Wall clock time and date at job start Mon Mar 30 2020 01:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00079 * 2 1 4 4 H 1.48496 * 109.47191 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47048 * 60.00244 * 3 2 1 6 6 H 1.48498 * 109.46830 * 300.00646 * 3 2 1 7 7 C 1.37877 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99956 * 173.92483 * 7 2 1 9 9 C 1.50704 * 120.00050 * 353.92946 * 7 2 1 10 10 H 1.08992 * 109.47197 * 32.05065 * 9 7 2 11 11 O 1.42903 * 109.47125 * 152.05301 * 9 7 2 12 12 C 1.42895 * 113.99816 * 269.99564 * 11 9 7 13 13 C 1.52996 * 109.47185 * 180.02562 * 12 11 9 14 14 H 1.09006 * 109.50483 * 305.00038 * 13 12 11 15 15 C 1.53121 * 109.50574 * 184.92387 * 13 12 11 16 16 C 1.53117 * 109.16129 * 182.40343 * 15 13 12 17 17 C 1.53045 * 109.27847 * 57.65258 * 16 15 13 18 18 N 1.46842 * 109.52143 * 300.81980 * 17 16 15 19 19 C 1.46848 * 111.23270 * 61.72440 * 18 17 16 20 20 C 1.50698 * 109.46817 * 272.04928 * 9 7 2 21 21 C 1.38229 * 120.00229 * 278.49952 * 20 9 7 22 22 C 1.38237 * 120.00074 * 179.74388 * 21 20 9 23 23 C 1.38230 * 119.99893 * 0.52918 * 22 21 20 24 24 C 1.38237 * 120.00255 * 359.74603 * 23 22 21 25 25 C 1.38236 * 119.99852 * 359.97438 * 24 23 22 26 26 H 0.97007 * 120.00090 * 184.99843 * 1 2 3 27 27 H 1.08996 * 109.47291 * 300.00149 * 12 11 9 28 28 H 1.09006 * 109.47010 * 60.00458 * 12 11 9 29 29 H 1.09000 * 109.52061 * 302.30851 * 15 13 12 30 30 H 1.09002 * 109.52212 * 62.43584 * 15 13 12 31 31 H 1.09004 * 109.50700 * 177.59136 * 16 15 13 32 32 H 1.08993 * 109.50599 * 297.67380 * 16 15 13 33 33 H 1.09000 * 109.46015 * 60.83613 * 17 16 15 34 34 H 1.08999 * 109.46158 * 180.80294 * 17 16 15 35 35 H 1.00903 * 111.00151 * 297.64405 * 18 17 16 36 36 H 1.09001 * 109.49470 * 178.28078 * 19 18 17 37 37 H 1.08996 * 109.43178 * 58.30876 * 19 18 17 38 38 H 1.07997 * 120.00294 * 0.02562 * 21 20 9 39 39 H 1.08008 * 119.99999 * 180.29531 * 22 21 20 40 40 H 1.08002 * 120.00133 * 179.76989 * 23 22 21 41 41 H 1.07995 * 120.00308 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.00051 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8905 2.3964 1.2125 6 1 1.8903 2.3964 -1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0800 -1.1967 -0.0995 9 6 1.2573 -2.4956 0.1369 10 1 0.2751 -2.4013 -0.3260 11 8 1.9912 -3.5368 -0.5107 12 6 1.6556 -3.7141 -1.8884 13 6 2.4970 -4.8486 -2.4764 14 1 3.5542 -4.6415 -2.3101 15 6 2.2280 -4.9583 -3.9798 16 6 3.0276 -6.1335 -4.5489 17 6 2.6363 -7.4157 -3.8106 18 7 2.9135 -7.2604 -2.3769 19 6 2.1218 -6.1678 -1.7975 20 6 1.0945 -2.8294 1.5974 21 6 2.1317 -3.4253 2.2900 22 6 1.9842 -3.7267 3.6310 23 6 0.7955 -3.4422 4.2767 24 6 -0.2438 -2.8514 3.5827 25 6 -0.0943 -2.5448 2.2431 26 1 -0.4850 -0.8369 0.0732 27 1 0.5982 -3.9636 -1.9756 28 1 1.8574 -2.7917 -2.4331 29 1 1.1642 -5.1260 -4.1482 30 1 2.5339 -4.0356 -4.4729 31 1 2.8073 -6.2434 -5.6108 32 1 4.0932 -5.9471 -4.4158 33 1 1.5735 -7.6086 -3.9563 34 1 3.2143 -8.2520 -4.2038 35 1 3.8989 -7.1190 -2.2124 36 1 2.3261 -6.0974 -0.7291 37 1 1.0613 -6.3669 -1.9520 38 1 3.0590 -3.6513 1.7847 39 1 2.7964 -4.1880 4.1734 40 1 0.6789 -3.6810 5.3235 41 1 -1.1724 -2.6287 4.0872 42 1 -0.9061 -2.0829 1.7009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217879693.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:38 Heat of formation + Delta-G solvation = -42.933500 kcal Electronic energy + Delta-G solvation = -21507.588729 eV Core-core repulsion = 18451.253224 eV Total energy + Delta-G solvation = -3056.335505 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.02644 -38.47854 -36.50826 -33.41906 -32.07295 -31.21968 -30.29996 -30.07894 -26.38615 -25.12612 -23.51197 -23.09405 -21.82602 -21.29260 -20.45314 -19.99526 -17.22235 -16.23445 -15.83737 -15.54189 -15.27192 -14.69643 -14.60547 -13.93386 -13.84204 -13.70287 -13.66829 -13.02866 -12.75801 -12.58824 -12.39457 -12.12242 -11.85387 -11.78453 -11.49826 -11.21704 -11.03538 -10.88759 -10.65607 -10.41889 -10.38910 -10.22697 -10.16830 -9.74337 -9.61567 -8.63001 -8.35220 -8.23365 -8.14100 -7.66173 -6.52164 -4.27126 2.18577 2.21746 3.36314 3.39924 3.54081 4.31683 4.38398 4.47475 4.68747 4.85506 4.93333 5.12857 5.16088 5.21361 5.49494 5.51348 5.58980 5.61354 5.65971 5.74697 5.78388 5.90071 5.91887 5.98710 6.06581 6.13939 6.17070 6.33201 6.34955 6.42423 6.43685 6.53881 6.70298 6.87052 6.87114 7.07643 7.21698 7.32773 7.41529 7.54526 7.79235 7.90836 8.06768 8.54401 8.66453 9.45130 10.82110 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.005846 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.306633 B = 4788.527699 C = 6251.523886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.027 3.973 3 Si 1.073 2.927 4 H -0.287 1.287 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.603 4.603 8 H 0.060 0.940 9 C 0.230 3.770 10 H 0.030 0.970 11 O -0.391 6.391 12 C 0.085 3.915 13 C -0.119 4.119 14 H 0.074 0.926 15 C -0.114 4.114 16 C -0.155 4.155 17 C 0.056 3.944 18 N -0.688 5.688 19 C 0.066 3.934 20 C -0.034 4.034 21 C -0.103 4.103 22 C -0.130 4.130 23 C -0.149 4.149 24 C -0.125 4.125 25 C -0.120 4.120 26 H 0.270 0.730 27 H 0.031 0.969 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.339 0.661 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.157 -10.365 -3.354 11.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.179 4.179 3 Si 0.901 3.099 4 H -0.213 1.213 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.640 4.640 8 H 0.079 0.921 9 C 0.174 3.826 10 H 0.048 0.952 11 O -0.311 6.311 12 C 0.007 3.993 13 C -0.140 4.140 14 H 0.092 0.908 15 C -0.152 4.152 16 C -0.194 4.194 17 C -0.074 4.074 18 N -0.316 5.316 19 C -0.063 4.063 20 C -0.035 4.035 21 C -0.121 4.121 22 C -0.148 4.148 23 C -0.167 4.167 24 C -0.143 4.143 25 C -0.138 4.138 26 H 0.082 0.918 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.156 0.844 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.135 0.865 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.638 -9.348 -3.132 10.206 hybrid contribution 0.449 -0.403 -0.358 0.702 sum 3.087 -9.751 -3.490 10.807 Atomic orbital electron populations 1.70803 1.06838 1.30938 1.45169 1.25884 0.96392 1.02747 0.92839 0.83488 0.74688 0.74606 0.77149 1.21297 1.21076 1.21173 1.22335 0.95803 0.91125 1.54746 0.92149 1.18819 0.92486 0.85877 0.85435 0.95248 1.87667 1.65537 1.56493 1.21385 1.22097 0.96152 0.96451 0.84644 1.21831 1.01079 0.96535 0.94520 0.90769 1.21541 1.00284 0.98285 0.95059 1.22244 1.00249 0.96677 1.00268 1.22022 1.01631 0.96058 0.87726 1.60713 1.11794 1.45641 1.13427 1.22035 0.97827 0.86959 0.99475 1.20425 0.92229 0.92832 0.98035 1.20866 0.98997 0.98787 0.93442 1.21013 0.97226 1.01580 0.95026 1.20855 0.94349 1.02537 0.99002 1.20944 0.98514 1.00235 0.94606 1.20966 0.97576 1.00525 0.94736 0.91845 0.95038 0.93433 0.91884 0.91742 0.91658 0.92060 0.91131 0.91141 0.84419 0.89691 0.91407 0.86505 0.87286 0.87404 0.87196 0.86674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.82 13.63 55.43 0.76 -25.07 16 2 C 0.03 0.74 5.45 -17.82 -0.10 0.64 16 3 Si 1.07 24.86 29.91 -169.99 -5.08 19.78 16 4 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.60 -16.48 8.62 -34.44 -0.30 -16.78 16 8 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 9 C 0.23 5.72 2.17 -29.03 -0.06 5.65 16 10 H 0.03 0.78 5.98 -51.93 -0.31 0.47 16 11 O -0.39 -8.79 8.80 -35.23 -0.31 -9.10 16 12 C 0.08 1.62 5.12 37.16 0.19 1.81 16 13 C -0.12 -1.82 2.57 -90.54 -0.23 -2.05 16 14 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 15 C -0.11 -1.46 5.29 -26.61 -0.14 -1.60 16 16 C -0.16 -1.64 6.08 -26.65 -0.16 -1.80 16 17 C 0.06 0.59 6.56 -3.83 -0.03 0.57 16 18 N -0.69 -8.60 6.87 -113.82 -0.78 -9.38 16 19 C 0.07 0.96 5.73 -3.83 -0.02 0.94 16 20 C -0.03 -0.81 4.96 -104.62 -0.52 -1.33 16 21 C -0.10 -2.20 9.36 -39.59 -0.37 -2.57 16 22 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 23 C -0.15 -2.65 10.05 -39.58 -0.40 -3.05 16 24 C -0.12 -2.38 10.05 -39.58 -0.40 -2.78 16 25 C -0.12 -2.64 9.52 -39.58 -0.38 -3.02 16 26 H 0.27 7.59 5.31 -40.82 -0.22 7.37 16 27 H 0.03 0.59 8.08 -51.93 -0.42 0.17 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.34 3.92 8.86 -39.29 -0.35 3.57 16 36 H 0.08 1.38 7.85 -51.93 -0.41 0.97 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.12 2.48 7.73 -52.49 -0.41 2.08 16 39 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 40 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.12 2.59 6.95 -52.49 -0.36 2.22 16 LS Contribution 338.13 15.07 5.10 5.10 Total: -1.00 -29.01 338.13 -10.39 -39.39 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -6.75 Total: 7.44 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: -3.31 Total: -28.16 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: -0.03 Total: -34.45 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.31 Total: -9.10 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.08 Total: 19.78 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.01 -10.39 -39.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217879693.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.539 kcal (2) G-P(sol) polarization free energy of solvation -29.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds