Wall clock time and date at job start Mon Mar 30 2020 02:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38237 * 119.99549 * 2 1 4 4 C 1.38232 * 119.99708 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99907 * 179.97438 * 4 3 2 6 6 C 1.38237 * 120.00028 * 0.02562 * 4 3 2 7 7 C 1.38235 * 120.00177 * 359.96388 * 6 4 3 8 8 C 1.50703 * 120.00115 * 180.02562 * 7 6 4 9 9 O 1.42898 * 109.47139 * 89.99363 * 8 7 6 10 10 C 1.42900 * 114.00063 * 180.02562 * 9 8 7 11 11 H 1.09002 * 110.91406 * 333.90292 * 10 9 8 12 12 C 1.55155 * 111.00497 * 210.00520 * 10 9 8 13 13 C 1.54331 * 102.93905 * 206.42141 * 12 10 9 14 14 N 1.47022 * 107.26971 * 22.18949 * 13 12 10 15 15 C 1.36939 * 125.64119 * 181.01876 * 14 13 12 16 16 H 1.08001 * 119.99516 * 153.86585 * 15 14 13 17 17 C 1.38806 * 120.00489 * 333.86045 * 15 14 13 18 18 N 1.31619 * 119.99753 * 145.67443 * 17 15 14 19 19 Si 1.86800 * 120.00032 * 325.67545 * 17 15 14 20 20 H 1.48497 * 109.47381 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46900 * 239.99437 * 19 17 15 22 22 H 1.48500 * 109.46916 * 120.00043 * 19 17 15 23 23 C 1.47418 * 108.70486 * 1.29074 * 14 13 12 24 24 C 1.38231 * 119.99825 * 0.26759 * 7 6 4 25 25 H 1.08992 * 109.47081 * 90.00536 * 1 2 3 26 26 H 1.09002 * 109.46698 * 209.99698 * 1 2 3 27 27 H 1.08999 * 109.47450 * 329.99897 * 1 2 3 28 28 H 1.07997 * 120.00021 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.47230 * 270.01792 * 5 4 3 30 30 H 1.08991 * 109.47049 * 30.02220 * 5 4 3 31 31 H 1.09006 * 109.47030 * 150.02081 * 5 4 3 32 32 H 1.08001 * 119.99871 * 179.97438 * 6 4 3 33 33 H 1.09000 * 109.46582 * 329.99495 * 8 7 6 34 34 H 1.08993 * 109.46969 * 209.99395 * 8 7 6 35 35 H 1.08998 * 110.72616 * 88.05893 * 12 10 9 36 36 H 1.09005 * 110.71697 * 324.78161 * 12 10 9 37 37 H 1.08994 * 109.88016 * 262.77159 * 13 12 10 38 38 H 1.09001 * 110.00984 * 141.68128 * 13 12 10 39 39 H 0.96994 * 120.00437 * 5.06273 * 18 17 15 40 40 H 1.09000 * 110.37082 * 94.47947 * 23 14 13 41 41 H 1.09007 * 110.36440 * 216.80550 * 23 14 13 42 42 H 1.08001 * 120.00274 * 179.72938 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.3339 2.5024 0.0000 6 6 4.2717 0.0001 0.0005 7 6 3.5806 -1.1971 0.0008 8 6 4.3342 -2.5022 0.0013 9 8 4.5722 -2.9142 1.3488 10 6 5.2850 -4.1475 1.4622 11 1 5.1276 -4.7702 0.5815 12 6 4.8854 -4.9038 2.7566 13 6 6.1378 -5.7525 3.0616 14 7 7.2751 -5.1105 2.3864 15 6 8.5669 -5.5647 2.3929 16 1 9.2314 -5.3144 1.5791 17 6 9.0225 -6.3467 3.4453 18 7 9.9008 -7.3015 3.2236 19 14 8.3889 -6.0439 5.1763 20 1 7.4168 -4.9215 5.1584 21 1 9.5264 -5.6989 6.0664 22 1 7.7204 -7.2705 5.6803 23 6 6.7956 -3.8933 1.7067 24 6 2.1983 -1.1971 -0.0046 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6581 2.1325 -0.0004 29 1 4.5157 2.8166 -1.0278 30 1 3.7448 3.2622 0.5134 31 1 5.2864 2.3724 0.5139 32 1 5.3517 0.0002 0.0005 33 1 5.2866 -2.3719 -0.5124 34 1 3.7452 -3.2620 -0.5123 35 1 4.0205 -5.5429 2.5786 36 1 4.6878 -4.2027 3.5675 37 1 6.0023 -6.7640 2.6789 38 1 6.3145 -5.7836 4.1368 39 1 10.2850 -7.4115 2.3398 40 1 6.9375 -3.0214 2.3451 41 1 7.3156 -3.7587 0.7581 42 1 1.6583 -2.1324 -0.0089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222774300.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:24 Heat of formation + Delta-G solvation = -6.767248 kcal Electronic energy + Delta-G solvation = -20703.066033 eV Core-core repulsion = 17648.298815 eV Total energy + Delta-G solvation = -3054.767218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.80693 -38.38720 -36.15409 -33.68037 -32.98209 -32.17288 -29.46198 -27.95903 -27.51992 -26.83846 -25.99446 -23.63848 -20.93986 -20.88845 -20.49357 -20.18691 -17.48201 -16.77108 -16.39806 -16.03577 -15.40680 -14.69177 -14.42430 -14.24226 -14.11405 -13.60945 -13.42374 -13.37298 -13.07841 -12.80883 -12.73706 -12.44565 -12.20015 -12.14658 -12.00585 -11.64204 -11.33877 -11.16966 -10.98653 -10.87324 -10.76362 -10.50322 -10.24103 -9.55840 -9.26924 -9.18618 -8.80523 -8.66117 -8.23398 -7.05225 -6.29863 -3.24594 1.17212 1.25560 3.43245 3.48662 3.56117 3.72076 4.08627 4.59710 4.60402 4.61795 4.74146 5.00345 5.11829 5.12627 5.14913 5.17735 5.26681 5.33187 5.35862 5.41423 5.44158 5.45233 5.49627 5.57190 5.64085 5.66172 5.70038 5.93318 5.99005 6.05628 6.19779 6.31511 6.40207 6.42857 6.52547 6.54024 6.66318 6.71792 6.88901 6.89811 7.52587 7.92577 8.39252 9.02778 9.62350 10.36196 11.07257 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029697 B = 0.003442 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.636796 B = 8132.013056 C = 8478.281847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.119 4.119 4 C -0.087 4.087 5 C -0.114 4.114 6 C -0.104 4.104 7 C -0.075 4.075 8 C 0.102 3.898 9 O -0.371 6.371 10 C 0.073 3.927 11 H 0.070 0.930 12 C -0.126 4.126 13 C 0.125 3.875 14 N -0.601 5.601 15 C -0.343 4.343 16 H 0.067 0.933 17 C -0.005 4.005 18 N -0.902 5.902 19 Si 1.048 2.952 20 H -0.278 1.278 21 H -0.297 1.297 22 H -0.291 1.291 23 C 0.112 3.888 24 C -0.106 4.106 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.119 0.881 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.124 0.876 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.033 0.967 39 H 0.266 0.734 40 H 0.030 0.970 41 H 0.040 0.960 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.038 16.115 -7.997 25.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 C -0.137 4.137 4 C -0.087 4.087 5 C -0.170 4.170 6 C -0.122 4.122 7 C -0.075 4.075 8 C 0.025 3.975 9 O -0.290 6.290 10 C 0.014 3.986 11 H 0.088 0.912 12 C -0.164 4.164 13 C 0.000 4.000 14 N -0.330 5.330 15 C -0.470 4.470 16 H 0.084 0.916 17 C -0.209 4.209 18 N -0.541 5.541 19 Si 0.879 3.121 20 H -0.205 1.205 21 H -0.225 1.225 22 H -0.218 1.218 23 C -0.014 4.014 24 C -0.124 4.124 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.137 0.863 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.142 0.858 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.047 0.953 41 H 0.059 0.941 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.927 15.626 -6.307 24.603 hybrid contribution 0.133 0.443 -1.704 1.766 sum -17.794 16.068 -8.011 25.278 Atomic orbital electron populations 1.20772 0.91185 1.02787 1.02178 1.19868 0.96006 0.93031 1.00017 1.20894 0.93505 0.97432 1.01904 1.19886 0.93808 0.95273 0.99776 1.20785 1.00077 0.93936 1.02234 1.20975 0.99983 0.91311 0.99898 1.19632 0.93569 0.94199 1.00115 1.21311 0.98166 0.92700 0.85306 1.87954 1.76315 1.40155 1.24561 1.23425 0.92797 0.84275 0.98084 0.91207 1.22658 0.98136 0.98484 0.97081 1.21612 0.86112 0.95397 0.96890 1.44596 1.04295 1.22587 1.61526 1.19781 0.87236 1.34532 1.05429 0.91560 1.26069 0.98108 0.94151 1.02545 1.70925 1.32674 1.24169 1.26306 0.84049 0.75334 0.76310 0.76436 1.20470 1.22477 1.21841 1.22057 0.91406 0.91322 0.96648 1.20920 0.93416 0.97656 1.00395 0.91294 0.91478 0.91636 0.86268 0.91244 0.91634 0.91339 0.85847 0.92429 0.92686 0.91219 0.90754 0.94491 0.94956 0.92399 0.95254 0.94139 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 36.01 0.36 -0.49 16 2 C -0.09 -0.93 5.88 -104.62 -0.62 -1.55 16 3 C -0.12 -1.21 9.36 -39.58 -0.37 -1.58 16 4 C -0.09 -0.95 5.88 -104.62 -0.62 -1.56 16 5 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 6 C -0.10 -1.27 9.36 -39.58 -0.37 -1.64 16 7 C -0.08 -0.97 5.51 -104.62 -0.58 -1.55 16 8 C 0.10 1.38 5.90 36.01 0.21 1.59 16 9 O -0.37 -6.25 10.13 -35.23 -0.36 -6.61 16 10 C 0.07 1.31 3.56 -24.47 -0.09 1.22 16 11 H 0.07 1.18 7.83 -51.93 -0.41 0.78 16 12 C -0.13 -2.30 6.68 -24.89 -0.17 -2.46 16 13 C 0.12 2.83 6.04 -3.06 -0.02 2.81 16 14 N -0.60 -15.44 3.05 -169.94 -0.52 -15.96 16 15 C -0.34 -10.05 10.24 -15.06 -0.15 -10.20 16 16 H 0.07 2.05 8.06 -52.49 -0.42 1.63 16 17 C 0.00 -0.15 5.29 -17.43 -0.09 -0.24 16 18 N -0.90 -28.25 13.70 55.49 0.76 -27.49 16 19 Si 1.05 26.84 26.21 -169.99 -4.46 22.38 16 20 H -0.28 -6.83 6.18 56.52 0.35 -6.48 16 21 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 C 0.11 2.43 6.97 -2.41 -0.02 2.41 16 24 C -0.11 -1.24 9.36 -39.58 -0.37 -1.61 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 27 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 28 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.07 0.55 8.09 -51.93 -0.42 0.14 16 32 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 34 H 0.05 0.66 8.06 -51.93 -0.42 0.24 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.03 0.77 3.84 -51.93 -0.20 0.57 16 39 H 0.27 8.20 8.73 -40.82 -0.36 7.85 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 341.68 15.07 5.15 5.15 Total: -1.00 -32.66 341.68 -8.92 -41.59 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -6.98 Total: -3.65 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -2.52 Total: -15.41 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.24 Total: -43.44 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.36 Total: -6.61 kcal Atomic # 14 Polarization: 26.84 SS G_CDS: -4.46 Total: 22.38 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.66 -8.92 -41.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222774300.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.818 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds