Wall clock time and date at job start Mon Mar 30 2020 01:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 119.99871 * 2 1 4 4 H 1.48499 * 109.46936 * 275.52185 * 3 2 1 5 5 H 1.48500 * 109.47218 * 35.52028 * 3 2 1 6 6 H 1.48504 * 109.47244 * 155.52112 * 3 2 1 7 7 C 1.38818 * 120.00510 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99488 * 343.16576 * 7 2 1 9 9 N 1.36936 * 120.00405 * 163.16165 * 7 2 1 10 10 C 1.46496 * 120.00003 * 320.27388 * 9 7 2 11 11 C 1.50708 * 109.46853 * 269.99476 * 10 9 7 12 12 C 1.38226 * 119.99920 * 269.72787 * 11 10 9 13 13 C 1.38237 * 120.00091 * 179.78648 * 12 11 10 14 14 C 1.38239 * 119.99938 * 0.46421 * 13 12 11 15 15 C 1.38233 * 119.99521 * 359.76875 * 14 13 12 16 16 C 1.38234 * 119.99729 * 90.00015 * 11 10 9 17 17 C 1.46500 * 119.99820 * 140.26570 * 9 7 2 18 18 C 1.52996 * 109.46805 * 84.82234 * 17 9 7 19 19 H 1.08996 * 109.48393 * 54.91058 * 18 17 9 20 20 C 1.53099 * 109.48736 * 174.94475 * 18 17 9 21 21 C 1.53183 * 109.16148 * 177.59347 * 20 18 17 22 22 C 1.53172 * 109.03483 * 303.01887 * 21 20 18 23 23 C 1.53090 * 109.16621 * 56.98385 * 22 21 20 24 24 O 1.42902 * 109.41167 * 302.38707 * 23 22 21 25 25 H 0.96999 * 120.00210 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47363 * 29.99042 * 10 9 7 27 27 H 1.08999 * 109.47748 * 149.99663 * 10 9 7 28 28 H 1.08002 * 120.00294 * 359.97438 * 12 11 10 29 29 H 1.07996 * 120.00535 * 180.25331 * 13 12 11 30 30 H 1.07999 * 120.00477 * 179.78776 * 14 13 12 31 31 H 1.08005 * 119.99721 * 180.02562 * 15 14 13 32 32 H 1.07998 * 120.00440 * 359.97438 * 16 11 10 33 33 H 1.08998 * 109.47086 * 324.81984 * 17 9 7 34 34 H 1.08997 * 109.47160 * 204.82107 * 17 9 7 35 35 H 1.08999 * 109.51909 * 297.50125 * 20 18 17 36 36 H 1.08994 * 109.52105 * 57.69137 * 20 18 17 37 37 H 1.08997 * 109.53810 * 183.14874 * 21 20 18 38 38 H 1.09004 * 109.61196 * 62.92709 * 21 20 18 39 39 H 1.08994 * 109.52551 * 297.06864 * 22 21 20 40 40 H 1.09004 * 109.57156 * 176.91587 * 22 21 20 41 41 H 1.09001 * 109.47955 * 182.40458 * 23 22 21 42 42 H 1.08996 * 109.49048 * 62.37558 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3809 2.1137 -1.3936 5 1 1.5107 2.6162 0.8134 6 1 3.6012 1.4094 0.5801 7 6 2.0103 -1.2021 0.0005 8 1 1.5051 -2.1173 0.2718 9 7 3.3357 -1.2277 -0.3430 10 6 3.8231 -0.3939 -1.4445 11 6 3.7330 -1.1652 -2.7361 12 6 4.8018 -1.9335 -3.1582 13 6 4.7176 -2.6445 -4.3408 14 6 3.5682 -2.5795 -5.1060 15 6 2.5012 -1.8073 -4.6862 16 6 2.5838 -1.0998 -3.5015 17 6 4.2662 -2.0887 0.3913 18 6 4.2322 -3.4987 -0.2017 19 1 4.4366 -3.4483 -1.2712 20 6 5.2937 -4.3655 0.4808 21 6 5.2129 -5.7904 -0.0755 22 6 3.7957 -6.3307 0.1385 23 6 2.7921 -5.3881 -0.5308 24 8 2.9413 -4.0738 0.0102 25 1 -0.4850 0.8400 -0.0004 26 1 3.2132 0.5067 -1.5159 27 1 4.8606 -0.1164 -1.2587 28 1 5.7015 -1.9808 -2.5627 29 1 5.5510 -3.2480 -4.6686 30 1 3.5036 -3.1322 -6.0316 31 1 1.6030 -1.7569 -5.2838 32 1 1.7502 -0.4964 -3.1737 33 1 3.9734 -2.1286 1.4404 34 1 5.2754 -1.6849 0.3108 35 1 6.2830 -3.9528 0.2833 36 1 5.1133 -4.3833 1.5556 37 1 5.9283 -6.4264 0.4459 38 1 5.4425 -5.7808 -1.1410 39 1 3.5852 -6.3883 1.2063 40 1 3.7130 -7.3238 -0.3031 41 1 1.7790 -5.7447 -0.3453 42 1 2.9776 -5.3624 -1.6046 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207956734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:06 Heat of formation + Delta-G solvation = -21.798923 kcal Electronic energy + Delta-G solvation = -22545.029211 eV Core-core repulsion = 19489.610170 eV Total energy + Delta-G solvation = -3055.419041 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.47641 -39.81319 -37.41369 -34.36352 -33.94608 -33.07781 -31.71148 -31.52294 -28.20703 -27.29898 -25.27240 -24.02680 -23.31132 -22.44400 -21.91763 -21.01435 -18.81522 -17.68442 -17.19600 -17.02178 -16.76141 -16.07921 -15.95517 -15.61874 -15.37207 -15.21700 -14.67194 -14.52970 -14.20924 -14.12401 -13.90139 -13.53138 -13.37487 -13.26866 -12.90920 -12.65821 -12.42166 -12.17354 -12.02483 -11.84925 -11.82939 -11.71863 -11.55922 -11.43937 -11.13017 -10.60558 -10.16058 -9.67069 -9.47823 -8.63915 -8.08670 -5.52151 0.58720 0.62283 1.30022 1.40232 1.50541 2.45378 2.90385 3.11597 3.24710 3.50166 3.96189 4.02098 4.04069 4.06204 4.13788 4.24395 4.27198 4.36799 4.39154 4.43932 4.56615 4.62597 4.68484 4.74517 4.79910 4.86791 4.89223 4.92207 5.00856 5.11512 5.16377 5.23835 5.26560 5.27496 5.29505 5.51751 5.66811 5.71367 5.93173 6.04112 6.26290 6.42083 6.65987 7.07074 7.70786 8.10767 9.10681 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013530 B = 0.008739 C = 0.006520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.022432 B = 3203.077312 C = 4293.180913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.027 4.027 3 Si 0.942 3.058 4 H -0.282 1.282 5 H -0.314 1.314 6 H -0.250 1.250 7 C -0.223 4.223 8 H 0.043 0.957 9 N -0.601 5.601 10 C 0.160 3.840 11 C -0.095 4.095 12 C -0.117 4.117 13 C -0.121 4.121 14 C -0.131 4.131 15 C -0.133 4.133 16 C -0.127 4.127 17 C 0.149 3.851 18 C 0.071 3.929 19 H 0.052 0.948 20 C -0.146 4.146 21 C -0.115 4.115 22 C -0.147 4.147 23 C 0.054 3.946 24 O -0.392 6.392 25 H 0.258 0.742 26 H 0.034 0.966 27 H 0.080 0.920 28 H 0.135 0.865 29 H 0.151 0.849 30 H 0.146 0.854 31 H 0.125 0.875 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.116 -9.829 -6.290 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.221 4.221 3 Si 0.772 3.228 4 H -0.210 1.210 5 H -0.243 1.243 6 H -0.174 1.174 7 C -0.353 4.353 8 H 0.061 0.939 9 N -0.321 5.321 10 C 0.036 3.964 11 C -0.097 4.097 12 C -0.136 4.136 13 C -0.139 4.139 14 C -0.149 4.149 15 C -0.151 4.151 16 C -0.146 4.146 17 C 0.024 3.976 18 C 0.012 3.988 19 H 0.070 0.930 20 C -0.184 4.184 21 C -0.152 4.152 22 C -0.185 4.185 23 C -0.023 4.023 24 O -0.312 6.312 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.098 0.902 28 H 0.153 0.847 29 H 0.168 0.832 30 H 0.164 0.836 31 H 0.143 0.857 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.855 -9.618 -6.126 18.728 hybrid contribution -0.759 0.929 0.036 1.201 sum 14.096 -8.689 -6.090 17.643 Atomic orbital electron populations 1.69973 1.07631 1.26786 1.55931 1.26088 0.95630 1.00873 0.99548 0.85869 0.79743 0.80489 0.76735 1.21016 1.24308 1.17419 1.18644 0.85309 0.92167 1.39185 0.93912 1.44099 1.05325 1.50011 1.32709 1.20379 0.98383 0.92292 0.85348 1.20766 0.94231 0.99045 0.95704 1.21135 0.98066 0.97167 0.97218 1.21417 0.98652 0.99308 0.94543 1.21355 0.93345 0.99299 1.00926 1.21292 0.99778 0.97805 0.96186 1.21041 0.97259 1.00574 0.95721 1.21177 0.93323 0.88297 0.94771 1.22980 0.82902 0.94107 0.98854 0.92989 1.22176 0.99475 0.96141 1.00587 1.21549 0.96412 0.95772 1.01479 1.22129 0.95674 0.99328 1.01337 1.22568 0.99692 0.83670 0.96396 1.88137 1.33755 1.30160 1.79133 0.93322 0.94847 0.90227 0.84701 0.83172 0.83627 0.85732 0.90015 0.93896 0.89321 0.89089 0.91920 0.89688 0.91618 0.91875 0.89370 0.90452 0.94525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.07 13.97 21.65 0.30 -61.76 16 2 C -0.03 -1.61 5.38 84.86 0.46 -1.15 16 3 Si 0.94 47.48 24.77 68.60 1.70 49.18 16 4 H -0.28 -13.82 6.76 99.48 0.67 -13.15 16 5 H -0.31 -16.18 7.11 99.48 0.71 -15.47 16 6 H -0.25 -11.65 7.07 99.48 0.70 -10.95 16 7 C -0.22 -12.93 9.56 84.04 0.80 -12.12 16 8 H 0.04 2.87 7.09 -2.91 -0.02 2.85 16 9 N -0.60 -28.12 2.06 -706.35 -1.45 -29.57 16 10 C 0.16 6.79 4.59 85.64 0.39 7.18 16 11 C -0.09 -3.70 5.35 -19.87 -0.11 -3.81 16 12 C -0.12 -3.58 7.82 22.27 0.17 -3.40 16 13 C -0.12 -3.16 10.05 22.27 0.22 -2.93 16 14 C -0.13 -3.60 10.05 22.27 0.22 -3.38 16 15 C -0.13 -4.52 10.05 22.27 0.22 -4.30 16 16 C -0.13 -5.33 9.70 22.27 0.22 -5.11 16 17 C 0.15 5.72 5.46 86.38 0.47 6.19 16 18 C 0.07 2.45 2.89 30.63 0.09 2.53 16 19 H 0.05 1.81 6.00 -2.39 -0.01 1.80 16 20 C -0.15 -3.64 5.42 30.69 0.17 -3.47 16 21 C -0.11 -2.43 6.03 30.71 0.19 -2.25 16 22 C -0.15 -3.54 6.14 30.68 0.19 -3.35 16 23 C 0.05 1.76 6.84 72.01 0.49 2.25 16 24 O -0.39 -16.41 8.99 -148.98 -1.34 -17.75 16 25 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 26 H 0.03 1.59 3.08 -2.39 -0.01 1.58 16 27 H 0.08 2.81 7.80 -2.39 -0.02 2.79 16 28 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 29 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 30 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 31 H 0.12 3.79 8.06 -2.91 -0.02 3.77 16 32 H 0.08 4.00 8.06 -2.91 -0.02 3.97 16 33 H 0.04 1.78 8.08 -2.39 -0.02 1.76 16 34 H 0.09 2.71 7.83 -2.39 -0.02 2.69 16 35 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -72.50 329.65 4.35 -68.16 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.94 Total: 18.88 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 4.20 Total: -27.14 kcal Atomic # 7 Polarization: -90.18 SS G_CDS: -1.15 Total: -91.33 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -1.34 Total: -17.75 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 1.70 Total: 49.18 kcal Total: -72.50 4.35 -68.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207956734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.356 kcal (2) G-P(sol) polarization free energy of solvation -72.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds