Wall clock time and date at job start Mon Mar 30 2020 01:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 119.99871 * 2 1 4 4 H 1.48499 * 109.46936 * 275.52185 * 3 2 1 5 5 H 1.48500 * 109.47218 * 35.52028 * 3 2 1 6 6 H 1.48504 * 109.47244 * 155.52112 * 3 2 1 7 7 C 1.38818 * 120.00510 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99488 * 343.16576 * 7 2 1 9 9 N 1.36936 * 120.00405 * 163.16165 * 7 2 1 10 10 C 1.46496 * 120.00003 * 320.27388 * 9 7 2 11 11 C 1.50708 * 109.46853 * 269.99476 * 10 9 7 12 12 C 1.38226 * 119.99920 * 269.72787 * 11 10 9 13 13 C 1.38237 * 120.00091 * 179.78648 * 12 11 10 14 14 C 1.38239 * 119.99938 * 0.46421 * 13 12 11 15 15 C 1.38233 * 119.99521 * 359.76875 * 14 13 12 16 16 C 1.38234 * 119.99729 * 90.00015 * 11 10 9 17 17 C 1.46500 * 119.99820 * 140.26570 * 9 7 2 18 18 C 1.52996 * 109.46805 * 84.82234 * 17 9 7 19 19 H 1.08996 * 109.48393 * 54.91058 * 18 17 9 20 20 C 1.53099 * 109.48736 * 174.94475 * 18 17 9 21 21 C 1.53183 * 109.16148 * 177.59347 * 20 18 17 22 22 C 1.53172 * 109.03483 * 303.01887 * 21 20 18 23 23 C 1.53090 * 109.16621 * 56.98385 * 22 21 20 24 24 O 1.42902 * 109.41167 * 302.38707 * 23 22 21 25 25 H 0.96999 * 120.00210 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47363 * 29.99042 * 10 9 7 27 27 H 1.08999 * 109.47748 * 149.99663 * 10 9 7 28 28 H 1.08002 * 120.00294 * 359.97438 * 12 11 10 29 29 H 1.07996 * 120.00535 * 180.25331 * 13 12 11 30 30 H 1.07999 * 120.00477 * 179.78776 * 14 13 12 31 31 H 1.08005 * 119.99721 * 180.02562 * 15 14 13 32 32 H 1.07998 * 120.00440 * 359.97438 * 16 11 10 33 33 H 1.08998 * 109.47086 * 324.81984 * 17 9 7 34 34 H 1.08997 * 109.47160 * 204.82107 * 17 9 7 35 35 H 1.08999 * 109.51909 * 297.50125 * 20 18 17 36 36 H 1.08994 * 109.52105 * 57.69137 * 20 18 17 37 37 H 1.08997 * 109.53810 * 183.14874 * 21 20 18 38 38 H 1.09004 * 109.61196 * 62.92709 * 21 20 18 39 39 H 1.08994 * 109.52551 * 297.06864 * 22 21 20 40 40 H 1.09004 * 109.57156 * 176.91587 * 22 21 20 41 41 H 1.09001 * 109.47955 * 182.40458 * 23 22 21 42 42 H 1.08996 * 109.49048 * 62.37558 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3809 2.1137 -1.3936 5 1 1.5107 2.6162 0.8134 6 1 3.6012 1.4094 0.5801 7 6 2.0103 -1.2021 0.0005 8 1 1.5051 -2.1173 0.2718 9 7 3.3357 -1.2277 -0.3430 10 6 3.8231 -0.3939 -1.4445 11 6 3.7330 -1.1652 -2.7361 12 6 4.8018 -1.9335 -3.1582 13 6 4.7176 -2.6445 -4.3408 14 6 3.5682 -2.5795 -5.1060 15 6 2.5012 -1.8073 -4.6862 16 6 2.5838 -1.0998 -3.5015 17 6 4.2662 -2.0887 0.3913 18 6 4.2322 -3.4987 -0.2017 19 1 4.4366 -3.4483 -1.2712 20 6 5.2937 -4.3655 0.4808 21 6 5.2129 -5.7904 -0.0755 22 6 3.7957 -6.3307 0.1385 23 6 2.7921 -5.3881 -0.5308 24 8 2.9413 -4.0738 0.0102 25 1 -0.4850 0.8400 -0.0004 26 1 3.2132 0.5067 -1.5159 27 1 4.8606 -0.1164 -1.2587 28 1 5.7015 -1.9808 -2.5627 29 1 5.5510 -3.2480 -4.6686 30 1 3.5036 -3.1322 -6.0316 31 1 1.6030 -1.7569 -5.2838 32 1 1.7502 -0.4964 -3.1737 33 1 3.9734 -2.1286 1.4404 34 1 5.2754 -1.6849 0.3108 35 1 6.2830 -3.9528 0.2833 36 1 5.1133 -4.3833 1.5556 37 1 5.9283 -6.4264 0.4459 38 1 5.4425 -5.7808 -1.1410 39 1 3.5852 -6.3883 1.2063 40 1 3.7130 -7.3238 -0.3031 41 1 1.7790 -5.7447 -0.3453 42 1 2.9776 -5.3624 -1.6046 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207956734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:07 Heat of formation + Delta-G solvation = -4.207087 kcal Electronic energy + Delta-G solvation = -22544.266372 eV Core-core repulsion = 19489.610170 eV Total energy + Delta-G solvation = -3054.656202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.08430 -38.47523 -35.72112 -33.14621 -32.02628 -31.58891 -30.31739 -30.03558 -26.74254 -25.51933 -23.91455 -22.56008 -21.94627 -21.01876 -20.25689 -19.85013 -16.92381 -16.18273 -15.63400 -15.49488 -15.33551 -14.63305 -14.37522 -14.26067 -14.14789 -13.82832 -13.04387 -12.86857 -12.79346 -12.66268 -12.22852 -12.17373 -12.03086 -11.84791 -11.37257 -10.94385 -10.92057 -10.79031 -10.67802 -10.57999 -10.36089 -10.23809 -9.85170 -9.74476 -9.54783 -8.84359 -8.46445 -8.31373 -8.07034 -6.73788 -5.88191 -3.34547 1.94100 1.99160 3.32544 3.49209 3.52194 4.32779 4.43878 4.58159 4.95827 5.04683 5.13924 5.20260 5.34862 5.38421 5.43069 5.52903 5.54928 5.63342 5.71883 5.78406 5.84356 5.98029 6.00990 6.07211 6.09243 6.14797 6.18212 6.20801 6.24961 6.27727 6.43506 6.51810 6.53121 6.61431 6.67903 6.88137 6.98434 7.09051 7.37541 7.61295 7.98166 8.16594 8.57778 9.10155 9.79904 10.17002 11.26723 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013530 B = 0.008739 C = 0.006520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.022432 B = 3203.077312 C = 4293.180913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.032 3.968 3 Si 0.875 3.125 4 H -0.287 1.287 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.246 4.246 8 H 0.092 0.908 9 N -0.590 5.590 10 C 0.163 3.837 11 C -0.074 4.074 12 C -0.121 4.121 13 C -0.131 4.131 14 C -0.139 4.139 15 C -0.123 4.123 16 C -0.092 4.092 17 C 0.156 3.844 18 C 0.068 3.932 19 H 0.056 0.944 20 C -0.152 4.152 21 C -0.118 4.118 22 C -0.154 4.154 23 C 0.060 3.940 24 O -0.346 6.346 25 H 0.261 0.739 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.884 -8.136 -4.835 14.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.168 4.168 3 Si 0.706 3.294 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.310 5.310 10 C 0.038 3.962 11 C -0.077 4.077 12 C -0.140 4.140 13 C -0.149 4.149 14 C -0.158 4.158 15 C -0.141 4.141 16 C -0.111 4.111 17 C 0.030 3.970 18 C 0.008 3.992 19 H 0.074 0.926 20 C -0.190 4.190 21 C -0.156 4.156 22 C -0.192 4.192 23 C -0.018 4.018 24 O -0.264 6.264 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.141 0.859 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 10.563 -7.902 -4.659 13.990 hybrid contribution 0.554 0.544 -0.318 0.839 sum 11.117 -7.358 -4.977 14.231 Atomic orbital electron populations 1.69821 1.05804 1.26306 1.52636 1.25517 0.95091 0.97443 0.98705 0.86956 0.80581 0.85039 0.76788 1.21532 1.23139 1.19460 1.18976 0.83338 0.94103 1.41101 0.89070 1.44061 1.06579 1.49137 1.31179 1.20372 0.97561 0.93357 0.84923 1.20909 0.93171 0.97675 0.95990 1.20898 0.98423 0.98254 0.96394 1.20938 0.97769 1.00359 0.95816 1.20920 0.94333 1.00661 0.99871 1.21096 0.98167 0.97790 0.97089 1.21150 0.97630 0.98857 0.93458 1.20941 0.92574 0.87428 0.96072 1.23066 0.82619 0.94615 0.98925 0.92600 1.22233 0.99847 0.95634 1.01326 1.21536 0.96655 0.96627 1.00772 1.22192 0.96053 0.99091 1.01891 1.22429 0.98655 0.84322 0.96368 1.88191 1.31765 1.28025 1.78458 0.92903 0.92212 0.93364 0.87192 0.87279 0.87252 0.86918 0.85907 0.91965 0.92943 0.91698 0.91385 0.92348 0.92330 0.91402 0.91864 0.89739 0.94194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.97 55.49 0.78 -26.68 16 2 C 0.03 0.90 5.38 -17.43 -0.09 0.81 16 3 Si 0.88 22.00 24.77 -169.99 -4.21 17.79 16 4 H -0.29 -7.03 6.76 56.52 0.38 -6.65 16 5 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.27 -6.56 7.07 56.52 0.40 -6.16 16 7 C -0.25 -6.79 9.56 -15.06 -0.14 -6.93 16 8 H 0.09 2.82 7.09 -52.49 -0.37 2.45 16 9 N -0.59 -13.69 2.06 -174.61 -0.36 -14.05 16 10 C 0.16 3.50 4.59 -5.19 -0.02 3.48 16 11 C -0.07 -1.48 5.35 -104.62 -0.56 -2.04 16 12 C -0.12 -2.05 7.82 -39.59 -0.31 -2.36 16 13 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 14 C -0.14 -2.17 10.05 -39.58 -0.40 -2.57 16 15 C -0.12 -2.15 10.05 -39.58 -0.40 -2.54 16 16 C -0.09 -1.88 9.70 -39.58 -0.38 -2.26 16 17 C 0.16 3.07 5.46 -4.04 -0.02 3.05 16 18 C 0.07 1.22 2.89 -26.68 -0.08 1.14 16 19 H 0.06 1.04 6.00 -51.93 -0.31 0.73 16 20 C -0.15 -2.15 5.42 -26.59 -0.14 -2.29 16 21 C -0.12 -1.49 6.03 -26.55 -0.16 -1.65 16 22 C -0.15 -2.04 6.14 -26.60 -0.16 -2.21 16 23 C 0.06 0.98 6.84 37.20 0.25 1.24 16 24 O -0.35 -7.08 8.99 -35.23 -0.32 -7.40 16 25 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.06 1.41 3.08 -51.93 -0.16 1.25 16 27 H 0.05 0.92 7.80 -51.93 -0.41 0.51 16 28 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 30 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.11 1.73 8.06 -52.48 -0.42 1.30 16 32 H 0.12 2.75 8.06 -52.49 -0.42 2.32 16 33 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 34 H 0.05 0.89 7.83 -51.93 -0.41 0.48 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 329.65 15.07 4.97 4.97 Total: -1.00 -30.60 329.65 -8.89 -39.49 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -6.73 Total: 3.45 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -3.02 Total: -17.56 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.42 Total: -40.73 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.32 Total: -7.40 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.21 Total: 17.79 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.60 -8.89 -39.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207956734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.281 kcal (2) G-P(sol) polarization free energy of solvation -30.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds