Wall clock time and date at job start Mon Mar 30 2020 01:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00079 * 2 1 4 4 H 1.48496 * 109.47191 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47048 * 60.00244 * 3 2 1 6 6 H 1.48498 * 109.46830 * 300.00646 * 3 2 1 7 7 C 1.37877 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99956 * 173.92483 * 7 2 1 9 9 C 1.50704 * 120.00050 * 353.92946 * 7 2 1 10 10 H 1.08992 * 109.47197 * 32.05065 * 9 7 2 11 11 O 1.42903 * 109.47125 * 152.05301 * 9 7 2 12 12 C 1.42895 * 113.99816 * 269.99564 * 11 9 7 13 13 C 1.52996 * 109.47185 * 180.02562 * 12 11 9 14 14 H 1.09006 * 109.50483 * 305.00038 * 13 12 11 15 15 C 1.53121 * 109.50574 * 184.92387 * 13 12 11 16 16 C 1.53117 * 109.16129 * 182.40343 * 15 13 12 17 17 C 1.53045 * 109.27847 * 57.65258 * 16 15 13 18 18 N 1.46842 * 109.52143 * 300.81980 * 17 16 15 19 19 C 1.46848 * 111.23270 * 61.72440 * 18 17 16 20 20 C 1.50698 * 109.46817 * 272.04928 * 9 7 2 21 21 C 1.38229 * 120.00229 * 278.49952 * 20 9 7 22 22 C 1.38237 * 120.00074 * 179.74388 * 21 20 9 23 23 C 1.38230 * 119.99893 * 0.52918 * 22 21 20 24 24 C 1.38237 * 120.00255 * 359.74603 * 23 22 21 25 25 C 1.38236 * 119.99852 * 359.97438 * 24 23 22 26 26 H 0.97007 * 120.00090 * 184.99843 * 1 2 3 27 27 H 1.08996 * 109.47291 * 300.00149 * 12 11 9 28 28 H 1.09006 * 109.47010 * 60.00458 * 12 11 9 29 29 H 1.09000 * 109.52061 * 302.30851 * 15 13 12 30 30 H 1.09002 * 109.52212 * 62.43584 * 15 13 12 31 31 H 1.09004 * 109.50700 * 177.59136 * 16 15 13 32 32 H 1.08993 * 109.50599 * 297.67380 * 16 15 13 33 33 H 1.09000 * 109.46015 * 60.83613 * 17 16 15 34 34 H 1.08999 * 109.46158 * 180.80294 * 17 16 15 35 35 H 1.00903 * 111.00151 * 297.64405 * 18 17 16 36 36 H 1.09001 * 109.49470 * 178.28078 * 19 18 17 37 37 H 1.08996 * 109.43178 * 58.30876 * 19 18 17 38 38 H 1.07997 * 120.00294 * 0.02562 * 21 20 9 39 39 H 1.08008 * 119.99999 * 180.29531 * 22 21 20 40 40 H 1.08002 * 120.00133 * 179.76989 * 23 22 21 41 41 H 1.07995 * 120.00308 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.00051 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8905 2.3964 1.2125 6 1 1.8903 2.3964 -1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0800 -1.1967 -0.0995 9 6 1.2573 -2.4956 0.1369 10 1 0.2751 -2.4013 -0.3260 11 8 1.9912 -3.5368 -0.5107 12 6 1.6556 -3.7141 -1.8884 13 6 2.4970 -4.8486 -2.4764 14 1 3.5542 -4.6415 -2.3101 15 6 2.2280 -4.9583 -3.9798 16 6 3.0276 -6.1335 -4.5489 17 6 2.6363 -7.4157 -3.8106 18 7 2.9135 -7.2604 -2.3769 19 6 2.1218 -6.1678 -1.7975 20 6 1.0945 -2.8294 1.5974 21 6 2.1317 -3.4253 2.2900 22 6 1.9842 -3.7267 3.6310 23 6 0.7955 -3.4422 4.2767 24 6 -0.2438 -2.8514 3.5827 25 6 -0.0943 -2.5448 2.2431 26 1 -0.4850 -0.8369 0.0732 27 1 0.5982 -3.9636 -1.9756 28 1 1.8574 -2.7917 -2.4331 29 1 1.1642 -5.1260 -4.1482 30 1 2.5339 -4.0356 -4.4729 31 1 2.8073 -6.2434 -5.6108 32 1 4.0932 -5.9471 -4.4158 33 1 1.5735 -7.6086 -3.9563 34 1 3.2143 -8.2520 -4.2038 35 1 3.8989 -7.1190 -2.2124 36 1 2.3261 -6.0974 -0.7291 37 1 1.0613 -6.3669 -1.9520 38 1 3.0590 -3.6513 1.7847 39 1 2.7964 -4.1880 4.1734 40 1 0.6789 -3.6810 5.3235 41 1 -1.1724 -2.6287 4.0872 42 1 -0.9061 -2.0829 1.7009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217879693.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:38 Heat of formation + Delta-G solvation = -59.775561 kcal Electronic energy + Delta-G solvation = -21508.319055 eV Core-core repulsion = 18451.253224 eV Total energy + Delta-G solvation = -3057.065831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.43901 -39.89153 -38.15608 -35.32344 -33.43466 -32.42481 -31.81366 -31.64366 -28.23183 -26.64444 -24.99556 -24.57568 -23.33650 -22.50150 -22.12940 -21.21098 -19.22698 -17.79621 -17.31356 -16.91673 -16.69019 -16.21643 -15.75655 -15.66273 -15.38330 -15.28571 -15.14516 -14.42187 -14.21883 -14.06493 -13.91230 -13.56455 -13.32621 -13.14931 -13.00493 -12.72672 -12.28243 -12.26912 -12.10053 -12.02748 -11.94668 -11.65744 -11.55650 -11.45755 -11.38926 -10.65726 -10.21206 -9.72201 -9.41483 -9.30411 -8.69628 -6.46602 0.59395 0.63018 1.46441 1.54839 1.72058 2.45867 2.83771 3.04453 3.15427 3.35979 3.71310 3.84980 3.94993 4.08137 4.11492 4.21183 4.27605 4.30680 4.38086 4.42880 4.47090 4.58670 4.61370 4.65990 4.74696 4.82725 4.93068 4.95872 4.98454 5.05415 5.09535 5.18536 5.22459 5.27972 5.34162 5.66208 5.69857 5.79017 5.92560 5.94585 6.02994 6.24483 6.44683 6.46478 6.61481 7.33929 8.63755 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.005846 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.306633 B = 4788.527699 C = 6251.523886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.016 4.016 3 Si 1.114 2.886 4 H -0.276 1.276 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.614 4.614 8 H 0.043 0.957 9 C 0.235 3.765 10 H 0.002 0.998 11 O -0.396 6.396 12 C 0.082 3.918 13 C -0.108 4.108 14 H 0.067 0.933 15 C -0.113 4.113 16 C -0.146 4.146 17 C 0.055 3.945 18 N -0.689 5.689 19 C 0.077 3.923 20 C -0.066 4.066 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.136 4.136 24 C -0.124 4.124 25 C -0.143 4.143 26 H 0.261 0.739 27 H 0.029 0.971 28 H 0.024 0.976 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.345 0.655 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.147 0.853 40 H 0.154 0.846 41 H 0.140 0.860 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.101 -11.584 -2.323 12.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.217 4.217 3 Si 0.936 3.064 4 H -0.201 1.201 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.652 4.652 8 H 0.062 0.938 9 C 0.179 3.821 10 H 0.019 0.981 11 O -0.316 6.316 12 C 0.004 3.996 13 C -0.128 4.128 14 H 0.085 0.915 15 C -0.150 4.150 16 C -0.186 4.186 17 C -0.075 4.075 18 N -0.317 5.317 19 C -0.053 4.053 20 C -0.067 4.067 21 C -0.138 4.138 22 C -0.140 4.140 23 C -0.154 4.154 24 C -0.141 4.141 25 C -0.161 4.161 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.163 0.837 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.126 0.874 39 H 0.165 0.835 40 H 0.172 0.828 41 H 0.158 0.842 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.587 -10.597 -2.114 11.386 hybrid contribution 0.137 -0.130 -0.646 0.673 sum 3.724 -10.728 -2.759 11.686 Atomic orbital electron populations 1.70884 1.07503 1.30520 1.47045 1.27155 0.96537 1.05893 0.92066 0.82977 0.74209 0.71469 0.77787 1.20117 1.20261 1.20002 1.22498 0.95000 0.92754 1.54927 0.93835 1.18622 0.90774 0.85770 0.86959 0.98065 1.87652 1.65372 1.55685 1.22898 1.22277 0.97064 0.97122 0.83102 1.21775 0.99577 0.95212 0.96264 0.91483 1.21553 1.00969 0.99567 0.92944 1.22196 0.99910 0.95155 1.01294 1.22130 1.02131 0.96859 0.86352 1.60705 1.11997 1.44064 1.14917 1.21805 0.97974 0.87202 0.98314 1.20364 0.93903 0.95374 0.97060 1.20920 0.98154 0.99606 0.95103 1.21422 0.98744 1.00206 0.93662 1.21374 0.92992 1.00096 1.00918 1.21314 1.00364 0.99248 0.93215 1.20989 0.96862 1.01810 0.96454 0.92797 0.95288 0.95786 0.91762 0.92075 0.89500 0.91646 0.91195 0.88761 0.83700 0.91846 0.91809 0.87384 0.83527 0.82814 0.84193 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.02 13.63 21.45 0.29 -54.72 16 2 C -0.02 -0.94 5.45 84.65 0.46 -0.47 16 3 Si 1.11 50.80 29.91 68.60 2.05 52.85 16 4 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.61 -35.27 8.62 25.60 0.22 -35.05 16 8 H 0.04 2.57 7.82 -2.91 -0.02 2.55 16 9 C 0.24 12.46 2.17 29.10 0.06 12.52 16 10 H 0.00 0.09 5.98 -2.39 -0.01 0.08 16 11 O -0.40 -18.98 8.80 -148.98 -1.31 -20.29 16 12 C 0.08 3.37 5.12 71.98 0.37 3.74 16 13 C -0.11 -3.38 2.57 -10.74 -0.03 -3.41 16 14 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 15 C -0.11 -2.85 5.29 30.67 0.16 -2.68 16 16 C -0.15 -2.78 6.08 30.65 0.19 -2.60 16 17 C 0.05 1.04 6.56 86.33 0.57 1.61 16 18 N -0.69 -16.38 6.87 -514.01 -3.53 -19.91 16 19 C 0.08 2.27 5.73 86.33 0.49 2.76 16 20 C -0.07 -3.22 4.96 -19.87 -0.10 -3.32 16 21 C -0.12 -5.14 9.36 22.27 0.21 -4.94 16 22 C -0.12 -4.21 10.05 22.27 0.22 -3.98 16 23 C -0.14 -4.32 10.05 22.27 0.22 -4.10 16 24 C -0.12 -4.48 10.05 22.27 0.22 -4.26 16 25 C -0.14 -6.46 9.52 22.27 0.21 -6.25 16 26 H 0.26 15.62 5.31 -92.70 -0.49 15.13 16 27 H 0.03 1.18 8.08 -2.39 -0.02 1.16 16 28 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.35 7.53 8.86 -89.69 -0.79 6.73 16 36 H 0.06 2.13 7.85 -2.39 -0.02 2.11 16 37 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.11 4.71 7.73 -2.91 -0.02 4.69 16 39 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 40 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 41 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 42 H 0.10 4.59 6.95 -2.91 -0.02 4.57 16 Total: -1.00 -65.86 338.13 1.46 -64.40 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.47 Total: 28.10 kcal Atomic # 6 Polarization: -53.92 SS G_CDS: 3.49 Total: -50.43 kcal Atomic # 7 Polarization: -71.40 SS G_CDS: -3.24 Total: -74.63 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -1.31 Total: -20.29 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 2.05 Total: 52.85 kcal Total: -65.86 1.46 -64.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217879693.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.625 kcal (2) G-P(sol) polarization free energy of solvation -65.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds