Wall clock time and date at job start Mon Mar 30 2020 02:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38243 * 119.99843 * 2 1 4 4 C 1.38232 * 120.00069 * 179.97438 * 3 2 1 5 5 C 1.38231 * 119.99806 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00002 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47188 * 89.99740 * 6 5 4 8 8 O 1.42898 * 109.47224 * 180.02562 * 7 6 5 9 9 C 1.42895 * 114.00038 * 180.02562 * 8 7 6 10 10 H 1.08996 * 110.64095 * 328.31055 * 9 8 7 11 11 C 1.55163 * 110.87026 * 205.06585 * 9 8 7 12 12 C 1.55140 * 101.48282 * 205.89618 * 11 9 8 13 13 N 1.47425 * 104.72236 * 37.29725 * 12 11 9 14 14 C 1.36933 * 125.64884 * 155.81526 * 13 12 11 15 15 H 1.08003 * 119.99721 * 193.32768 * 14 13 12 16 16 C 1.38816 * 119.99961 * 13.32323 * 14 13 12 17 17 N 1.31616 * 119.99775 * 27.26821 * 16 14 13 18 18 Si 1.86796 * 119.99890 * 207.26642 * 16 14 13 19 19 H 1.48502 * 109.47389 * 60.00434 * 18 16 14 20 20 H 1.48499 * 109.47223 * 300.00034 * 18 16 14 21 21 H 1.48500 * 109.47095 * 180.02562 * 18 16 14 22 22 C 1.47029 * 108.70123 * 335.55406 * 13 12 11 23 23 C 1.38239 * 120.00504 * 0.27609 * 5 4 3 24 24 C 1.38231 * 120.00281 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47023 * 90.00432 * 1 2 3 26 26 H 1.08999 * 109.46687 * 210.00350 * 1 2 3 27 27 H 1.08997 * 109.47473 * 330.00006 * 1 2 3 28 28 H 1.07998 * 119.99580 * 359.97438 * 3 2 1 29 29 H 1.07992 * 119.99761 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.46932 * 329.99964 * 6 5 4 31 31 H 1.09003 * 109.47245 * 210.00085 * 6 5 4 32 32 H 1.09000 * 109.47001 * 60.00266 * 7 6 5 33 33 H 1.09003 * 109.47309 * 300.00306 * 7 6 5 34 34 H 1.08998 * 111.00445 * 324.13396 * 11 9 8 35 35 H 1.09003 * 111.00541 * 87.95429 * 11 9 8 36 36 H 1.08995 * 110.49999 * 278.45345 * 12 11 9 37 37 H 1.08999 * 110.33731 * 156.05932 * 12 11 9 38 38 H 0.97006 * 120.00147 * 5.85176 * 17 16 14 39 39 H 1.08996 * 109.88404 * 120.70446 * 22 13 12 40 40 H 1.09003 * 109.87364 * 241.71491 * 22 13 12 41 41 H 1.07990 * 120.00199 * 179.72696 * 23 5 4 42 42 H 1.07996 * 120.00242 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0002 0.0016 6 6 5.7787 0.0002 0.0028 7 6 6.2876 0.0009 1.4457 8 8 7.7166 0.0015 1.4468 9 6 8.2968 0.0016 2.7526 10 1 7.6594 0.5371 3.4562 11 6 9.7211 0.6165 2.7246 12 6 10.3776 -0.0690 3.9518 13 7 9.8405 -1.4419 3.9459 14 6 10.4390 -2.5355 4.5124 15 1 10.0847 -3.5280 4.2760 16 6 11.5012 -2.3684 5.3903 17 7 11.6064 -1.2603 6.0927 18 14 12.7813 -3.7163 5.5748 19 1 13.4346 -3.9614 4.2639 20 1 12.1234 -4.9634 6.0409 21 1 13.8033 -3.2959 6.5668 22 6 8.5526 -1.4412 3.2365 23 6 3.5806 -1.1971 -0.0036 24 6 2.1982 -1.1971 0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5138 28 1 1.6581 2.1325 -0.0004 29 1 4.1204 2.1326 0.0001 30 1 6.1424 0.8899 -0.5112 31 1 6.1425 -0.8900 -0.5104 32 1 5.9239 -0.8889 1.9596 33 1 5.9238 0.8911 1.9588 34 1 10.2411 0.3559 1.8028 35 1 9.6826 1.6978 2.8568 36 1 10.0967 0.4443 4.8714 37 1 11.4619 -0.0854 3.8415 38 1 10.8990 -0.5973 6.0615 39 1 8.5998 -2.1160 2.3818 40 1 7.7570 -1.7545 3.9126 41 1 4.1206 -2.1322 -0.0072 42 1 1.6583 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206416764.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:11 Heat of formation + Delta-G solvation = -29.877160 kcal Electronic energy + Delta-G solvation = -20369.036436 eV Core-core repulsion = 17313.267097 eV Total energy + Delta-G solvation = -3055.769339 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.51768 -39.98233 -37.89946 -35.25240 -34.24696 -31.83207 -31.51615 -30.86076 -28.95432 -27.12703 -26.17717 -23.81356 -23.63671 -22.13948 -22.03662 -21.41723 -19.68367 -18.15609 -17.08308 -16.76859 -16.56519 -16.21850 -15.88185 -15.66861 -15.54737 -15.14112 -14.96283 -14.53300 -14.30486 -14.05057 -13.74701 -13.63112 -13.27259 -13.04060 -12.81192 -12.68406 -12.58267 -12.51721 -12.21774 -12.09451 -11.95259 -11.89122 -11.77115 -11.61486 -11.59189 -10.67505 -10.50441 -9.84459 -9.42243 -9.09971 -8.38073 -5.37494 0.36016 0.48209 1.56067 1.64709 1.84124 2.44136 2.63827 2.87153 3.14449 3.50175 3.66457 3.82161 3.87622 3.91568 4.01262 4.10860 4.11909 4.14603 4.26851 4.37250 4.42537 4.46443 4.57856 4.59211 4.78042 4.79870 4.80916 4.83824 4.88539 4.92686 4.95636 5.01322 5.07342 5.19857 5.22982 5.30308 5.49699 5.58638 5.69297 5.70591 6.11486 6.20774 6.26452 6.84188 7.64965 8.21374 8.95382 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035901 B = 0.002823 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.727541 B = 9916.710524 C =10294.534537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.128 4.128 4 C -0.119 4.119 5 C -0.099 4.099 6 C -0.070 4.070 7 C 0.065 3.935 8 O -0.384 6.384 9 C 0.094 3.906 10 H 0.082 0.918 11 C -0.114 4.114 12 C 0.147 3.853 13 N -0.627 5.627 14 C -0.352 4.352 15 H 0.059 0.941 16 C -0.078 4.078 17 N -0.946 5.946 18 Si 1.119 2.881 19 H -0.281 1.281 20 H -0.274 1.274 21 H -0.288 1.288 22 C 0.113 3.887 23 C -0.125 4.125 24 C -0.130 4.130 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.141 0.859 29 H 0.135 0.865 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.015 0.985 37 H 0.028 0.972 38 H 0.257 0.743 39 H 0.027 0.973 40 H 0.017 0.983 41 H 0.125 0.875 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.832 5.871 -14.249 25.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 C -0.146 4.146 4 C -0.137 4.137 5 C -0.099 4.099 6 C -0.107 4.107 7 C -0.012 4.012 8 O -0.303 6.303 9 C 0.036 3.964 10 H 0.099 0.901 11 C -0.152 4.152 12 C 0.021 3.979 13 N -0.355 5.355 14 C -0.480 4.480 15 H 0.077 0.923 16 C -0.273 4.273 17 N -0.589 5.589 18 Si 0.942 3.058 19 H -0.207 1.207 20 H -0.199 1.199 21 H -0.213 1.213 22 C -0.012 4.012 23 C -0.143 4.143 24 C -0.148 4.148 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.158 0.842 29 H 0.153 0.847 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.121 0.879 36 H 0.033 0.967 37 H 0.047 0.953 38 H 0.068 0.932 39 H 0.045 0.955 40 H 0.035 0.965 41 H 0.143 0.857 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.290 5.378 -13.665 24.244 hybrid contribution -1.461 0.142 -0.160 1.477 sum -20.751 5.520 -13.825 25.538 Atomic orbital electron populations 1.20834 0.89470 1.03563 1.03083 1.20311 0.97540 0.93083 0.98966 1.21323 0.94045 0.98509 1.00681 1.21297 0.94762 0.97846 0.99789 1.19764 0.94648 0.93918 1.01567 1.20385 0.90835 1.04355 0.95106 1.22613 0.80047 1.00556 0.97950 1.87868 1.20555 1.94885 1.26990 1.22900 0.94892 0.94152 0.84477 0.90059 1.22847 0.93833 1.00435 0.98122 1.21540 0.96550 0.84896 0.94892 1.44755 1.20025 1.05497 1.65217 1.20054 1.17128 0.86227 1.24638 0.92262 1.27230 1.02536 1.04313 0.93230 1.70901 1.37791 1.12069 1.38108 0.82817 0.74099 0.72494 0.76358 1.20705 1.19941 1.21326 1.21876 0.87569 0.97113 0.94689 1.21286 0.94888 0.97934 1.00158 1.21290 0.93963 0.98619 1.00930 0.90274 0.90960 0.90658 0.84154 0.84740 0.89440 0.90522 0.93954 0.92258 0.90731 0.87942 0.96721 0.95333 0.93219 0.95459 0.96536 0.85687 0.84639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 71.24 0.71 -0.48 16 2 C -0.10 -1.61 5.88 -19.86 -0.12 -1.72 16 3 C -0.13 -2.08 9.70 22.27 0.22 -1.87 16 4 C -0.12 -2.17 9.70 22.27 0.22 -1.95 16 5 C -0.10 -2.03 5.13 -19.86 -0.10 -2.13 16 6 C -0.07 -1.51 5.72 29.85 0.17 -1.34 16 7 C 0.06 1.68 5.79 71.98 0.42 2.09 16 8 O -0.38 -12.52 10.08 -148.98 -1.50 -14.02 16 9 C 0.09 3.42 3.39 31.78 0.11 3.52 16 10 H 0.08 2.68 7.88 -2.39 -0.02 2.67 16 11 C -0.11 -4.27 6.83 32.07 0.22 -4.05 16 12 C 0.15 7.18 5.22 86.94 0.45 7.64 16 13 N -0.63 -34.10 3.33 -691.52 -2.30 -36.40 16 14 C -0.35 -21.07 10.05 84.03 0.84 -20.23 16 15 H 0.06 3.53 7.96 -2.91 -0.02 3.50 16 16 C -0.08 -4.61 5.09 84.86 0.43 -4.18 16 17 N -0.95 -59.45 12.82 21.65 0.28 -59.17 16 18 Si 1.12 52.54 30.00 68.60 2.06 54.60 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 22 C 0.11 5.12 7.01 86.73 0.61 5.73 16 23 C -0.12 -2.51 9.70 22.27 0.22 -2.29 16 24 C -0.13 -2.31 9.70 22.27 0.22 -2.09 16 25 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 0.68 8.09 -2.39 -0.02 0.66 16 27 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 28 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 29 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 30 H 0.09 1.74 8.09 -2.39 -0.02 1.72 16 31 H 0.08 1.71 8.08 -2.39 -0.02 1.69 16 32 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.40 8.11 -2.39 -0.02 1.38 16 34 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 36 H 0.02 0.77 6.84 -2.39 -0.02 0.75 16 37 H 0.03 1.53 7.73 -2.39 -0.02 1.52 16 38 H 0.26 16.28 5.83 -92.70 -0.54 15.74 16 39 H 0.03 1.27 8.06 -2.39 -0.02 1.25 16 40 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.13 2.35 8.06 -2.92 -0.02 2.33 16 42 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -70.75 344.17 4.34 -66.41 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 1.20 Total: 11.93 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: 4.61 Total: -23.34 kcal Atomic # 7 Polarization: -93.56 SS G_CDS: -2.02 Total: -95.58 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -1.50 Total: -14.02 kcal Atomic # 14 Polarization: 52.54 SS G_CDS: 2.06 Total: 54.60 kcal Total: -70.75 4.34 -66.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206416764.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.532 kcal (2) G-P(sol) polarization free energy of solvation -70.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds