Wall clock time and date at job start Mon Mar 30 2020 01:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00062 * 2 1 4 4 H 1.48501 * 109.47137 * 239.99693 * 3 2 1 5 5 H 1.48496 * 109.46898 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46880 * 119.99989 * 3 2 1 7 7 C 1.38819 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99880 * 203.56374 * 7 2 1 9 9 N 1.36931 * 119.99777 * 23.57186 * 7 2 1 10 10 C 1.46494 * 120.00476 * 33.04752 * 9 7 2 11 11 C 1.50703 * 109.47464 * 89.99850 * 10 9 7 12 12 C 1.38233 * 119.99765 * 269.72799 * 11 10 9 13 13 C 1.38240 * 119.99489 * 179.78576 * 12 11 10 14 14 C 1.38230 * 119.99956 * 0.44255 * 13 12 11 15 15 C 1.38238 * 120.00515 * 359.81429 * 14 13 12 16 16 C 1.38234 * 119.99691 * 90.00140 * 11 10 9 17 17 C 1.46507 * 119.99559 * 212.76899 * 9 7 2 18 18 C 1.53005 * 109.46759 * 85.77675 * 17 9 7 19 19 H 1.09000 * 109.52139 * 304.87158 * 18 17 9 20 20 C 1.53185 * 109.51957 * 184.68426 * 18 17 9 21 21 C 1.53172 * 109.03188 * 183.11126 * 20 18 17 22 22 C 1.53090 * 109.16702 * 56.98194 * 21 20 18 23 23 O 1.42900 * 109.41442 * 302.38625 * 22 21 20 24 24 C 1.42911 * 114.09580 * 61.16041 * 23 22 21 25 25 H 0.96995 * 120.00027 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47228 * 210.00288 * 10 9 7 27 27 H 1.09004 * 109.47002 * 329.99830 * 10 9 7 28 28 H 1.07994 * 120.00119 * 359.97438 * 12 11 10 29 29 H 1.07996 * 119.99621 * 180.27457 * 13 12 11 30 30 H 1.08005 * 120.00237 * 179.83605 * 14 13 12 31 31 H 1.07996 * 120.00600 * 179.97438 * 15 14 13 32 32 H 1.07999 * 120.00450 * 359.97438 * 16 11 10 33 33 H 1.08999 * 109.46906 * 205.76686 * 17 9 7 34 34 H 1.08992 * 109.47565 * 325.77627 * 17 9 7 35 35 H 1.08995 * 109.54153 * 302.97957 * 20 18 17 36 36 H 1.09002 * 109.53933 * 63.24499 * 20 18 17 37 37 H 1.09007 * 109.52566 * 297.06989 * 21 20 18 38 38 H 1.09002 * 109.57377 * 176.91515 * 21 20 18 39 39 H 1.09002 * 109.48397 * 182.40575 * 22 21 20 40 40 H 1.08996 * 109.48191 * 62.36894 * 22 21 20 41 41 H 1.08996 * 109.48014 * 178.86124 * 24 23 22 42 42 H 1.08995 * 109.49439 * 58.82597 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0227 -1.2410 0.3745 9 7 1.4112 -2.3388 -0.4732 10 6 0.4479 -2.2550 -1.5736 11 6 1.1729 -2.3921 -2.8876 12 6 1.6506 -1.2674 -3.5340 13 6 2.3196 -1.3937 -4.7372 14 6 2.5028 -2.6436 -5.2983 15 6 2.0204 -3.7678 -4.6545 16 6 1.3553 -3.6420 -3.4492 17 6 1.7384 -3.6394 0.1165 18 6 0.8544 -3.8806 1.3419 19 1 0.9638 -3.0499 2.0391 20 6 1.2744 -5.1846 2.0273 21 6 0.3336 -5.4551 3.2054 22 6 -1.1090 -5.5053 2.6954 23 8 -1.4249 -4.2743 2.0420 24 6 -0.6083 -3.9916 0.9038 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2844 -3.0566 -1.4773 27 1 -0.0612 -1.2917 -1.5383 28 1 1.5039 -0.2906 -3.0976 29 1 2.6967 -0.5155 -5.2400 30 1 3.0231 -2.7420 -6.2396 31 1 2.1631 -4.7443 -5.0931 32 1 0.9785 -4.5203 -2.9462 33 1 1.5635 -4.4256 -0.6179 34 1 2.7861 -3.6491 0.4167 35 1 1.2126 -6.0072 1.3149 36 1 2.2976 -5.0919 2.3915 37 1 0.4323 -4.6569 3.9412 38 1 0.5903 -6.4090 3.6662 39 1 -1.7867 -5.6550 3.5358 40 1 -1.2167 -6.3292 1.9901 41 1 -0.9252 -3.0508 0.4537 42 1 -0.7094 -4.7956 0.1749 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207471666.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:11 Heat of formation + Delta-G solvation = -14.151331 kcal Electronic energy + Delta-G solvation = -22017.928047 eV Core-core repulsion = 18962.840631 eV Total energy + Delta-G solvation = -3055.087416 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -38.99663 -38.45620 -35.82428 -33.40645 -31.75613 -31.24353 -30.21631 -29.57267 -25.92645 -25.48661 -24.40631 -22.69496 -21.85543 -21.05533 -20.00355 -19.45670 -16.87387 -16.05673 -15.62519 -15.51021 -14.95637 -14.44530 -14.32709 -14.23785 -14.00366 -13.89293 -13.38140 -12.78123 -12.60536 -12.49756 -12.20982 -11.98361 -11.70338 -11.53169 -11.08026 -10.88833 -10.81726 -10.72565 -10.54813 -10.40089 -10.32052 -9.98747 -9.90682 -9.84965 -9.62153 -8.87856 -8.53552 -8.27974 -7.99210 -6.68948 -5.84005 -3.34311 2.03820 2.07676 3.35011 3.41879 3.44488 4.39489 4.42209 4.52417 5.15458 5.21631 5.24503 5.29542 5.45883 5.50514 5.54535 5.57443 5.63673 5.76280 5.86874 5.92414 5.96349 6.06612 6.16482 6.23416 6.24783 6.27557 6.33794 6.41713 6.48230 6.56874 6.73998 6.77403 6.78836 6.95850 7.07881 7.16146 7.19987 7.41564 7.64882 7.74664 7.77091 7.78815 8.44554 9.12040 9.75950 10.31078 11.16727 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013585 B = 0.007123 C = 0.005211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.596898 B = 3929.861287 C = 5371.726244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.012 3.988 3 Si 0.890 3.110 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.253 4.253 8 H 0.061 0.939 9 N -0.573 5.573 10 C 0.165 3.835 11 C -0.070 4.070 12 C -0.098 4.098 13 C -0.128 4.128 14 C -0.145 4.145 15 C -0.130 4.130 16 C -0.125 4.125 17 C 0.156 3.844 18 C -0.137 4.137 19 H 0.083 0.917 20 C -0.117 4.117 21 C -0.153 4.153 22 C 0.061 3.939 23 O -0.385 6.385 24 C 0.074 3.926 25 H 0.257 0.743 26 H 0.034 0.966 27 H 0.111 0.889 28 H 0.119 0.881 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.036 0.964 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.041 0.959 41 H 0.113 0.887 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.768 -9.190 -2.302 9.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.188 4.188 3 Si 0.720 3.280 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.382 4.382 8 H 0.078 0.922 9 N -0.291 5.291 10 C 0.039 3.961 11 C -0.073 4.073 12 C -0.117 4.117 13 C -0.146 4.146 14 C -0.163 4.163 15 C -0.148 4.148 16 C -0.144 4.144 17 C 0.030 3.970 18 C -0.158 4.158 19 H 0.102 0.898 20 C -0.155 4.155 21 C -0.191 4.191 22 C -0.016 4.016 23 O -0.304 6.304 24 C -0.002 4.002 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.129 0.871 28 H 0.137 0.863 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.131 0.869 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.492 -8.913 -2.191 9.192 hybrid contribution 0.889 0.647 -0.096 1.104 sum 1.381 -8.266 -2.287 8.687 Atomic orbital electron populations 1.69929 1.05365 1.25956 1.51121 1.24971 0.94905 0.98399 1.00515 0.86560 0.79394 0.83697 0.78389 1.20898 1.21578 1.20786 1.18979 0.95169 0.86101 1.37958 0.92150 1.43757 1.50223 1.01945 1.33200 1.20231 0.90324 1.03895 0.81652 1.21250 0.97032 0.92052 0.96932 1.21118 0.97293 0.99213 0.94046 1.21089 1.00006 0.96870 0.96623 1.20879 1.02359 0.93048 1.00021 1.20969 0.99859 0.97716 0.96257 1.21028 1.00400 0.97200 0.95722 1.20878 0.96263 0.88091 0.91807 1.22382 0.96402 0.96618 1.00371 0.89830 1.21630 0.98805 0.98276 0.96776 1.22161 0.96360 1.01618 0.98986 1.22457 0.95477 0.87305 0.96399 1.87959 1.58486 1.39107 1.44844 1.22752 0.90295 1.01146 0.86018 0.93335 0.94768 0.87134 0.86335 0.87249 0.87427 0.87396 0.87303 0.94518 0.93913 0.92733 0.92090 0.91304 0.91947 0.89946 0.94094 0.86874 0.95108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.83 11.29 55.49 0.63 -23.20 16 2 C 0.01 0.32 4.95 -17.43 -0.09 0.24 16 3 Si 0.89 20.95 29.61 -169.99 -5.03 15.91 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.25 -6.51 9.49 -15.06 -0.14 -6.65 16 8 H 0.06 1.59 7.93 -52.49 -0.42 1.18 16 9 N -0.57 -13.19 2.20 -174.61 -0.38 -13.57 16 10 C 0.16 3.64 4.53 -5.20 -0.02 3.62 16 11 C -0.07 -1.42 5.46 -104.62 -0.57 -1.99 16 12 C -0.10 -1.98 9.70 -39.58 -0.38 -2.36 16 13 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 16 14 C -0.14 -2.31 10.05 -39.58 -0.40 -2.70 16 15 C -0.13 -2.09 10.05 -39.58 -0.40 -2.48 16 16 C -0.12 -2.23 9.70 -39.58 -0.38 -2.61 16 17 C 0.16 3.10 5.13 -4.04 -0.02 3.08 16 18 C -0.14 -2.57 2.58 -90.47 -0.23 -2.80 16 19 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 20 C -0.12 -1.77 5.31 -26.55 -0.14 -1.91 16 21 C -0.15 -2.12 6.14 -26.60 -0.16 -2.29 16 22 C 0.06 0.88 6.84 37.20 0.25 1.14 16 23 O -0.39 -7.31 10.77 -35.23 -0.38 -7.69 16 24 C 0.07 1.42 5.12 37.21 0.19 1.61 16 25 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 26 H 0.03 0.71 6.48 -51.93 -0.34 0.38 16 27 H 0.11 2.78 5.21 -51.93 -0.27 2.51 16 28 H 0.12 2.56 8.06 -52.49 -0.42 2.14 16 29 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 31 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 33 H 0.04 0.67 8.04 -51.93 -0.42 0.26 16 34 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.11 2.54 6.46 -51.93 -0.34 2.20 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 336.20 15.07 5.07 5.07 Total: -1.00 -27.22 336.20 -9.83 -37.05 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.83 Total: 5.17 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -2.90 Total: -18.75 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.24 Total: -36.77 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.38 Total: -7.69 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.22 -9.83 -37.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207471666.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.900 kcal (2) G-P(sol) polarization free energy of solvation -27.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds