Wall clock time and date at job start Mon Mar 30 2020 01:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99691 * 2 1 4 4 H 1.48498 * 109.47443 * 90.00474 * 3 2 1 5 5 H 1.48496 * 109.47442 * 329.99870 * 3 2 1 6 6 H 1.48507 * 109.47036 * 209.99847 * 3 2 1 7 7 C 1.37873 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00415 * 186.06806 * 7 2 1 9 9 C 1.50701 * 119.99774 * 6.07433 * 7 2 1 10 10 H 1.09000 * 109.47223 * 25.08891 * 9 7 2 11 11 O 1.42905 * 109.47034 * 145.08398 * 9 7 2 12 12 C 1.42899 * 113.99970 * 269.99921 * 11 9 7 13 13 C 1.52997 * 109.46996 * 180.02562 * 12 11 9 14 14 H 1.09004 * 109.50820 * 55.07754 * 13 12 11 15 15 C 1.53125 * 109.50511 * 175.19921 * 13 12 11 16 16 C 1.53120 * 109.16218 * 177.59590 * 15 13 12 17 17 C 1.53038 * 109.27852 * 302.34374 * 16 15 13 18 18 N 1.46855 * 109.52353 * 59.17902 * 17 16 15 19 19 C 1.46849 * 111.19601 * 298.26093 * 18 17 16 20 20 C 1.50693 * 109.47359 * 265.08268 * 9 7 2 21 21 C 1.38234 * 120.00467 * 276.29074 * 20 9 7 22 22 C 1.38232 * 120.00190 * 179.78505 * 21 20 9 23 23 C 1.38237 * 119.99961 * 0.43991 * 22 21 20 24 24 C 1.38238 * 120.00159 * 359.81212 * 23 22 21 25 25 C 1.38234 * 119.99711 * 359.97438 * 24 23 22 26 26 H 0.97004 * 120.00050 * 175.51273 * 1 2 3 27 27 H 1.09004 * 109.47383 * 299.99802 * 12 11 9 28 28 H 1.09003 * 109.47236 * 60.00129 * 12 11 9 29 29 H 1.08998 * 109.51877 * 297.49667 * 15 13 12 30 30 H 1.08995 * 109.52277 * 57.69165 * 15 13 12 31 31 H 1.08996 * 109.50276 * 182.40771 * 16 15 13 32 32 H 1.09003 * 109.50415 * 62.28190 * 16 15 13 33 33 H 1.08997 * 109.46456 * 299.16405 * 17 16 15 34 34 H 1.09000 * 109.46285 * 179.19535 * 17 16 15 35 35 H 1.00899 * 111.00128 * 174.16014 * 18 17 16 36 36 H 1.08999 * 109.46294 * 301.71990 * 19 18 17 37 37 H 1.08999 * 109.44770 * 181.75141 * 19 18 17 38 38 H 1.08001 * 119.99302 * 359.97438 * 21 20 9 39 39 H 1.08003 * 120.00220 * 180.27205 * 22 21 20 40 40 H 1.08001 * 120.00041 * 179.83068 * 23 22 21 41 41 H 1.07996 * 120.00113 * 179.97438 * 24 23 22 42 42 H 1.08000 * 120.00184 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 1.4000 5 1 1.4465 2.6527 -0.7000 6 1 3.5466 1.4403 -0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0800 -1.1965 0.0994 9 6 1.2574 -2.4955 -0.1370 10 1 0.3135 -2.3198 -0.6529 11 8 2.0461 -3.4203 -0.8886 12 6 1.8196 -3.3657 -2.2985 13 6 2.7115 -4.3930 -2.9984 14 1 2.5362 -5.3796 -2.5694 15 6 2.3842 -4.4195 -4.4941 16 6 3.3216 -5.4059 -5.1963 17 6 4.7728 -4.9910 -4.9436 18 7 5.0361 -4.9816 -3.4989 19 6 4.1804 -4.0075 -2.8095 20 6 0.9838 -3.0647 1.2312 21 6 1.9520 -3.8122 1.8752 22 6 1.7026 -4.3305 3.1322 23 6 0.4816 -4.1091 3.7413 24 6 -0.4886 -3.3660 3.0952 25 6 -0.2375 -2.8439 1.8401 26 1 -0.4850 -0.8375 -0.0657 27 1 0.7737 -3.5907 -2.5075 28 1 2.0570 -2.3674 -2.6662 29 1 1.3507 -4.7359 -4.6352 30 1 2.5221 -3.4236 -4.9148 31 1 3.1221 -5.3975 -6.2678 32 1 3.1560 -6.4087 -4.8024 33 1 4.9415 -3.9937 -5.3499 34 1 5.4431 -5.6994 -5.4303 35 1 6.0112 -4.8037 -3.3102 36 1 4.3518 -3.0148 -3.2258 37 1 4.4205 -4.0019 -1.7463 38 1 2.9044 -3.9885 1.3975 39 1 2.4607 -4.9108 3.6372 40 1 0.2858 -4.5164 4.7222 41 1 -1.4426 -3.1934 3.5709 42 1 -0.9956 -2.2637 1.3350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217879691.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:32 Heat of formation + Delta-G solvation = -40.895265 kcal Electronic energy + Delta-G solvation = -21497.652259 eV Core-core repulsion = 18441.405138 eV Total energy + Delta-G solvation = -3056.247120 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.83309 -38.38681 -36.44893 -33.41432 -32.23659 -31.20911 -30.26625 -30.05760 -26.37967 -25.08644 -23.59439 -23.06981 -21.80554 -21.21560 -20.38941 -19.41153 -17.21117 -16.49078 -16.03718 -15.62023 -14.84580 -14.57026 -14.33491 -13.96623 -13.81982 -13.66306 -13.50076 -13.31927 -12.85072 -12.65925 -12.50157 -12.30032 -11.90334 -11.84933 -11.29976 -11.04035 -10.88660 -10.73953 -10.43777 -10.37350 -10.23075 -10.16048 -10.07622 -9.64572 -9.53066 -8.59732 -8.37374 -8.35391 -8.12436 -7.62908 -6.52503 -4.26994 2.20378 2.23585 3.36064 3.38430 3.54297 4.29073 4.37831 4.50657 4.71966 4.97809 4.98273 5.20015 5.21337 5.30266 5.52983 5.60117 5.61815 5.67840 5.72795 5.78977 5.85038 5.99897 6.01893 6.03783 6.14295 6.17888 6.22208 6.30853 6.37233 6.41513 6.53114 6.68589 6.73022 6.88199 6.89295 7.14874 7.23359 7.34982 7.46451 7.56774 7.81108 7.91593 8.09221 8.55789 8.66595 9.45382 10.82032 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013463 B = 0.005914 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.301689 B = 4733.192181 C = 6031.119809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.026 3.974 3 Si 1.070 2.930 4 H -0.285 1.285 5 H -0.282 1.282 6 H -0.287 1.287 7 C -0.600 4.600 8 H 0.060 0.940 9 C 0.228 3.772 10 H 0.032 0.968 11 O -0.392 6.392 12 C 0.081 3.919 13 C -0.079 4.079 14 H 0.079 0.921 15 C -0.116 4.116 16 C -0.114 4.114 17 C 0.057 3.943 18 N -0.693 5.693 19 C 0.069 3.931 20 C -0.033 4.033 21 C -0.105 4.105 22 C -0.130 4.130 23 C -0.150 4.150 24 C -0.125 4.125 25 C -0.120 4.120 26 H 0.269 0.731 27 H 0.033 0.967 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.027 0.973 34 H 0.069 0.931 35 H 0.339 0.661 36 H 0.029 0.971 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.631 -8.403 -5.265 10.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.179 4.179 3 Si 0.898 3.102 4 H -0.212 1.212 5 H -0.208 1.208 6 H -0.213 1.213 7 C -0.637 4.637 8 H 0.078 0.922 9 C 0.172 3.828 10 H 0.050 0.950 11 O -0.312 6.312 12 C 0.003 3.997 13 C -0.098 4.098 14 H 0.098 0.902 15 C -0.154 4.154 16 C -0.152 4.152 17 C -0.073 4.073 18 N -0.324 5.324 19 C -0.060 4.060 20 C -0.034 4.034 21 C -0.123 4.123 22 C -0.148 4.148 23 C -0.169 4.169 24 C -0.143 4.143 25 C -0.138 4.138 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.157 0.843 36 H 0.047 0.953 37 H 0.103 0.897 38 H 0.135 0.865 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.139 -7.407 -5.005 9.851 hybrid contribution 0.408 -0.460 -0.272 0.673 sum 4.548 -7.867 -5.277 10.508 Atomic orbital electron populations 1.70834 1.06824 1.31033 1.44996 1.25903 0.96413 1.02750 0.92881 0.83525 0.74790 0.74821 0.77088 1.21195 1.20802 1.21264 1.22275 0.95596 0.90877 1.54974 0.92200 1.18830 0.91553 0.87111 0.85321 0.94999 1.87694 1.66351 1.61284 1.15848 1.22165 0.96464 0.97723 0.83346 1.21129 0.94363 1.00077 0.94247 0.90241 1.21572 0.99285 0.99457 0.95078 1.21551 0.94236 0.99927 0.99515 1.21910 0.97201 0.99215 0.88974 1.60301 1.09392 1.53714 1.08954 1.21896 0.92556 0.92029 0.99524 1.20410 0.92158 0.92458 0.98354 1.20879 0.99430 0.97753 0.94264 1.21009 0.96854 1.01155 0.95803 1.20851 0.94595 1.01795 0.99626 1.20941 0.98821 0.99081 0.95460 1.20957 0.97091 1.00040 0.95708 0.91818 0.94932 0.93536 0.91793 0.92144 0.91871 0.91248 0.95497 0.91301 0.84325 0.95297 0.89658 0.86451 0.87311 0.87433 0.87213 0.86604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.75 13.63 55.43 0.76 -24.99 16 2 C 0.03 0.72 5.45 -17.82 -0.10 0.62 16 3 Si 1.07 24.64 29.91 -169.99 -5.08 19.56 16 4 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.60 -16.36 8.62 -34.44 -0.30 -16.66 16 8 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 9 C 0.23 5.69 2.19 -29.04 -0.06 5.63 16 10 H 0.03 0.85 5.99 -51.93 -0.31 0.54 16 11 O -0.39 -8.94 8.72 -35.23 -0.31 -9.25 16 12 C 0.08 1.58 5.12 37.16 0.19 1.77 16 13 C -0.08 -1.28 2.59 -90.54 -0.23 -1.51 16 14 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 15 C -0.12 -1.55 5.29 -26.60 -0.14 -1.69 16 16 C -0.11 -1.31 6.09 -26.65 -0.16 -1.47 16 17 C 0.06 0.65 6.55 -3.83 -0.03 0.62 16 18 N -0.69 -9.14 6.85 -113.81 -0.78 -9.92 16 19 C 0.07 1.08 5.72 -3.83 -0.02 1.06 16 20 C -0.03 -0.78 4.98 -104.62 -0.52 -1.30 16 21 C -0.11 -2.27 9.35 -39.59 -0.37 -2.64 16 22 C -0.13 -2.44 10.05 -39.58 -0.40 -2.83 16 23 C -0.15 -2.70 10.05 -39.58 -0.40 -3.10 16 24 C -0.12 -2.40 10.05 -39.58 -0.40 -2.80 16 25 C -0.12 -2.66 9.54 -39.58 -0.38 -3.04 16 26 H 0.27 7.58 5.21 -40.82 -0.21 7.36 16 27 H 0.03 0.62 8.09 -51.93 -0.42 0.20 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.34 3.86 8.90 -39.29 -0.35 3.52 16 36 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 1.49 7.85 -51.93 -0.41 1.08 16 38 H 0.12 2.52 7.67 -52.49 -0.40 2.12 16 39 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 41 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.12 2.63 6.86 -52.49 -0.36 2.27 16 LS Contribution 337.87 15.07 5.09 5.09 Total: -1.00 -29.26 337.87 -10.38 -39.64 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.74 Total: 7.22 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: -3.31 Total: -27.35 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.02 Total: -34.91 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.31 Total: -9.25 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.08 Total: 19.56 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.26 -10.38 -39.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217879691.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.253 kcal (2) G-P(sol) polarization free energy of solvation -29.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds