Wall clock time and date at job start Mon Mar 30 2020 02:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38237 * 119.99549 * 2 1 4 4 C 1.38232 * 119.99708 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99907 * 179.97438 * 4 3 2 6 6 C 1.38237 * 120.00028 * 0.02562 * 4 3 2 7 7 C 1.38235 * 120.00177 * 359.96388 * 6 4 3 8 8 C 1.50703 * 120.00115 * 180.02562 * 7 6 4 9 9 O 1.42898 * 109.47139 * 89.99363 * 8 7 6 10 10 C 1.42900 * 114.00063 * 180.02562 * 9 8 7 11 11 H 1.09002 * 110.91406 * 333.90292 * 10 9 8 12 12 C 1.55155 * 111.00497 * 210.00520 * 10 9 8 13 13 C 1.54331 * 102.93905 * 206.42141 * 12 10 9 14 14 N 1.47022 * 107.26971 * 22.18949 * 13 12 10 15 15 C 1.36939 * 125.64119 * 181.01876 * 14 13 12 16 16 H 1.08001 * 119.99516 * 153.86585 * 15 14 13 17 17 C 1.38806 * 120.00489 * 333.86045 * 15 14 13 18 18 N 1.31619 * 119.99753 * 145.67443 * 17 15 14 19 19 Si 1.86800 * 120.00032 * 325.67545 * 17 15 14 20 20 H 1.48497 * 109.47381 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46900 * 239.99437 * 19 17 15 22 22 H 1.48500 * 109.46916 * 120.00043 * 19 17 15 23 23 C 1.47418 * 108.70486 * 1.29074 * 14 13 12 24 24 C 1.38231 * 119.99825 * 0.26759 * 7 6 4 25 25 H 1.08992 * 109.47081 * 90.00536 * 1 2 3 26 26 H 1.09002 * 109.46698 * 209.99698 * 1 2 3 27 27 H 1.08999 * 109.47450 * 329.99897 * 1 2 3 28 28 H 1.07997 * 120.00021 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.47230 * 270.01792 * 5 4 3 30 30 H 1.08991 * 109.47049 * 30.02220 * 5 4 3 31 31 H 1.09006 * 109.47030 * 150.02081 * 5 4 3 32 32 H 1.08001 * 119.99871 * 179.97438 * 6 4 3 33 33 H 1.09000 * 109.46582 * 329.99495 * 8 7 6 34 34 H 1.08993 * 109.46969 * 209.99395 * 8 7 6 35 35 H 1.08998 * 110.72616 * 88.05893 * 12 10 9 36 36 H 1.09005 * 110.71697 * 324.78161 * 12 10 9 37 37 H 1.08994 * 109.88016 * 262.77159 * 13 12 10 38 38 H 1.09001 * 110.00984 * 141.68128 * 13 12 10 39 39 H 0.96994 * 120.00437 * 5.06273 * 18 17 15 40 40 H 1.09000 * 110.37082 * 94.47947 * 23 14 13 41 41 H 1.09007 * 110.36440 * 216.80550 * 23 14 13 42 42 H 1.08001 * 120.00274 * 179.72938 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.3339 2.5024 0.0000 6 6 4.2717 0.0001 0.0005 7 6 3.5806 -1.1971 0.0008 8 6 4.3342 -2.5022 0.0013 9 8 4.5722 -2.9142 1.3488 10 6 5.2850 -4.1475 1.4622 11 1 5.1276 -4.7702 0.5815 12 6 4.8854 -4.9038 2.7566 13 6 6.1378 -5.7525 3.0616 14 7 7.2751 -5.1105 2.3864 15 6 8.5669 -5.5647 2.3929 16 1 9.2314 -5.3144 1.5791 17 6 9.0225 -6.3467 3.4453 18 7 9.9008 -7.3015 3.2236 19 14 8.3889 -6.0439 5.1763 20 1 7.4168 -4.9215 5.1584 21 1 9.5264 -5.6989 6.0664 22 1 7.7204 -7.2705 5.6803 23 6 6.7956 -3.8933 1.7067 24 6 2.1983 -1.1971 -0.0046 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6581 2.1325 -0.0004 29 1 4.5157 2.8166 -1.0278 30 1 3.7448 3.2622 0.5134 31 1 5.2864 2.3724 0.5139 32 1 5.3517 0.0002 0.0005 33 1 5.2866 -2.3719 -0.5124 34 1 3.7452 -3.2620 -0.5123 35 1 4.0205 -5.5429 2.5786 36 1 4.6878 -4.2027 3.5675 37 1 6.0023 -6.7640 2.6789 38 1 6.3145 -5.7836 4.1368 39 1 10.2850 -7.4115 2.3398 40 1 6.9375 -3.0214 2.3451 41 1 7.3156 -3.7587 0.7581 42 1 1.6583 -2.1324 -0.0089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222774300.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:24 Heat of formation + Delta-G solvation = -25.444379 kcal Electronic energy + Delta-G solvation = -20703.875934 eV Core-core repulsion = 17648.298815 eV Total energy + Delta-G solvation = -3055.577120 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.69615 -39.83156 -37.69777 -34.67943 -34.40039 -33.58036 -31.28180 -29.46500 -28.39294 -27.58228 -27.08047 -25.58382 -22.38545 -21.96800 -21.66486 -21.63051 -19.62649 -18.12260 -17.31846 -17.07283 -16.84115 -16.21925 -15.82335 -15.58705 -15.29693 -14.90196 -14.74306 -14.37295 -14.00197 -13.97903 -13.91674 -13.82733 -13.37922 -13.32710 -13.14946 -12.81244 -12.69941 -12.50198 -12.35716 -12.26394 -11.91342 -11.88871 -11.71748 -11.67360 -11.17017 -10.63265 -10.41212 -9.64813 -9.46666 -9.22476 -8.59970 -5.53827 0.30852 0.43208 1.41961 1.51260 1.71781 2.42724 2.48678 2.89558 3.04426 3.51344 3.67327 3.78441 3.84424 3.91473 3.93624 4.08275 4.21102 4.29698 4.33386 4.38535 4.50469 4.52971 4.59132 4.68082 4.69585 4.78406 4.80657 4.86258 4.92112 4.95570 4.98973 5.01573 5.06514 5.21061 5.23751 5.35569 5.60083 5.61627 5.67260 5.69394 6.09859 6.12083 6.23381 6.78222 7.44549 8.16620 8.72890 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029697 B = 0.003442 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.636796 B = 8132.013056 C = 8478.281847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.093 4.093 3 C -0.124 4.124 4 C -0.094 4.094 5 C -0.113 4.113 6 C -0.126 4.126 7 C -0.094 4.094 8 C 0.098 3.902 9 O -0.379 6.379 10 C 0.089 3.911 11 H 0.085 0.915 12 C -0.114 4.114 13 C 0.115 3.885 14 N -0.621 5.621 15 C -0.342 4.342 16 H 0.033 0.967 17 C -0.055 4.055 18 N -0.932 5.932 19 Si 1.093 2.907 20 H -0.263 1.263 21 H -0.293 1.293 22 H -0.277 1.277 23 C 0.107 3.893 24 C -0.119 4.119 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.144 0.856 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.118 0.882 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.033 0.967 38 H 0.028 0.972 39 H 0.253 0.747 40 H 0.021 0.979 41 H 0.035 0.965 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.169 17.556 -7.626 28.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.141 4.141 4 C -0.094 4.094 5 C -0.169 4.169 6 C -0.144 4.144 7 C -0.094 4.094 8 C 0.022 3.978 9 O -0.298 6.298 10 C 0.031 3.969 11 H 0.103 0.897 12 C -0.152 4.152 13 C -0.009 4.009 14 N -0.350 5.350 15 C -0.470 4.470 16 H 0.050 0.950 17 C -0.253 4.253 18 N -0.573 5.573 19 Si 0.919 3.081 20 H -0.189 1.189 21 H -0.220 1.220 22 H -0.203 1.203 23 C -0.018 4.018 24 C -0.137 4.137 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.161 0.839 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.136 0.864 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.051 0.949 38 H 0.046 0.954 39 H 0.062 0.938 40 H 0.039 0.961 41 H 0.053 0.947 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -21.085 17.088 -5.959 27.786 hybrid contribution 1.104 0.098 -1.959 2.251 sum -19.981 17.185 -7.918 27.518 Atomic orbital electron populations 1.20825 0.89065 1.03641 1.03214 1.20252 0.97635 0.92647 0.98754 1.21248 0.93382 0.98510 1.01003 1.20211 0.94516 0.95702 0.99002 1.20828 0.99859 0.93087 1.03138 1.21113 1.00026 0.92099 1.01207 1.19678 0.94261 0.93841 1.01601 1.21489 0.98637 0.93797 0.83859 1.87944 1.75652 1.39469 1.26733 1.23145 0.89943 0.85074 0.98769 0.89731 1.22618 0.97067 0.98382 0.97091 1.21783 0.86938 0.96010 0.96180 1.44686 1.03824 1.24365 1.62094 1.19661 0.88846 1.34164 1.04324 0.94968 1.27232 0.98287 0.93757 1.05985 1.71035 1.34519 1.26073 1.25630 0.83438 0.75456 0.77167 0.72083 1.18853 1.22049 1.20332 1.22174 0.94460 0.89535 0.95662 1.21124 0.93043 0.98788 1.00738 0.90061 0.91094 0.90358 0.83860 0.90111 0.90128 0.91700 0.86361 0.92632 0.90869 0.87556 0.90305 0.94904 0.95429 0.93756 0.96116 0.94673 0.85073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 10.01 71.24 0.71 -0.63 16 2 C -0.09 -1.72 5.88 -19.86 -0.12 -1.84 16 3 C -0.12 -2.22 9.36 22.27 0.21 -2.01 16 4 C -0.09 -1.90 5.88 -19.86 -0.12 -2.02 16 5 C -0.11 -1.65 10.01 71.24 0.71 -0.94 16 6 C -0.13 -3.05 9.36 22.27 0.21 -2.84 16 7 C -0.09 -2.33 5.51 -19.87 -0.11 -2.44 16 8 C 0.10 2.55 5.90 71.24 0.42 2.97 16 9 O -0.38 -12.10 10.13 -148.98 -1.51 -13.61 16 10 C 0.09 3.06 3.56 32.06 0.11 3.17 16 11 H 0.08 2.66 7.83 -2.39 -0.02 2.64 16 12 C -0.11 -3.83 6.68 31.78 0.21 -3.62 16 13 C 0.12 5.04 6.04 86.73 0.52 5.57 16 14 N -0.62 -31.87 3.05 -691.55 -2.11 -33.98 16 15 C -0.34 -20.55 10.24 84.03 0.86 -19.68 16 16 H 0.03 2.11 8.06 -2.91 -0.02 2.08 16 17 C -0.05 -3.30 5.29 84.86 0.45 -2.86 16 18 N -0.93 -59.80 13.70 21.65 0.30 -59.51 16 19 Si 1.09 54.16 26.21 68.60 1.80 55.96 16 20 H -0.26 -12.25 6.18 99.48 0.61 -11.63 16 21 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 23 C 0.11 4.65 6.97 86.93 0.61 5.25 16 24 C -0.12 -2.58 9.36 22.27 0.21 -2.37 16 25 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.07 0.81 8.09 -2.39 -0.02 0.79 16 27 H 0.08 0.75 8.09 -2.39 -0.02 0.73 16 28 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 31 H 0.06 0.99 8.09 -2.38 -0.02 0.97 16 32 H 0.12 2.82 8.06 -2.91 -0.02 2.80 16 33 H 0.06 1.44 8.09 -2.39 -0.02 1.42 16 34 H 0.07 1.62 8.06 -2.39 -0.02 1.60 16 35 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 37 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.03 1.25 3.84 -2.39 -0.01 1.24 16 39 H 0.25 16.29 8.73 -92.71 -0.81 15.48 16 40 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -71.21 341.68 4.21 -67.00 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.85 Total: 8.42 kcal Atomic # 6 Polarization: -29.17 SS G_CDS: 4.90 Total: -24.28 kcal Atomic # 7 Polarization: -91.67 SS G_CDS: -1.82 Total: -93.49 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -1.51 Total: -13.61 kcal Atomic # 14 Polarization: 54.16 SS G_CDS: 1.80 Total: 55.96 kcal Total: -71.21 4.21 -67.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222774300.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.552 kcal (2) G-P(sol) polarization free energy of solvation -71.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds