Wall clock time and date at job start Mon Mar 30 2020 02:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38230 * 119.99835 * 2 1 4 4 C 1.38239 * 120.00141 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00052 * 179.97438 * 4 3 2 6 6 C 1.38240 * 119.99638 * 359.95433 * 4 3 2 7 7 C 1.38234 * 120.00027 * 0.02562 * 6 4 3 8 8 C 1.50694 * 119.99722 * 179.97438 * 7 6 4 9 9 O 1.42907 * 109.46745 * 90.00534 * 8 7 6 10 10 C 1.42901 * 113.99641 * 179.97438 * 9 8 7 11 11 H 1.09003 * 110.64229 * 26.86276 * 10 9 8 12 12 C 1.55158 * 110.71566 * 149.99955 * 10 9 8 13 13 C 1.54917 * 101.57978 * 154.04390 * 12 10 9 14 14 N 1.47422 * 104.83074 * 322.98980 * 13 12 10 15 15 C 1.36938 * 125.64571 * 204.09198 * 14 13 12 16 16 H 1.07998 * 120.00058 * 180.02562 * 15 14 13 17 17 C 1.38814 * 119.99997 * 0.02987 * 15 14 13 18 18 N 1.31620 * 120.00091 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99701 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47071 * 89.99686 * 19 17 15 21 21 H 1.48497 * 109.47157 * 209.99349 * 19 17 15 22 22 H 1.48494 * 109.47207 * 329.99972 * 19 17 15 23 23 C 1.47020 * 108.70191 * 24.12901 * 14 13 12 24 24 C 1.38231 * 120.00042 * 180.23715 * 2 1 3 25 25 H 1.08998 * 109.47105 * 90.00099 * 1 2 3 26 26 H 1.08996 * 109.46965 * 209.99869 * 1 2 3 27 27 H 1.08996 * 109.47129 * 329.99563 * 1 2 3 28 28 H 1.08005 * 120.00174 * 0.02562 * 3 2 1 29 29 H 1.08996 * 109.47220 * 269.97372 * 5 4 3 30 30 H 1.08996 * 109.47661 * 29.97712 * 5 4 3 31 31 H 1.09004 * 109.46825 * 149.97966 * 5 4 3 32 32 H 1.08000 * 119.99630 * 180.02562 * 6 4 3 33 33 H 1.09001 * 109.47858 * 330.00663 * 8 7 6 34 34 H 1.09005 * 109.47196 * 209.99924 * 8 7 6 35 35 H 1.08998 * 111.00511 * 35.96922 * 12 10 9 36 36 H 1.08996 * 111.04098 * 272.13255 * 12 10 9 37 37 H 1.08998 * 110.36726 * 81.82993 * 13 12 10 38 38 H 1.09005 * 110.36534 * 204.15515 * 13 12 10 39 39 H 0.96998 * 119.99446 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.88493 * 239.51822 * 23 14 13 41 41 H 1.09003 * 109.87996 * 118.35911 * 23 14 13 42 42 H 1.08004 * 120.00113 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3339 2.5023 -0.0011 6 6 4.2717 0.0000 -0.0001 7 6 3.5805 -1.1971 0.0003 8 6 4.3340 -2.5022 0.0002 9 8 4.5726 -2.9145 1.3475 10 6 5.2845 -4.1484 1.4602 11 1 5.9106 -4.3123 0.5832 12 6 6.1374 -4.1736 2.7561 13 6 6.2401 -5.6947 3.0312 14 7 4.9265 -6.2383 2.6412 15 6 4.3719 -7.3991 3.1105 16 1 3.3995 -7.7129 2.7608 17 6 5.0596 -8.1724 4.0357 18 7 6.2449 -7.7902 4.4615 19 14 4.3027 -9.7555 4.6763 20 1 4.7064 -10.8862 3.8023 21 1 4.7774 -10.0062 6.0609 22 1 2.8229 -9.6326 4.6748 23 6 4.3109 -5.3282 1.6643 24 6 2.1982 -1.1971 -0.0050 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6581 2.1325 0.0004 29 1 4.5156 2.8165 -1.0289 30 1 3.7449 3.2622 0.5124 31 1 5.2864 2.3722 0.5127 32 1 5.3517 0.0001 -0.0001 33 1 5.2863 -2.3719 -0.5139 34 1 3.7448 -3.2619 -0.5133 35 1 5.6248 -3.6629 3.5712 36 1 7.1226 -3.7402 2.5846 37 1 7.0295 -6.1376 2.4239 38 1 6.4270 -5.8770 4.0896 39 1 6.7256 -8.3308 5.1077 40 1 3.3590 -4.9613 2.0480 41 1 4.1560 -5.8488 0.7192 42 1 1.6582 -2.1325 -0.0092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222774296.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:20 Heat of formation + Delta-G solvation = -23.546430 kcal Electronic energy + Delta-G solvation = -20661.831938 eV Core-core repulsion = 17606.337120 eV Total energy + Delta-G solvation = -3055.494818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.67310 -39.72904 -37.56186 -34.43012 -34.39049 -33.41046 -31.09495 -29.01384 -28.34534 -27.57069 -27.12920 -26.13104 -22.20821 -21.84984 -21.61593 -21.57792 -18.99594 -17.98405 -17.24438 -16.89883 -16.76110 -16.30295 -15.86145 -15.38696 -15.06025 -14.81648 -14.51667 -14.28774 -13.98912 -13.84354 -13.64221 -13.55268 -13.32606 -13.16063 -13.00240 -12.82650 -12.68562 -12.47694 -12.30146 -12.19955 -12.02606 -11.88578 -11.82163 -11.66601 -11.35118 -10.77627 -10.51878 -9.63273 -9.45465 -8.93509 -7.80039 -5.25604 0.32495 0.44386 1.45903 1.48421 1.57346 2.43867 2.53884 3.05319 3.30659 3.69796 3.75728 3.80850 3.89309 3.93941 4.09072 4.16621 4.22896 4.32569 4.38126 4.51624 4.54780 4.62401 4.67697 4.70461 4.77152 4.81877 4.86819 4.97583 4.99018 5.00153 5.02720 5.07309 5.24733 5.36494 5.42609 5.58243 5.61527 5.62705 5.70638 5.75480 6.11406 6.24684 6.31813 7.07402 7.73420 8.37347 9.22171 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029447 B = 0.003319 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.637242 B = 8433.847754 C = 9092.069171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.095 4.095 3 C -0.124 4.124 4 C -0.094 4.094 5 C -0.111 4.111 6 C -0.120 4.120 7 C -0.094 4.094 8 C 0.097 3.903 9 O -0.383 6.383 10 C 0.092 3.908 11 H 0.087 0.913 12 C -0.126 4.126 13 C 0.155 3.845 14 N -0.625 5.625 15 C -0.245 4.245 16 H 0.079 0.921 17 C -0.066 4.066 18 N -0.948 5.948 19 Si 0.985 3.015 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.271 1.271 23 C 0.115 3.885 24 C -0.126 4.126 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.144 0.856 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.130 0.870 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.093 0.907 37 H -0.002 1.002 38 H 0.077 0.923 39 H 0.249 0.751 40 H 0.022 0.978 41 H 0.028 0.972 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.025 20.215 -11.727 24.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 C -0.142 4.142 4 C -0.094 4.094 5 C -0.167 4.167 6 C -0.138 4.138 7 C -0.094 4.094 8 C 0.021 3.979 9 O -0.303 6.303 10 C 0.034 3.966 11 H 0.104 0.896 12 C -0.164 4.164 13 C 0.030 3.970 14 N -0.353 5.353 15 C -0.374 4.374 16 H 0.097 0.903 17 C -0.258 4.258 18 N -0.598 5.598 19 Si 0.812 3.188 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.195 1.195 23 C -0.011 4.011 24 C -0.144 4.144 25 H 0.100 0.900 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.162 0.838 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.148 0.852 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.016 0.984 38 H 0.095 0.905 39 H 0.059 0.941 40 H 0.040 0.960 41 H 0.046 0.954 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.061 20.175 -11.445 23.974 hybrid contribution -0.105 -1.460 0.252 1.485 sum -6.167 18.716 -11.193 22.662 Atomic orbital electron populations 1.20824 0.89413 1.03436 1.03183 1.20219 0.97502 0.92755 0.98995 1.21245 0.93682 0.98185 1.01054 1.20254 0.94317 0.95985 0.98809 1.20821 0.99919 0.92745 1.03237 1.21124 1.00359 0.91516 1.00804 1.19706 0.94000 0.94245 1.01476 1.21512 0.99188 0.93294 0.83926 1.87995 1.76920 1.38529 1.26809 1.22986 0.91965 0.82874 0.98797 0.89555 1.22979 0.99652 0.97409 0.96391 1.21746 0.85781 0.88394 1.01072 1.44703 1.18401 1.23585 1.48586 1.19466 1.01197 0.97408 1.19281 0.90291 1.25684 0.97372 1.02685 1.00096 1.70030 1.14456 1.39683 1.35620 0.84991 0.77902 0.78822 0.77061 1.21072 1.21672 1.19546 1.21822 0.95897 0.91173 0.92204 1.21119 0.93624 0.98504 1.01184 0.89985 0.91715 0.90176 0.83824 0.89966 0.90354 0.91219 0.85233 0.90907 0.92271 0.92146 0.88892 0.98384 0.90463 0.94103 0.95969 0.95430 0.86241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 10.01 71.24 0.71 -1.02 16 2 C -0.09 -2.01 5.88 -19.87 -0.12 -2.13 16 3 C -0.12 -2.37 9.36 22.27 0.21 -2.16 16 4 C -0.09 -1.87 5.88 -19.86 -0.12 -1.98 16 5 C -0.11 -1.48 10.01 71.24 0.71 -0.77 16 6 C -0.12 -2.80 9.36 22.27 0.21 -2.59 16 7 C -0.09 -2.49 5.51 -19.87 -0.11 -2.59 16 8 C 0.10 2.65 5.90 71.23 0.42 3.07 16 9 O -0.38 -13.43 10.06 -148.98 -1.50 -14.93 16 10 C 0.09 3.43 3.44 31.78 0.11 3.54 16 11 H 0.09 2.84 7.82 -2.39 -0.02 2.82 16 12 C -0.13 -5.08 6.81 31.99 0.22 -4.86 16 13 C 0.15 7.95 5.89 86.86 0.51 8.46 16 14 N -0.63 -34.15 3.39 -691.99 -2.35 -36.49 16 15 C -0.24 -14.31 10.27 84.03 0.86 -13.45 16 16 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 17 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 18 N -0.95 -57.48 10.09 21.65 0.22 -57.26 16 19 Si 0.98 46.49 29.55 68.60 2.03 48.51 16 20 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 21 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 23 C 0.11 5.16 7.02 86.73 0.61 5.77 16 24 C -0.13 -3.20 9.36 22.27 0.21 -2.99 16 25 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.04 8.09 -2.39 -0.02 1.02 16 27 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 28 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 0.85 8.09 -2.39 -0.02 0.83 16 31 H 0.07 0.90 8.09 -2.38 -0.02 0.89 16 32 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 33 H 0.07 1.70 8.06 -2.39 -0.02 1.69 16 34 H 0.06 1.56 8.08 -2.38 -0.02 1.54 16 35 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 38 H 0.08 4.48 5.88 -2.38 -0.01 4.47 16 39 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 40 H 0.02 1.04 8.06 -2.39 -0.02 1.02 16 41 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.12 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -68.70 344.01 4.28 -64.43 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.97 Total: 12.81 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 4.90 Total: -17.06 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -2.13 Total: -93.76 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -1.50 Total: -14.93 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -68.70 4.28 -64.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222774296.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.883 kcal (2) G-P(sol) polarization free energy of solvation -68.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds