Wall clock time and date at job start Mon Mar 30 2020 01:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99691 * 2 1 4 4 H 1.48498 * 109.47443 * 90.00474 * 3 2 1 5 5 H 1.48496 * 109.47442 * 329.99870 * 3 2 1 6 6 H 1.48507 * 109.47036 * 209.99847 * 3 2 1 7 7 C 1.37873 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00415 * 186.06806 * 7 2 1 9 9 C 1.50701 * 119.99774 * 6.07433 * 7 2 1 10 10 H 1.09000 * 109.47223 * 25.08891 * 9 7 2 11 11 O 1.42905 * 109.47034 * 145.08398 * 9 7 2 12 12 C 1.42899 * 113.99970 * 269.99921 * 11 9 7 13 13 C 1.52997 * 109.46996 * 180.02562 * 12 11 9 14 14 H 1.09004 * 109.50820 * 55.07754 * 13 12 11 15 15 C 1.53125 * 109.50511 * 175.19921 * 13 12 11 16 16 C 1.53120 * 109.16218 * 177.59590 * 15 13 12 17 17 C 1.53038 * 109.27852 * 302.34374 * 16 15 13 18 18 N 1.46855 * 109.52353 * 59.17902 * 17 16 15 19 19 C 1.46849 * 111.19601 * 298.26093 * 18 17 16 20 20 C 1.50693 * 109.47359 * 265.08268 * 9 7 2 21 21 C 1.38234 * 120.00467 * 276.29074 * 20 9 7 22 22 C 1.38232 * 120.00190 * 179.78505 * 21 20 9 23 23 C 1.38237 * 119.99961 * 0.43991 * 22 21 20 24 24 C 1.38238 * 120.00159 * 359.81212 * 23 22 21 25 25 C 1.38234 * 119.99711 * 359.97438 * 24 23 22 26 26 H 0.97004 * 120.00050 * 175.51273 * 1 2 3 27 27 H 1.09004 * 109.47383 * 299.99802 * 12 11 9 28 28 H 1.09003 * 109.47236 * 60.00129 * 12 11 9 29 29 H 1.08998 * 109.51877 * 297.49667 * 15 13 12 30 30 H 1.08995 * 109.52277 * 57.69165 * 15 13 12 31 31 H 1.08996 * 109.50276 * 182.40771 * 16 15 13 32 32 H 1.09003 * 109.50415 * 62.28190 * 16 15 13 33 33 H 1.08997 * 109.46456 * 299.16405 * 17 16 15 34 34 H 1.09000 * 109.46285 * 179.19535 * 17 16 15 35 35 H 1.00899 * 111.00128 * 174.16014 * 18 17 16 36 36 H 1.08999 * 109.46294 * 301.71990 * 19 18 17 37 37 H 1.08999 * 109.44770 * 181.75141 * 19 18 17 38 38 H 1.08001 * 119.99302 * 359.97438 * 21 20 9 39 39 H 1.08003 * 120.00220 * 180.27205 * 22 21 20 40 40 H 1.08001 * 120.00041 * 179.83068 * 23 22 21 41 41 H 1.07996 * 120.00113 * 179.97438 * 24 23 22 42 42 H 1.08000 * 120.00184 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 1.4000 5 1 1.4465 2.6527 -0.7000 6 1 3.5466 1.4403 -0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0800 -1.1965 0.0994 9 6 1.2574 -2.4955 -0.1370 10 1 0.3135 -2.3198 -0.6529 11 8 2.0461 -3.4203 -0.8886 12 6 1.8196 -3.3657 -2.2985 13 6 2.7115 -4.3930 -2.9984 14 1 2.5362 -5.3796 -2.5694 15 6 2.3842 -4.4195 -4.4941 16 6 3.3216 -5.4059 -5.1963 17 6 4.7728 -4.9910 -4.9436 18 7 5.0361 -4.9816 -3.4989 19 6 4.1804 -4.0075 -2.8095 20 6 0.9838 -3.0647 1.2312 21 6 1.9520 -3.8122 1.8752 22 6 1.7026 -4.3305 3.1322 23 6 0.4816 -4.1091 3.7413 24 6 -0.4886 -3.3660 3.0952 25 6 -0.2375 -2.8439 1.8401 26 1 -0.4850 -0.8375 -0.0657 27 1 0.7737 -3.5907 -2.5075 28 1 2.0570 -2.3674 -2.6662 29 1 1.3507 -4.7359 -4.6352 30 1 2.5221 -3.4236 -4.9148 31 1 3.1221 -5.3975 -6.2678 32 1 3.1560 -6.4087 -4.8024 33 1 4.9415 -3.9937 -5.3499 34 1 5.4431 -5.6994 -5.4303 35 1 6.0112 -4.8037 -3.3102 36 1 4.3518 -3.0148 -3.2258 37 1 4.4205 -4.0019 -1.7463 38 1 2.9044 -3.9885 1.3975 39 1 2.4607 -4.9108 3.6372 40 1 0.2858 -4.5164 4.7222 41 1 -1.4426 -3.1934 3.5709 42 1 -0.9956 -2.2637 1.3350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217879691.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:31 Heat of formation + Delta-G solvation = -57.969620 kcal Electronic energy + Delta-G solvation = -21498.392658 eV Core-core repulsion = 18441.405138 eV Total energy + Delta-G solvation = -3056.987520 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.37800 -39.74893 -38.10466 -35.31344 -33.60015 -32.52284 -31.78983 -31.63522 -28.23642 -26.63430 -25.04489 -24.64879 -23.34350 -22.50788 -22.09924 -20.62180 -19.22959 -17.85881 -17.49188 -17.26654 -16.43727 -16.07740 -15.72449 -15.55750 -15.43545 -15.12596 -14.90988 -14.78907 -14.21537 -14.10351 -13.97695 -13.76880 -13.52895 -13.38064 -12.85951 -12.68352 -12.42916 -12.02537 -12.00486 -11.91886 -11.74961 -11.61118 -11.42491 -11.36829 -11.22188 -10.67006 -10.20164 -9.72271 -9.44371 -9.40684 -8.68798 -6.45811 0.59465 0.63256 1.46778 1.54665 1.72917 2.46535 2.84921 3.06964 3.14606 3.24482 3.80205 3.89176 3.98651 4.10378 4.13494 4.21085 4.30378 4.34347 4.39759 4.43895 4.55556 4.60674 4.66348 4.68410 4.76274 4.83162 4.85182 4.93540 5.00566 5.01039 5.12998 5.22892 5.26063 5.30748 5.42162 5.66172 5.70791 5.80470 5.92590 5.95640 6.03242 6.24467 6.46810 6.47550 6.63611 7.34768 8.64329 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013463 B = 0.005914 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.301689 B = 4733.192181 C = 6031.119809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.018 4.018 3 Si 1.111 2.889 4 H -0.275 1.275 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.611 4.611 8 H 0.044 0.956 9 C 0.233 3.767 10 H 0.005 0.995 11 O -0.398 6.398 12 C 0.079 3.921 13 C -0.070 4.070 14 H 0.072 0.928 15 C -0.114 4.114 16 C -0.110 4.110 17 C 0.053 3.947 18 N -0.694 5.694 19 C 0.077 3.923 20 C -0.066 4.066 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.137 4.137 24 C -0.123 4.123 25 C -0.143 4.143 26 H 0.261 0.739 27 H 0.031 0.969 28 H 0.026 0.974 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.094 0.906 35 H 0.350 0.650 36 H 0.019 0.981 37 H 0.060 0.940 38 H 0.108 0.892 39 H 0.147 0.853 40 H 0.154 0.846 41 H 0.140 0.860 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.515 -9.682 -4.601 12.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.218 4.218 3 Si 0.933 3.067 4 H -0.200 1.200 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.649 4.649 8 H 0.062 0.938 9 C 0.177 3.823 10 H 0.023 0.977 11 O -0.318 6.318 12 C 0.001 3.999 13 C -0.089 4.089 14 H 0.091 0.909 15 C -0.152 4.152 16 C -0.148 4.148 17 C -0.076 4.076 18 N -0.326 5.326 19 C -0.053 4.053 20 C -0.067 4.067 21 C -0.141 4.141 22 C -0.140 4.140 23 C -0.155 4.155 24 C -0.141 4.141 25 C -0.161 4.161 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.113 0.887 35 H 0.169 0.831 36 H 0.037 0.963 37 H 0.079 0.921 38 H 0.126 0.874 39 H 0.164 0.836 40 H 0.172 0.828 41 H 0.158 0.842 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.035 -8.714 -4.348 10.963 hybrid contribution 0.118 -0.179 -0.449 0.497 sum 5.153 -8.894 -4.797 11.343 Atomic orbital electron populations 1.70915 1.07496 1.30608 1.46889 1.27182 0.96562 1.05913 0.92117 0.83009 0.74312 0.71554 0.77819 1.20027 1.20233 1.19844 1.22436 0.94916 0.92464 1.55044 0.93760 1.18638 0.90079 0.87122 0.86486 0.97716 1.87677 1.66112 1.60632 1.17388 1.22339 0.97468 0.97979 0.82067 1.21069 0.93917 0.98077 0.95884 0.90918 1.21586 1.00503 1.00277 0.92823 1.21564 0.93524 0.98899 1.00799 1.22052 0.97811 1.00087 0.87644 1.60276 1.09740 1.52353 1.10224 1.21666 0.92859 0.92334 0.98427 1.20377 0.93770 0.94735 0.97787 1.20934 0.98708 0.98542 0.95894 1.21419 0.98193 1.00078 0.94351 1.21372 0.93310 0.99843 1.00960 1.21315 1.00616 0.98130 0.94063 1.20983 0.96471 1.01219 0.97440 0.92767 0.95030 0.95569 0.91074 0.92345 0.89212 0.91327 0.95356 0.88730 0.83088 0.96281 0.92135 0.87377 0.83564 0.82809 0.84170 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.89 13.63 21.44 0.29 -54.60 16 2 C -0.02 -1.00 5.45 84.65 0.46 -0.54 16 3 Si 1.11 50.48 29.91 68.60 2.05 52.54 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.61 -35.02 8.62 25.60 0.22 -34.79 16 8 H 0.04 2.60 7.82 -2.91 -0.02 2.58 16 9 C 0.23 12.40 2.19 29.10 0.06 12.47 16 10 H 0.01 0.29 5.99 -2.39 -0.01 0.28 16 11 O -0.40 -19.35 8.72 -148.98 -1.30 -20.64 16 12 C 0.08 3.29 5.12 71.98 0.37 3.66 16 13 C -0.07 -2.34 2.59 -10.74 -0.03 -2.37 16 14 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 15 C -0.11 -2.99 5.29 30.68 0.16 -2.83 16 16 C -0.11 -2.28 6.09 30.65 0.19 -2.10 16 17 C 0.05 1.10 6.55 86.32 0.57 1.66 16 18 N -0.69 -17.65 6.85 -513.99 -3.52 -21.17 16 19 C 0.08 2.48 5.72 86.33 0.49 2.97 16 20 C -0.07 -3.24 4.98 -19.87 -0.10 -3.34 16 21 C -0.12 -5.34 9.35 22.27 0.21 -5.13 16 22 C -0.12 -4.27 10.05 22.27 0.22 -4.05 16 23 C -0.14 -4.41 10.05 22.27 0.22 -4.19 16 24 C -0.12 -4.52 10.05 22.27 0.22 -4.30 16 25 C -0.14 -6.52 9.54 22.27 0.21 -6.31 16 26 H 0.26 15.59 5.21 -92.71 -0.48 15.11 16 27 H 0.03 1.30 8.09 -2.38 -0.02 1.28 16 28 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.35 7.60 8.90 -89.69 -0.80 6.80 16 36 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.06 2.23 7.85 -2.39 -0.02 2.21 16 38 H 0.11 4.79 7.67 -2.91 -0.02 4.76 16 39 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 40 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 41 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 42 H 0.10 4.67 6.86 -2.91 -0.02 4.65 16 Total: -1.00 -66.45 337.87 1.49 -64.96 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.48 Total: 28.09 kcal Atomic # 6 Polarization: -52.66 SS G_CDS: 3.49 Total: -49.17 kcal Atomic # 7 Polarization: -72.54 SS G_CDS: -3.23 Total: -75.76 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -1.30 Total: -20.64 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 2.05 Total: 52.54 kcal Total: -66.45 1.49 -64.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217879691.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.989 kcal (2) G-P(sol) polarization free energy of solvation -66.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds