Wall clock time and date at job start Mon Mar 30 2020 01:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00062 * 2 1 4 4 H 1.48501 * 109.47137 * 239.99693 * 3 2 1 5 5 H 1.48496 * 109.46898 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46880 * 119.99989 * 3 2 1 7 7 C 1.38819 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99880 * 203.56374 * 7 2 1 9 9 N 1.36931 * 119.99777 * 23.57186 * 7 2 1 10 10 C 1.46494 * 120.00476 * 33.04752 * 9 7 2 11 11 C 1.50703 * 109.47464 * 89.99850 * 10 9 7 12 12 C 1.38233 * 119.99765 * 269.72799 * 11 10 9 13 13 C 1.38240 * 119.99489 * 179.78576 * 12 11 10 14 14 C 1.38230 * 119.99956 * 0.44255 * 13 12 11 15 15 C 1.38238 * 120.00515 * 359.81429 * 14 13 12 16 16 C 1.38234 * 119.99691 * 90.00140 * 11 10 9 17 17 C 1.46507 * 119.99559 * 212.76899 * 9 7 2 18 18 C 1.53005 * 109.46759 * 85.77675 * 17 9 7 19 19 H 1.09000 * 109.52139 * 304.87158 * 18 17 9 20 20 C 1.53185 * 109.51957 * 184.68426 * 18 17 9 21 21 C 1.53172 * 109.03188 * 183.11126 * 20 18 17 22 22 C 1.53090 * 109.16702 * 56.98194 * 21 20 18 23 23 O 1.42900 * 109.41442 * 302.38625 * 22 21 20 24 24 C 1.42911 * 114.09580 * 61.16041 * 23 22 21 25 25 H 0.96995 * 120.00027 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47228 * 210.00288 * 10 9 7 27 27 H 1.09004 * 109.47002 * 329.99830 * 10 9 7 28 28 H 1.07994 * 120.00119 * 359.97438 * 12 11 10 29 29 H 1.07996 * 119.99621 * 180.27457 * 13 12 11 30 30 H 1.08005 * 120.00237 * 179.83605 * 14 13 12 31 31 H 1.07996 * 120.00600 * 179.97438 * 15 14 13 32 32 H 1.07999 * 120.00450 * 359.97438 * 16 11 10 33 33 H 1.08999 * 109.46906 * 205.76686 * 17 9 7 34 34 H 1.08992 * 109.47565 * 325.77627 * 17 9 7 35 35 H 1.08995 * 109.54153 * 302.97957 * 20 18 17 36 36 H 1.09002 * 109.53933 * 63.24499 * 20 18 17 37 37 H 1.09007 * 109.52566 * 297.06989 * 21 20 18 38 38 H 1.09002 * 109.57377 * 176.91515 * 21 20 18 39 39 H 1.09002 * 109.48397 * 182.40575 * 22 21 20 40 40 H 1.08996 * 109.48191 * 62.36894 * 22 21 20 41 41 H 1.08996 * 109.48014 * 178.86124 * 24 23 22 42 42 H 1.08995 * 109.49439 * 58.82597 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0227 -1.2410 0.3745 9 7 1.4112 -2.3388 -0.4732 10 6 0.4479 -2.2550 -1.5736 11 6 1.1729 -2.3921 -2.8876 12 6 1.6506 -1.2674 -3.5340 13 6 2.3196 -1.3937 -4.7372 14 6 2.5028 -2.6436 -5.2983 15 6 2.0204 -3.7678 -4.6545 16 6 1.3553 -3.6420 -3.4492 17 6 1.7384 -3.6394 0.1165 18 6 0.8544 -3.8806 1.3419 19 1 0.9638 -3.0499 2.0391 20 6 1.2744 -5.1846 2.0273 21 6 0.3336 -5.4551 3.2054 22 6 -1.1090 -5.5053 2.6954 23 8 -1.4249 -4.2743 2.0420 24 6 -0.6083 -3.9916 0.9038 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2844 -3.0566 -1.4773 27 1 -0.0612 -1.2917 -1.5383 28 1 1.5039 -0.2906 -3.0976 29 1 2.6967 -0.5155 -5.2400 30 1 3.0231 -2.7420 -6.2396 31 1 2.1631 -4.7443 -5.0931 32 1 0.9785 -4.5203 -2.9462 33 1 1.5635 -4.4256 -0.6179 34 1 2.7861 -3.6491 0.4167 35 1 1.2126 -6.0072 1.3149 36 1 2.2976 -5.0919 2.3915 37 1 0.4323 -4.6569 3.9412 38 1 0.5903 -6.4090 3.6662 39 1 -1.7867 -5.6550 3.5358 40 1 -1.2167 -6.3292 1.9901 41 1 -0.9252 -3.0508 0.4537 42 1 -0.7094 -4.7956 0.1749 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207471666.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:10 Heat of formation + Delta-G solvation = -27.140773 kcal Electronic energy + Delta-G solvation = -22018.491311 eV Core-core repulsion = 18962.840631 eV Total energy + Delta-G solvation = -3055.650681 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.42550 -39.84952 -37.48784 -34.90271 -33.48588 -32.65134 -31.59505 -31.16251 -27.49585 -27.26239 -25.77732 -24.23615 -23.25305 -22.45793 -21.60409 -20.85595 -18.71476 -17.46919 -17.03637 -16.89871 -16.76982 -15.91103 -15.86885 -15.72574 -15.42493 -15.25764 -15.13130 -14.14530 -14.09666 -13.98543 -13.51901 -13.41687 -13.35229 -13.01298 -12.81034 -12.63929 -12.49842 -12.14715 -12.08471 -11.99043 -11.76673 -11.60831 -11.56986 -11.38091 -11.07104 -10.51114 -10.25363 -9.65784 -9.42935 -8.59114 -7.81870 -5.35183 0.65560 0.68175 1.42196 1.45632 1.50981 2.50543 3.03687 3.09662 3.27362 3.76635 3.98834 4.04409 4.13486 4.13858 4.19583 4.25598 4.34506 4.37157 4.44442 4.60673 4.68515 4.71023 4.76742 4.83643 4.85605 4.93703 4.97952 5.02960 5.07674 5.20556 5.27571 5.32358 5.34246 5.46859 5.60627 5.63461 5.72009 5.74028 5.82016 6.07515 6.31509 6.41577 6.49028 7.17028 7.87895 8.37530 9.14433 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013585 B = 0.007123 C = 0.005211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.596898 B = 3929.861287 C = 5371.726244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.028 4.028 3 Si 0.939 3.061 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.280 1.280 7 C -0.255 4.255 8 H 0.050 0.950 9 N -0.583 5.583 10 C 0.174 3.826 11 C -0.093 4.093 12 C -0.126 4.126 13 C -0.132 4.132 14 C -0.136 4.136 15 C -0.122 4.122 16 C -0.129 4.129 17 C 0.156 3.844 18 C -0.127 4.127 19 H 0.036 0.964 20 C -0.111 4.111 21 C -0.149 4.149 22 C 0.052 3.948 23 O -0.414 6.414 24 C 0.084 3.916 25 H 0.250 0.750 26 H 0.039 0.961 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.129 0.871 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.124 0.876 33 H 0.058 0.942 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.955 -12.146 -3.584 12.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.225 4.225 3 Si 0.768 3.232 4 H -0.208 1.208 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.386 4.386 8 H 0.068 0.932 9 N -0.302 5.302 10 C 0.049 3.951 11 C -0.095 4.095 12 C -0.145 4.145 13 C -0.150 4.150 14 C -0.154 4.154 15 C -0.140 4.140 16 C -0.148 4.148 17 C 0.031 3.969 18 C -0.148 4.148 19 H 0.055 0.945 20 C -0.149 4.149 21 C -0.187 4.187 22 C -0.024 4.024 23 O -0.334 6.334 24 C 0.008 3.992 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.147 0.853 30 H 0.164 0.836 31 H 0.164 0.836 32 H 0.142 0.858 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.691 -11.890 -3.475 12.502 hybrid contribution 0.518 1.480 0.257 1.589 sum 2.209 -10.410 -3.218 11.118 Atomic orbital electron populations 1.70064 1.06349 1.25783 1.52805 1.25466 0.95393 1.00537 1.01135 0.85786 0.78267 0.80981 0.78180 1.20813 1.21938 1.20552 1.19069 0.94727 0.87451 1.37303 0.93238 1.43878 1.49992 1.02314 1.34063 1.19959 0.90316 1.02063 0.82804 1.21061 0.98302 0.93547 0.96620 1.21031 0.99574 0.97975 0.95892 1.21329 0.99281 0.98831 0.95523 1.21334 1.01099 0.92003 1.00972 1.21403 0.97934 0.99601 0.95049 1.21194 1.00580 0.96327 0.96665 1.20965 0.96158 0.87203 0.92603 1.22182 0.96248 0.97303 0.99107 0.94492 1.21595 0.99424 0.96382 0.97498 1.22149 0.95551 1.02917 0.98086 1.22789 0.96447 0.85928 0.97264 1.87910 1.58794 1.41709 1.44949 1.22452 0.90220 0.99822 0.86690 0.94051 0.94274 0.90715 0.89429 0.85324 0.83614 0.83560 0.85828 0.92396 0.94269 0.90502 0.91422 0.92956 0.88293 0.87886 0.92036 0.91217 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.09 11.29 21.65 0.24 -51.84 16 2 C -0.03 -1.51 4.95 84.86 0.42 -1.09 16 3 Si 0.94 44.92 29.61 68.60 2.03 46.95 16 4 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 7 C -0.26 -13.76 9.49 84.04 0.80 -12.96 16 8 H 0.05 2.73 7.93 -2.91 -0.02 2.70 16 9 N -0.58 -27.87 2.20 -706.33 -1.55 -29.42 16 10 C 0.17 8.05 4.53 85.64 0.39 8.44 16 11 C -0.09 -3.81 5.46 -19.87 -0.11 -3.92 16 12 C -0.13 -5.20 9.70 22.27 0.22 -4.98 16 13 C -0.13 -4.39 10.05 22.27 0.22 -4.17 16 14 C -0.14 -3.81 10.05 22.27 0.22 -3.59 16 15 C -0.12 -3.43 10.05 22.27 0.22 -3.20 16 16 C -0.13 -4.35 9.70 22.27 0.22 -4.13 16 17 C 0.16 6.24 5.13 86.38 0.44 6.68 16 18 C -0.13 -4.84 2.58 -10.70 -0.03 -4.87 16 19 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 20 C -0.11 -3.13 5.31 30.71 0.16 -2.97 16 21 C -0.15 -3.77 6.14 30.68 0.19 -3.58 16 22 C 0.05 1.39 6.84 72.01 0.49 1.88 16 23 O -0.41 -15.70 10.77 -148.98 -1.60 -17.31 16 24 C 0.08 3.29 5.12 72.01 0.37 3.66 16 25 H 0.25 14.13 8.31 -92.71 -0.77 13.35 16 26 H 0.04 1.70 6.48 -2.39 -0.02 1.69 16 27 H 0.08 4.04 5.21 -2.39 -0.01 4.03 16 28 H 0.09 4.06 8.06 -2.91 -0.02 4.04 16 29 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 30 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 31 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 32 H 0.12 3.72 8.06 -2.91 -0.02 3.70 16 33 H 0.06 2.04 8.04 -2.39 -0.02 2.02 16 34 H 0.04 1.57 8.07 -2.39 -0.02 1.55 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.07 3.32 6.46 -2.39 -0.02 3.30 16 42 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -63.04 336.20 4.32 -58.72 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.97 Total: 21.71 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: 4.23 Total: -28.81 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -1.31 Total: -81.27 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -1.60 Total: -17.31 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -63.04 4.32 -58.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207471666.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.583 kcal (2) G-P(sol) polarization free energy of solvation -63.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds