Wall clock time and date at job start Mon Mar 30 2020 02:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38243 * 119.99843 * 2 1 4 4 C 1.38232 * 120.00069 * 179.97438 * 3 2 1 5 5 C 1.38231 * 119.99806 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00002 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47188 * 89.99740 * 6 5 4 8 8 O 1.42898 * 109.47224 * 180.02562 * 7 6 5 9 9 C 1.42895 * 114.00038 * 180.02562 * 8 7 6 10 10 H 1.08996 * 110.64095 * 328.31055 * 9 8 7 11 11 C 1.55163 * 110.87026 * 205.06585 * 9 8 7 12 12 C 1.55140 * 101.48282 * 205.89618 * 11 9 8 13 13 N 1.47425 * 104.72236 * 37.29725 * 12 11 9 14 14 C 1.36933 * 125.64884 * 155.81526 * 13 12 11 15 15 H 1.08003 * 119.99721 * 193.32768 * 14 13 12 16 16 C 1.38816 * 119.99961 * 13.32323 * 14 13 12 17 17 N 1.31616 * 119.99775 * 27.26821 * 16 14 13 18 18 Si 1.86796 * 119.99890 * 207.26642 * 16 14 13 19 19 H 1.48502 * 109.47389 * 60.00434 * 18 16 14 20 20 H 1.48499 * 109.47223 * 300.00034 * 18 16 14 21 21 H 1.48500 * 109.47095 * 180.02562 * 18 16 14 22 22 C 1.47029 * 108.70123 * 335.55406 * 13 12 11 23 23 C 1.38239 * 120.00504 * 0.27609 * 5 4 3 24 24 C 1.38231 * 120.00281 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47023 * 90.00432 * 1 2 3 26 26 H 1.08999 * 109.46687 * 210.00350 * 1 2 3 27 27 H 1.08997 * 109.47473 * 330.00006 * 1 2 3 28 28 H 1.07998 * 119.99580 * 359.97438 * 3 2 1 29 29 H 1.07992 * 119.99761 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.46932 * 329.99964 * 6 5 4 31 31 H 1.09003 * 109.47245 * 210.00085 * 6 5 4 32 32 H 1.09000 * 109.47001 * 60.00266 * 7 6 5 33 33 H 1.09003 * 109.47309 * 300.00306 * 7 6 5 34 34 H 1.08998 * 111.00445 * 324.13396 * 11 9 8 35 35 H 1.09003 * 111.00541 * 87.95429 * 11 9 8 36 36 H 1.08995 * 110.49999 * 278.45345 * 12 11 9 37 37 H 1.08999 * 110.33731 * 156.05932 * 12 11 9 38 38 H 0.97006 * 120.00147 * 5.85176 * 17 16 14 39 39 H 1.08996 * 109.88404 * 120.70446 * 22 13 12 40 40 H 1.09003 * 109.87364 * 241.71491 * 22 13 12 41 41 H 1.07990 * 120.00199 * 179.72696 * 23 5 4 42 42 H 1.07996 * 120.00242 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0002 0.0016 6 6 5.7787 0.0002 0.0028 7 6 6.2876 0.0009 1.4457 8 8 7.7166 0.0015 1.4468 9 6 8.2968 0.0016 2.7526 10 1 7.6594 0.5371 3.4562 11 6 9.7211 0.6165 2.7246 12 6 10.3776 -0.0690 3.9518 13 7 9.8405 -1.4419 3.9459 14 6 10.4390 -2.5355 4.5124 15 1 10.0847 -3.5280 4.2760 16 6 11.5012 -2.3684 5.3903 17 7 11.6064 -1.2603 6.0927 18 14 12.7813 -3.7163 5.5748 19 1 13.4346 -3.9614 4.2639 20 1 12.1234 -4.9634 6.0409 21 1 13.8033 -3.2959 6.5668 22 6 8.5526 -1.4412 3.2365 23 6 3.5806 -1.1971 -0.0036 24 6 2.1982 -1.1971 0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5138 28 1 1.6581 2.1325 -0.0004 29 1 4.1204 2.1326 0.0001 30 1 6.1424 0.8899 -0.5112 31 1 6.1425 -0.8900 -0.5104 32 1 5.9239 -0.8889 1.9596 33 1 5.9238 0.8911 1.9588 34 1 10.2411 0.3559 1.8028 35 1 9.6826 1.6978 2.8568 36 1 10.0967 0.4443 4.8714 37 1 11.4619 -0.0854 3.8415 38 1 10.8990 -0.5973 6.0615 39 1 8.5998 -2.1160 2.3818 40 1 7.7570 -1.7545 3.9126 41 1 4.1206 -2.1322 -0.0072 42 1 1.6583 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206416764.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:12 Heat of formation + Delta-G solvation = -12.315324 kcal Electronic energy + Delta-G solvation = -20368.274898 eV Core-core repulsion = 17313.267097 eV Total energy + Delta-G solvation = -3055.007801 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.72395 -38.48745 -36.29690 -34.28241 -32.34272 -31.12753 -30.46672 -29.09586 -27.27032 -26.17170 -24.19534 -22.92683 -22.85118 -20.83485 -20.28439 -20.14331 -17.55856 -16.81216 -16.14013 -15.90477 -15.27098 -14.96298 -14.80807 -14.17609 -14.02645 -13.75601 -13.61590 -13.34640 -13.06366 -12.88264 -12.71169 -12.34525 -12.16138 -12.12516 -11.51256 -11.33243 -11.26112 -11.12237 -10.82394 -10.71863 -10.56884 -10.46422 -9.99468 -9.95926 -9.52033 -9.18680 -9.10562 -8.69503 -8.39918 -6.93092 -6.07251 -3.09539 1.09693 1.20375 3.46432 3.52322 3.57044 3.74571 3.89146 4.57228 4.59771 4.63340 4.81749 4.86487 4.90384 5.14496 5.16207 5.24766 5.26846 5.29555 5.37251 5.42746 5.44782 5.48574 5.53323 5.60601 5.70290 5.76618 5.83478 5.93722 5.99918 6.11134 6.21361 6.30190 6.37357 6.40427 6.47251 6.56533 6.65915 6.81330 6.98356 7.05579 7.57476 7.80144 8.50279 9.04672 9.84549 10.38538 11.26276 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035901 B = 0.002823 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.727541 B = 9916.710524 C =10294.534537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.120 4.120 4 C -0.111 4.111 5 C -0.083 4.083 6 C -0.079 4.079 7 C 0.068 3.932 8 O -0.378 6.378 9 C 0.078 3.922 10 H 0.063 0.937 11 C -0.129 4.129 12 C 0.145 3.855 13 N -0.602 5.602 14 C -0.334 4.334 15 H 0.066 0.934 16 C -0.028 4.028 17 N -0.921 5.921 18 Si 1.066 2.934 19 H -0.294 1.294 20 H -0.293 1.293 21 H -0.285 1.285 22 C 0.117 3.883 23 C -0.110 4.110 24 C -0.119 4.119 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.027 0.973 37 H 0.058 0.942 38 H 0.268 0.732 39 H 0.035 0.965 40 H 0.021 0.979 41 H 0.124 0.876 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.477 5.353 -13.264 24.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.129 4.129 5 C -0.084 4.084 6 C -0.116 4.116 7 C -0.008 4.008 8 O -0.297 6.297 9 C 0.020 3.980 10 H 0.081 0.919 11 C -0.168 4.168 12 C 0.019 3.981 13 N -0.331 5.331 14 C -0.462 4.462 15 H 0.084 0.916 16 C -0.229 4.229 17 N -0.563 5.563 18 Si 0.895 3.105 19 H -0.221 1.221 20 H -0.221 1.221 21 H -0.211 1.211 22 C -0.009 4.009 23 C -0.128 4.128 24 C -0.137 4.137 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.138 0.862 29 H 0.141 0.859 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.038 0.962 41 H 0.142 0.858 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.895 4.854 -12.652 22.447 hybrid contribution -1.758 0.308 -0.429 1.835 sum -19.653 5.162 -13.081 24.166 Atomic orbital electron populations 1.20786 0.91311 1.02749 1.02209 1.19935 0.96043 0.93294 1.00073 1.21015 0.94134 0.97493 1.01197 1.21079 0.94145 0.97686 1.00009 1.19771 0.95151 0.93301 1.00131 1.20480 0.90230 1.04194 0.96708 1.22402 0.82006 1.00253 0.96186 1.87877 1.18461 1.95045 1.28340 1.23167 0.94634 0.96936 0.83280 0.91851 1.22969 0.94193 0.98836 1.00765 1.21607 0.97947 0.85467 0.93062 1.44465 1.18204 1.05110 1.65290 1.19781 1.16422 0.85405 1.24590 0.91579 1.25748 1.00727 1.02772 0.93605 1.70792 1.37805 1.11253 1.36480 0.83513 0.76558 0.74434 0.75965 1.22089 1.22054 1.21050 1.21738 0.89350 0.94298 0.95504 1.21122 0.94171 0.97814 0.99668 1.21033 0.94152 0.97540 1.01013 0.91278 0.91576 0.91611 0.86151 0.85939 0.90207 0.90061 0.93294 0.93583 0.90654 0.91507 0.95534 0.92374 0.91990 0.94691 0.96156 0.85802 0.86089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.01 36.01 0.36 -0.37 16 2 C -0.09 -0.85 5.88 -104.62 -0.62 -1.46 16 3 C -0.12 -1.10 9.70 -39.58 -0.38 -1.49 16 4 C -0.11 -1.11 9.70 -39.59 -0.38 -1.49 16 5 C -0.08 -0.90 5.13 -104.62 -0.54 -1.44 16 6 C -0.08 -0.90 5.72 -27.88 -0.16 -1.06 16 7 C 0.07 0.94 5.79 37.16 0.22 1.15 16 8 O -0.38 -6.49 10.08 -35.23 -0.36 -6.84 16 9 C 0.08 1.47 3.39 -24.90 -0.08 1.38 16 10 H 0.06 1.12 7.88 -51.93 -0.41 0.71 16 11 C -0.13 -2.51 6.83 -24.45 -0.17 -2.67 16 12 C 0.14 3.50 5.22 -2.40 -0.01 3.49 16 13 N -0.60 -16.13 3.33 -169.93 -0.57 -16.70 16 14 C -0.33 -9.83 10.05 -15.06 -0.15 -9.98 16 15 H 0.07 1.93 7.96 -52.48 -0.42 1.51 16 16 C -0.03 -0.81 5.09 -17.43 -0.09 -0.90 16 17 N -0.92 -28.42 12.82 55.49 0.71 -27.71 16 18 Si 1.07 25.94 30.00 -169.99 -5.10 20.84 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 C 0.12 2.65 7.01 -3.06 -0.02 2.63 16 23 C -0.11 -1.14 9.70 -39.58 -0.38 -1.53 16 24 C -0.12 -1.13 9.70 -39.58 -0.38 -1.52 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 27 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 28 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 29 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 31 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.59 8.11 -51.93 -0.42 0.17 16 34 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.03 0.67 6.84 -51.93 -0.36 0.31 16 37 H 0.06 1.52 7.73 -51.93 -0.40 1.12 16 38 H 0.27 8.25 5.83 -40.82 -0.24 8.01 16 39 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 344.17 15.07 5.19 5.19 Total: -1.00 -32.70 344.17 -9.86 -42.56 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -6.94 Total: -2.07 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -2.80 Total: -15.27 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: 0.15 Total: -44.41 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.36 Total: -6.84 kcal Atomic # 14 Polarization: 25.94 SS G_CDS: -5.10 Total: 20.84 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.70 -9.86 -42.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206416764.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.249 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds