.70 22.27 0.22 -2.05 16 4 C -0.12 -2.47 9.70 22.27 0.22 -2.26 16 5 C -0.10 -2.02 5.13 -19.87 -0.10 -2.13 16 6 C -0.07 -1.56 5.71 29.84 0.17 -1.39 16 7 C 0.06 1.70 5.76 71.98 0.41 2.11 16 8 O -0.39 -13.05 10.08 -148.98 -1.50 -14.55 16 9 C 0.09 3.46 3.44 31.79 0.11 3.57 16 10 H 0.08 2.72 7.82 -2.39 -0.02 2.71 16 11 C -0.13 -5.02 6.81 31.99 0.22 -4.81 16 12 C 0.15 7.89 5.89 86.86 0.51 8.40 16 13 N -0.63 -34.11 3.39 -691.97 -2.35 -36.46 16 14 C -0.25 -14.34 10.27 84.03 0.86 -13.47 16 15 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 16 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 17 N -0.95 -57.49 10.09 21.65 0.22 -57.27 16 18 Si 0.99 46.41 29.55 68.60 2.03 48.44 16 19 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 C 0.11 5.13 7.03 86.73 0.61 5.74 16 23 C -0.12 -2.21 9.70 22.27 0.22 -2.00 16 24 C -0.13 -2.10 9.70 22.27 0.22 -1.88 16 25 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 26 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 27 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 28 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 29 H 0.13 2.33 8.06 -2.91 -0.02 2.30 16 30 H 0.08 1.74 8.09 -2.38 -0.02 1.72 16 31 H 0.08 1.77 8.08 -2.39 -0.02 1.75 16 32 H 0.06 1.39 8.11 -2.38 -0.02 1.37 16 33 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.08 4.53 5.87 -2.39 -0.01 4.52 16 37 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 38 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 39 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.03 1.18 8.05 -2.39 -0.02 1.16 16 41 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 42 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -67.39 344.09 4.09 -63.30 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.97 Total: 12.28 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 4.72 Total: -15.74 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -2.13 Total: -93.73 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -1.50 Total: -14.55 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -67.39 4.09 -63.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206416763.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.672 kcal (2) G-P(sol) polarization free energy of solvation -67.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds