Wall clock time and date at job start Mon Mar 30 2020 01:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00102 * 2 1 4 4 H 1.48495 * 109.47303 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47522 * 119.99913 * 3 2 1 6 6 H 1.48505 * 109.46851 * 239.99670 * 3 2 1 7 7 C 1.37879 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99565 * 183.32457 * 7 2 1 9 9 C 1.50702 * 120.00258 * 3.33498 * 7 2 1 10 10 H 1.09002 * 109.46400 * 332.26528 * 9 7 2 11 11 O 1.42894 * 109.47177 * 212.27086 * 9 7 2 12 12 C 1.42892 * 114.00387 * 89.99451 * 11 9 7 13 13 C 1.53001 * 109.47486 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.50727 * 305.00415 * 13 12 11 15 15 C 1.53120 * 109.50415 * 184.91922 * 13 12 11 16 16 C 1.53127 * 109.15851 * 182.44268 * 15 13 12 17 17 C 1.53042 * 109.30517 * 57.59871 * 16 15 13 18 18 N 1.46843 * 109.52367 * 300.83876 * 17 16 15 19 19 C 1.46845 * 111.19753 * 61.74650 * 18 17 16 20 20 C 1.50699 * 109.47355 * 92.26546 * 9 7 2 21 21 C 1.38243 * 119.99600 * 82.43630 * 20 9 7 22 22 C 1.38237 * 119.99506 * 179.76672 * 21 20 9 23 23 C 1.38234 * 119.99936 * 0.48164 * 22 21 20 24 24 C 1.38234 * 120.00523 * 359.79617 * 23 22 21 25 25 C 1.38232 * 120.00114 * 262.71210 * 20 9 7 26 26 H 0.97001 * 119.99906 * 174.80280 * 1 2 3 27 27 H 1.09002 * 109.47106 * 300.00140 * 12 11 9 28 28 H 1.09004 * 109.47619 * 59.99959 * 12 11 9 29 29 H 1.09000 * 109.52961 * 302.31443 * 15 13 12 30 30 H 1.09003 * 109.52078 * 62.50339 * 15 13 12 31 31 H 1.08997 * 109.47228 * 297.66232 * 16 15 13 32 32 H 1.09000 * 109.53891 * 177.58082 * 16 15 13 33 33 H 1.09003 * 109.45984 * 180.82466 * 17 16 15 34 34 H 1.09001 * 109.45265 * 60.85823 * 17 16 15 35 35 H 1.00903 * 110.99325 * 185.84020 * 18 17 16 36 36 H 1.08992 * 109.46240 * 178.23806 * 19 18 17 37 37 H 1.08998 * 109.46312 * 58.27018 * 19 18 17 38 38 H 1.07992 * 120.00157 * 0.02562 * 21 20 9 39 39 H 1.07999 * 119.99961 * 180.25213 * 22 21 20 40 40 H 1.07999 * 119.99761 * 179.76811 * 23 22 21 41 41 H 1.07995 * 120.00672 * 179.97438 * 24 23 22 42 42 H 1.08005 * 120.00183 * 0.02562 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0832 -1.1948 0.0548 9 6 1.2529 -2.4981 -0.0748 10 1 0.2606 -2.3709 0.3579 11 8 1.9648 -3.5009 0.6529 12 6 1.5958 -3.5916 2.0303 13 6 2.4161 -4.6918 2.7068 14 1 2.2908 -5.6270 2.1611 15 6 1.9364 -4.8734 4.1495 16 6 2.8022 -5.9326 4.8375 17 6 4.2697 -5.5018 4.7799 18 7 4.6799 -5.3430 3.3790 19 6 3.8948 -4.2971 2.7111 20 6 1.1225 -2.9203 -1.5156 21 6 2.1650 -3.5797 -2.1396 22 6 2.0435 -3.9712 -3.4598 23 6 0.8834 -3.6946 -4.1588 24 6 -0.1568 -3.0302 -3.5365 25 6 -0.0373 -2.6432 -2.2147 26 1 -0.4850 -0.8366 -0.0761 27 1 1.7902 -2.6385 2.5221 28 1 0.5350 -3.8305 2.1075 29 1 2.0246 -3.9279 4.6846 30 1 0.8955 -5.1970 4.1492 31 1 2.6830 -6.8876 4.3259 32 1 2.4938 -6.0360 5.8778 33 1 4.8899 -6.2612 5.2561 34 1 4.3904 -4.5536 5.3037 35 1 5.6684 -5.1519 3.3112 36 1 4.2428 -4.1813 1.6848 37 1 4.0175 -3.3544 3.2445 38 1 3.0727 -3.7926 -1.5946 39 1 2.8564 -4.4899 -3.9462 40 1 0.7900 -3.9972 -5.1913 41 1 -1.0630 -2.8137 -4.0826 42 1 -0.8499 -2.1238 -1.7286 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217879692.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:35 Heat of formation + Delta-G solvation = -40.684758 kcal Electronic energy + Delta-G solvation = -21492.540833 eV Core-core repulsion = 18436.302841 eV Total energy + Delta-G solvation = -3056.237992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.83473 -38.39212 -36.45447 -33.41281 -32.23520 -31.20772 -30.27495 -30.06953 -26.37136 -25.08147 -23.59524 -23.07192 -21.81096 -21.21976 -20.40792 -19.40913 -17.20182 -16.49290 -16.04358 -15.62011 -14.84061 -14.56812 -14.33554 -13.97305 -13.81061 -13.66600 -13.50439 -13.31984 -12.85626 -12.65992 -12.50665 -12.30055 -11.89486 -11.86489 -11.29573 -11.04095 -10.89664 -10.73953 -10.43927 -10.38353 -10.21406 -10.15741 -10.07978 -9.63690 -9.55381 -8.61468 -8.35573 -8.33364 -8.13606 -7.64951 -6.51270 -4.26733 2.19060 2.22383 3.35917 3.38779 3.56505 4.29152 4.38457 4.49912 4.71758 4.97977 4.98391 5.20757 5.21267 5.30449 5.53062 5.59295 5.61726 5.67038 5.72783 5.78248 5.85148 5.99997 6.02043 6.04057 6.14520 6.16941 6.22316 6.31270 6.36474 6.40672 6.53105 6.68983 6.72889 6.88048 6.88548 7.14878 7.22200 7.34137 7.46433 7.55813 7.80211 7.91559 8.08312 8.55790 8.66720 9.45697 10.82631 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013744 B = 0.005821 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.765986 B = 4808.749523 C = 6036.689008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.027 3.973 3 Si 1.068 2.932 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.285 1.285 7 C -0.600 4.600 8 H 0.059 0.941 9 C 0.228 3.772 10 H 0.032 0.968 11 O -0.391 6.391 12 C 0.081 3.919 13 C -0.079 4.079 14 H 0.079 0.921 15 C -0.116 4.116 16 C -0.114 4.114 17 C 0.057 3.943 18 N -0.693 5.693 19 C 0.069 3.931 20 C -0.034 4.034 21 C -0.103 4.103 22 C -0.130 4.130 23 C -0.150 4.150 24 C -0.125 4.125 25 C -0.121 4.121 26 H 0.269 0.731 27 H 0.047 0.953 28 H 0.033 0.967 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.027 0.973 35 H 0.339 0.661 36 H 0.085 0.915 37 H 0.029 0.971 38 H 0.118 0.882 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.150 -8.923 4.340 10.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.179 4.179 3 Si 0.895 3.105 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.638 4.638 8 H 0.077 0.923 9 C 0.172 3.828 10 H 0.050 0.950 11 O -0.311 6.311 12 C 0.003 3.997 13 C -0.098 4.098 14 H 0.098 0.902 15 C -0.154 4.154 16 C -0.152 4.152 17 C -0.073 4.073 18 N -0.324 5.324 19 C -0.060 4.060 20 C -0.035 4.035 21 C -0.122 4.122 22 C -0.148 4.148 23 C -0.168 4.168 24 C -0.143 4.143 25 C -0.139 4.139 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.157 0.843 36 H 0.103 0.897 37 H 0.047 0.953 38 H 0.136 0.864 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.680 -7.895 4.109 9.631 hybrid contribution 0.391 -0.507 0.297 0.706 sum 4.071 -8.403 4.405 10.324 Atomic orbital electron populations 1.70860 1.06818 1.30851 1.45198 1.25893 0.96409 1.02729 0.92838 0.83560 0.75031 0.75119 0.76795 1.20579 1.21292 1.21143 1.22271 0.95322 0.90973 1.55188 0.92254 1.18834 0.92916 0.86308 0.84768 0.94986 1.87681 1.65391 1.58414 1.19623 1.22167 0.96048 0.97181 0.84281 1.21128 0.94320 0.99412 0.94954 0.90248 1.21572 0.99267 0.99019 0.95528 1.21551 0.94284 0.99428 0.99968 1.21909 0.96715 0.99340 0.89335 1.60301 1.08297 1.49122 1.14632 1.21895 0.93411 0.91139 0.99556 1.20434 0.92270 0.92679 0.98098 1.20884 0.98938 0.98379 0.93953 1.21015 0.97470 1.01371 0.94984 1.20853 0.94652 1.02187 0.99120 1.20942 0.98515 0.99817 0.95042 1.20958 0.97891 1.00432 0.94610 0.91896 0.93505 0.94921 0.92149 0.91784 0.91259 0.91868 0.91295 0.95495 0.84329 0.89664 0.95300 0.86441 0.87287 0.87413 0.87194 0.86654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.81 13.62 55.43 0.75 -25.05 16 2 C 0.03 0.73 5.46 -17.82 -0.10 0.64 16 3 Si 1.07 24.68 29.90 -169.99 -5.08 19.59 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 6 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.60 -16.37 8.62 -34.44 -0.30 -16.67 16 8 H 0.06 1.66 7.82 -52.48 -0.41 1.25 16 9 C 0.23 5.70 2.22 -29.03 -0.06 5.63 16 10 H 0.03 0.85 5.89 -51.93 -0.31 0.55 16 11 O -0.39 -8.94 8.77 -35.23 -0.31 -9.25 16 12 C 0.08 1.60 5.12 37.16 0.19 1.79 16 13 C -0.08 -1.28 2.59 -90.54 -0.23 -1.52 16 14 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 15 C -0.12 -1.56 5.29 -26.60 -0.14 -1.70 16 16 C -0.11 -1.32 6.09 -26.64 -0.16 -1.48 16 17 C 0.06 0.65 6.55 -3.83 -0.03 0.62 16 18 N -0.69 -9.15 6.85 -113.82 -0.78 -9.93 16 19 C 0.07 1.08 5.72 -3.83 -0.02 1.06 16 20 C -0.03 -0.80 4.97 -104.62 -0.52 -1.32 16 21 C -0.10 -2.23 9.36 -39.58 -0.37 -2.60 16 22 C -0.13 -2.43 10.05 -39.58 -0.40 -2.83 16 23 C -0.15 -2.67 10.05 -39.58 -0.40 -3.07 16 24 C -0.13 -2.39 10.05 -39.58 -0.40 -2.78 16 25 C -0.12 -2.67 9.60 -39.58 -0.38 -3.05 16 26 H 0.27 7.58 5.44 -40.82 -0.22 7.36 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.03 0.63 8.09 -51.93 -0.42 0.21 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.34 3.87 8.90 -39.29 -0.35 3.52 16 36 H 0.08 1.49 7.85 -51.93 -0.41 1.08 16 37 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.12 2.52 7.70 -52.49 -0.40 2.11 16 39 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 41 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 42 H 0.12 2.60 7.05 -52.48 -0.37 2.23 16 LS Contribution 338.37 15.07 5.10 5.10 Total: -1.00 -29.28 338.37 -10.39 -39.68 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -6.76 Total: 7.14 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: -3.32 Total: -27.28 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: -0.02 Total: -34.98 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.31 Total: -9.25 kcal Atomic # 14 Polarization: 24.68 SS G_CDS: -5.08 Total: 19.59 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.28 -10.39 -39.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217879692.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.009 kcal (2) G-P(sol) polarization free energy of solvation -29.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds