Wall clock time and date at job start Mon Mar 30 2020 01:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00102 * 2 1 4 4 H 1.48495 * 109.47303 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47522 * 119.99913 * 3 2 1 6 6 H 1.48505 * 109.46851 * 239.99670 * 3 2 1 7 7 C 1.37879 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99565 * 183.32457 * 7 2 1 9 9 C 1.50702 * 120.00258 * 3.33498 * 7 2 1 10 10 H 1.09002 * 109.46400 * 332.26528 * 9 7 2 11 11 O 1.42894 * 109.47177 * 212.27086 * 9 7 2 12 12 C 1.42892 * 114.00387 * 89.99451 * 11 9 7 13 13 C 1.53001 * 109.47486 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.50727 * 305.00415 * 13 12 11 15 15 C 1.53120 * 109.50415 * 184.91922 * 13 12 11 16 16 C 1.53127 * 109.15851 * 182.44268 * 15 13 12 17 17 C 1.53042 * 109.30517 * 57.59871 * 16 15 13 18 18 N 1.46843 * 109.52367 * 300.83876 * 17 16 15 19 19 C 1.46845 * 111.19753 * 61.74650 * 18 17 16 20 20 C 1.50699 * 109.47355 * 92.26546 * 9 7 2 21 21 C 1.38243 * 119.99600 * 82.43630 * 20 9 7 22 22 C 1.38237 * 119.99506 * 179.76672 * 21 20 9 23 23 C 1.38234 * 119.99936 * 0.48164 * 22 21 20 24 24 C 1.38234 * 120.00523 * 359.79617 * 23 22 21 25 25 C 1.38232 * 120.00114 * 262.71210 * 20 9 7 26 26 H 0.97001 * 119.99906 * 174.80280 * 1 2 3 27 27 H 1.09002 * 109.47106 * 300.00140 * 12 11 9 28 28 H 1.09004 * 109.47619 * 59.99959 * 12 11 9 29 29 H 1.09000 * 109.52961 * 302.31443 * 15 13 12 30 30 H 1.09003 * 109.52078 * 62.50339 * 15 13 12 31 31 H 1.08997 * 109.47228 * 297.66232 * 16 15 13 32 32 H 1.09000 * 109.53891 * 177.58082 * 16 15 13 33 33 H 1.09003 * 109.45984 * 180.82466 * 17 16 15 34 34 H 1.09001 * 109.45265 * 60.85823 * 17 16 15 35 35 H 1.00903 * 110.99325 * 185.84020 * 18 17 16 36 36 H 1.08992 * 109.46240 * 178.23806 * 19 18 17 37 37 H 1.08998 * 109.46312 * 58.27018 * 19 18 17 38 38 H 1.07992 * 120.00157 * 0.02562 * 21 20 9 39 39 H 1.07999 * 119.99961 * 180.25213 * 22 21 20 40 40 H 1.07999 * 119.99761 * 179.76811 * 23 22 21 41 41 H 1.07995 * 120.00672 * 179.97438 * 24 23 22 42 42 H 1.08005 * 120.00183 * 0.02562 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0832 -1.1948 0.0548 9 6 1.2529 -2.4981 -0.0748 10 1 0.2606 -2.3709 0.3579 11 8 1.9648 -3.5009 0.6529 12 6 1.5958 -3.5916 2.0303 13 6 2.4161 -4.6918 2.7068 14 1 2.2908 -5.6270 2.1611 15 6 1.9364 -4.8734 4.1495 16 6 2.8022 -5.9326 4.8375 17 6 4.2697 -5.5018 4.7799 18 7 4.6799 -5.3430 3.3790 19 6 3.8948 -4.2971 2.7111 20 6 1.1225 -2.9203 -1.5156 21 6 2.1650 -3.5797 -2.1396 22 6 2.0435 -3.9712 -3.4598 23 6 0.8834 -3.6946 -4.1588 24 6 -0.1568 -3.0302 -3.5365 25 6 -0.0373 -2.6432 -2.2147 26 1 -0.4850 -0.8366 -0.0761 27 1 1.7902 -2.6385 2.5221 28 1 0.5350 -3.8305 2.1075 29 1 2.0246 -3.9279 4.6846 30 1 0.8955 -5.1970 4.1492 31 1 2.6830 -6.8876 4.3259 32 1 2.4938 -6.0360 5.8778 33 1 4.8899 -6.2612 5.2561 34 1 4.3904 -4.5536 5.3037 35 1 5.6684 -5.1519 3.3112 36 1 4.2428 -4.1813 1.6848 37 1 4.0175 -3.3544 3.2445 38 1 3.0727 -3.7926 -1.5946 39 1 2.8564 -4.4899 -3.9462 40 1 0.7900 -3.9972 -5.1913 41 1 -1.0630 -2.8137 -4.0826 42 1 -0.8499 -2.1238 -1.7286 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217879692.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:34 Heat of formation + Delta-G solvation = -57.806371 kcal Electronic energy + Delta-G solvation = -21493.283282 eV Core-core repulsion = 18436.302841 eV Total energy + Delta-G solvation = -3056.980441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.38053 -39.75252 -38.11121 -35.31394 -33.60362 -32.52565 -31.79531 -31.63824 -28.22573 -26.63729 -25.05013 -24.65312 -23.34356 -22.51550 -22.11178 -20.62484 -19.21997 -17.86144 -17.49783 -17.26533 -16.43230 -16.07382 -15.72710 -15.56314 -15.43958 -15.12747 -14.90846 -14.79496 -14.22013 -14.10826 -13.97390 -13.77355 -13.53383 -13.38849 -12.84537 -12.69785 -12.42946 -12.03000 -12.00320 -11.93125 -11.76030 -11.58691 -11.46524 -11.36985 -11.21992 -10.66254 -10.20062 -9.72489 -9.44744 -9.40666 -8.68491 -6.45881 0.59051 0.62874 1.46927 1.54089 1.73858 2.46874 2.84655 3.06681 3.15006 3.24243 3.79682 3.88715 3.98321 4.10244 4.13014 4.21086 4.30297 4.34002 4.39332 4.43830 4.55251 4.60265 4.66211 4.68221 4.75880 4.83053 4.84822 4.93644 5.00317 5.00596 5.12603 5.22683 5.25819 5.30284 5.41734 5.66029 5.70485 5.80104 5.92618 5.94821 6.02866 6.24300 6.46587 6.47321 6.63138 7.34823 8.64572 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013744 B = 0.005821 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.765986 B = 4808.749523 C = 6036.689008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.017 4.017 3 Si 1.109 2.891 4 H -0.278 1.278 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.611 4.611 8 H 0.045 0.955 9 C 0.233 3.767 10 H 0.005 0.995 11 O -0.397 6.397 12 C 0.080 3.920 13 C -0.070 4.070 14 H 0.073 0.927 15 C -0.114 4.114 16 C -0.110 4.110 17 C 0.053 3.947 18 N -0.694 5.694 19 C 0.077 3.923 20 C -0.067 4.067 21 C -0.121 4.121 22 C -0.123 4.123 23 C -0.136 4.136 24 C -0.123 4.123 25 C -0.143 4.143 26 H 0.260 0.740 27 H 0.025 0.975 28 H 0.031 0.969 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.028 0.972 35 H 0.351 0.649 36 H 0.060 0.940 37 H 0.019 0.981 38 H 0.108 0.892 39 H 0.147 0.853 40 H 0.155 0.845 41 H 0.141 0.859 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.147 -10.161 3.509 11.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.217 4.217 3 Si 0.930 3.070 4 H -0.204 1.204 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.649 4.649 8 H 0.063 0.937 9 C 0.176 3.824 10 H 0.022 0.978 11 O -0.317 6.317 12 C 0.002 3.998 13 C -0.089 4.089 14 H 0.091 0.909 15 C -0.152 4.152 16 C -0.148 4.148 17 C -0.076 4.076 18 N -0.326 5.326 19 C -0.053 4.053 20 C -0.068 4.068 21 C -0.139 4.139 22 C -0.140 4.140 23 C -0.154 4.154 24 C -0.141 4.141 25 C -0.162 4.162 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.046 0.954 35 H 0.169 0.831 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.126 0.874 39 H 0.165 0.835 40 H 0.172 0.828 41 H 0.159 0.841 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.691 -9.164 3.289 10.807 hybrid contribution 0.068 -0.234 0.516 0.571 sum 4.759 -9.398 3.805 11.201 Atomic orbital electron populations 1.70940 1.07514 1.30413 1.47146 1.27167 0.96548 1.05884 0.92077 0.83047 0.74377 0.71712 0.77859 1.20350 1.19618 1.19887 1.22444 0.94653 0.92517 1.55266 0.93713 1.18649 0.91172 0.86253 0.86285 0.97759 1.87666 1.65336 1.57704 1.21029 1.22331 0.96872 0.97614 0.82959 1.21068 0.94201 0.97253 0.96416 0.90886 1.21587 1.00234 0.99926 0.93446 1.21564 0.93783 0.98249 1.01186 1.22051 0.97176 1.00256 0.88108 1.60275 1.08798 1.47570 1.15919 1.21663 0.93467 0.91648 0.98490 1.20384 0.94008 0.95169 0.97193 1.20937 0.98110 0.99232 0.95660 1.21424 0.98947 1.00151 0.93523 1.21376 0.93203 0.99898 1.00936 1.21318 1.00281 0.98826 0.93660 1.20984 0.97212 1.01629 0.96357 0.92873 0.95682 0.95069 0.92408 0.91079 0.91311 0.89211 0.88697 0.95377 0.83074 0.92097 0.96320 0.87396 0.83550 0.82780 0.84112 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.12 13.62 21.45 0.29 -54.83 16 2 C -0.02 -0.96 5.46 84.66 0.46 -0.50 16 3 Si 1.11 50.52 29.90 68.60 2.05 52.57 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.61 -35.03 8.62 25.60 0.22 -34.81 16 8 H 0.04 2.62 7.82 -2.91 -0.02 2.60 16 9 C 0.23 12.40 2.22 29.10 0.06 12.46 16 10 H 0.00 0.27 5.89 -2.39 -0.01 0.25 16 11 O -0.40 -19.36 8.77 -148.98 -1.31 -20.66 16 12 C 0.08 3.35 5.12 71.98 0.37 3.72 16 13 C -0.07 -2.35 2.59 -10.74 -0.03 -2.37 16 14 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 15 C -0.11 -3.02 5.29 30.68 0.16 -2.86 16 16 C -0.11 -2.30 6.09 30.65 0.19 -2.11 16 17 C 0.05 1.10 6.55 86.33 0.57 1.67 16 18 N -0.69 -17.67 6.85 -514.01 -3.52 -21.19 16 19 C 0.08 2.49 5.72 86.33 0.49 2.98 16 20 C -0.07 -3.27 4.97 -19.86 -0.10 -3.37 16 21 C -0.12 -5.26 9.36 22.27 0.21 -5.05 16 22 C -0.12 -4.24 10.05 22.27 0.22 -4.02 16 23 C -0.14 -4.34 10.05 22.27 0.22 -4.12 16 24 C -0.12 -4.46 10.05 22.27 0.22 -4.23 16 25 C -0.14 -6.51 9.60 22.27 0.21 -6.29 16 26 H 0.26 15.60 5.44 -92.71 -0.50 15.10 16 27 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.03 1.29 8.09 -2.38 -0.02 1.27 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.35 7.60 8.90 -89.69 -0.80 6.80 16 36 H 0.06 2.24 7.85 -2.39 -0.02 2.22 16 37 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.11 4.76 7.70 -2.91 -0.02 4.74 16 39 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 40 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 41 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 42 H 0.10 4.62 7.05 -2.91 -0.02 4.60 16 Total: -1.00 -66.58 338.37 1.47 -65.12 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 0.45 Total: 27.89 kcal Atomic # 6 Polarization: -52.39 SS G_CDS: 3.49 Total: -48.89 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -3.23 Total: -76.02 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -1.31 Total: -20.66 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 2.05 Total: 52.57 kcal Total: -66.58 1.47 -65.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217879692.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.311 kcal (2) G-P(sol) polarization free energy of solvation -66.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds