Wall clock time and date at job start Mon Mar 30 2020 02:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38233 * 120.00347 * 2 1 4 4 C 1.38232 * 120.00231 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00185 * 179.97438 * 4 3 2 6 6 C 1.38238 * 119.99925 * 0.02562 * 4 3 2 7 7 C 1.38234 * 119.99677 * 0.02562 * 6 4 3 8 8 C 1.50709 * 119.99512 * 179.97438 * 7 6 4 9 9 O 1.42906 * 109.46935 * 90.00087 * 8 7 6 10 10 C 1.42903 * 113.99676 * 180.02562 * 9 8 7 11 11 C 1.53514 * 114.17081 * 149.99722 * 10 9 8 12 12 N 1.47483 * 87.92777 * 87.61994 * 11 10 9 13 13 C 1.46903 * 110.99717 * 138.70421 * 12 11 10 14 14 C 1.50694 * 109.47066 * 169.99804 * 13 12 11 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47480 * 87.83900 * 27.00973 * 12 11 10 23 23 C 1.38227 * 120.00416 * 0.24734 * 7 6 4 24 24 H 1.09004 * 109.46979 * 89.99254 * 1 2 3 25 25 H 1.08995 * 109.47012 * 209.99528 * 1 2 3 26 26 H 1.08994 * 109.46669 * 329.99525 * 1 2 3 27 27 H 1.08001 * 119.99787 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.46598 * 270.02430 * 5 4 3 29 29 H 1.09003 * 109.47221 * 30.01405 * 5 4 3 30 30 H 1.09000 * 109.47652 * 150.02448 * 5 4 3 31 31 H 1.07995 * 119.99922 * 179.97438 * 6 4 3 32 32 H 1.09000 * 109.47386 * 329.99768 * 8 7 6 33 33 H 1.08994 * 109.46963 * 209.99700 * 8 7 6 34 34 H 1.08997 * 113.25538 * 17.04389 * 10 9 8 35 35 H 1.09000 * 113.47331 * 332.85672 * 11 10 9 36 36 H 1.08997 * 113.47627 * 202.38796 * 11 10 9 37 37 H 1.09007 * 109.47052 * 49.99488 * 13 12 11 38 38 H 1.09003 * 109.46808 * 290.00181 * 13 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.09004 * 113.47132 * 87.75237 * 22 12 11 41 41 H 1.09000 * 113.47538 * 218.21976 * 22 12 11 42 42 H 1.08004 * 120.00457 * 179.72384 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3342 2.5021 -0.0011 6 6 4.2717 -0.0001 -0.0016 7 6 3.5805 -1.1972 -0.0027 8 6 4.3340 -2.5024 -0.0044 9 8 4.5726 -2.9164 1.3424 10 6 5.2855 -4.1500 1.4535 11 6 6.1578 -4.2607 2.7119 12 7 4.9766 -4.7896 3.4191 13 6 5.3459 -5.9074 4.2977 14 6 4.1766 -6.2600 5.1805 15 1 3.2517 -5.7085 5.0976 16 6 4.2879 -7.2860 6.0950 17 7 5.4143 -7.9572 6.1963 18 14 2.8387 -7.7225 7.1898 19 1 2.9091 -6.9300 8.4437 20 1 1.5713 -7.4141 6.4798 21 1 2.8835 -9.1705 7.5162 22 6 4.4863 -5.2800 2.1175 23 6 2.1982 -1.1972 -0.0078 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3632 0.8899 0.5139 27 1 1.6583 2.1324 0.0004 28 1 4.5150 2.8167 -1.0290 29 1 3.7454 3.2619 0.5130 30 1 5.2870 2.3718 0.5120 31 1 5.3517 -0.0002 -0.0024 32 1 5.2862 -2.3715 -0.5185 33 1 3.7447 -3.2614 -0.5188 34 1 5.7919 -4.4389 0.5326 35 1 6.4959 -3.2967 3.0920 36 1 6.9672 -4.9845 2.6168 37 1 6.1946 -5.6176 4.9173 38 1 5.6171 -6.7718 3.6914 39 1 5.4926 -8.6787 6.8399 40 1 4.8497 -6.2759 1.8639 41 1 3.4079 -5.1799 1.9940 42 1 1.6581 -2.1325 -0.0132 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222775495.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:08 Heat of formation + Delta-G solvation = 7.982058 kcal Electronic energy + Delta-G solvation = -20371.097749 eV Core-core repulsion = 17316.970108 eV Total energy + Delta-G solvation = -3054.127641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.85956 -39.33675 -36.48464 -33.63369 -32.98104 -32.47009 -29.12627 -27.68371 -26.79772 -26.11787 -25.36505 -24.88302 -21.66250 -20.84147 -20.79496 -19.37737 -16.67966 -16.34644 -16.18569 -16.00465 -15.44579 -14.77688 -14.54219 -14.21808 -14.09235 -13.66463 -13.37725 -13.34623 -13.26447 -13.01862 -12.69117 -12.28666 -12.21431 -11.94190 -11.87090 -11.63733 -11.21422 -11.09309 -11.02983 -10.85639 -10.67635 -10.45620 -10.17751 -9.61543 -9.21286 -9.11795 -8.76079 -8.61264 -8.38723 -7.74005 -5.99706 -4.00165 1.21112 1.30371 3.35388 3.40564 3.44384 3.45801 4.04976 4.46738 4.62924 4.63922 4.71307 4.90247 5.02177 5.08831 5.18999 5.20118 5.25980 5.32550 5.35617 5.39471 5.42521 5.46447 5.49312 5.51201 5.69656 5.73646 5.90792 6.01475 6.03197 6.09799 6.20688 6.29961 6.44597 6.45069 6.47098 6.57233 6.73710 6.94123 7.21216 7.50885 7.72178 7.92822 8.17297 8.52970 9.07980 9.63702 11.11534 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021541 B = 0.003305 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.526546 B = 8470.511948 C = 9144.202519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.118 4.118 4 C -0.089 4.089 5 C -0.113 4.113 6 C -0.104 4.104 7 C -0.076 4.076 8 C 0.100 3.900 9 O -0.342 6.342 10 C 0.054 3.946 11 C -0.007 4.007 12 N -0.455 5.455 13 C 0.156 3.844 14 C -0.501 4.501 15 H 0.063 0.937 16 C 0.052 3.948 17 N -0.902 5.902 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.273 1.273 21 H -0.287 1.287 22 C -0.008 4.008 23 C -0.102 4.102 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.119 0.881 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.028 0.972 38 H 0.002 0.998 39 H 0.261 0.739 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.437 16.745 -17.351 24.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.087 4.087 3 C -0.136 4.136 4 C -0.089 4.089 5 C -0.169 4.169 6 C -0.122 4.122 7 C -0.076 4.076 8 C 0.023 3.977 9 O -0.260 6.260 10 C -0.005 4.005 11 C -0.136 4.136 12 N -0.178 5.178 13 C 0.029 3.971 14 C -0.540 4.540 15 H 0.081 0.919 16 C -0.148 4.148 17 N -0.542 5.542 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.198 1.198 21 H -0.213 1.213 22 C -0.138 4.138 23 C -0.120 4.120 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.137 0.863 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.139 0.861 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.020 0.980 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.834 17.115 -16.626 24.167 hybrid contribution -0.041 -1.224 0.163 1.235 sum -3.875 15.891 -16.463 23.207 Atomic orbital electron populations 1.20784 0.91137 1.02977 1.02136 1.19881 0.96085 0.93005 0.99752 1.20897 0.93505 0.97453 1.01789 1.19862 0.93828 0.95221 1.00017 1.20772 1.00019 0.94029 1.02104 1.20906 0.99719 0.91333 1.00292 1.19578 0.93625 0.94039 1.00358 1.21358 0.97991 0.92899 0.85452 1.88088 1.75923 1.38088 1.23937 1.23333 0.94438 0.85553 0.97171 1.24033 0.95077 1.01226 0.93299 1.69039 1.15160 1.26780 1.06801 1.20299 0.97291 0.87043 0.92423 1.21125 0.99019 1.15498 1.18353 0.91852 1.25014 0.96155 0.96217 0.97432 1.69961 1.25280 1.22518 1.36458 0.86471 0.82716 0.77273 0.80820 1.20603 1.19814 1.21331 1.24220 1.01394 0.95942 0.92204 1.20954 0.93454 0.97788 0.99825 0.91313 0.91297 0.91611 0.86273 0.91346 0.91622 0.91446 0.86053 0.92719 0.92563 0.91082 0.90147 0.91216 0.95360 0.97990 0.92983 0.91256 0.90333 0.85890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.01 0.36 -0.62 16 2 C -0.09 -0.98 5.88 -104.62 -0.62 -1.59 16 3 C -0.12 -1.25 9.36 -39.59 -0.37 -1.62 16 4 C -0.09 -0.96 5.88 -104.62 -0.62 -1.58 16 5 C -0.11 -0.89 10.01 36.01 0.36 -0.53 16 6 C -0.10 -1.24 9.36 -39.58 -0.37 -1.61 16 7 C -0.08 -0.98 5.51 -104.62 -0.58 -1.56 16 8 C 0.10 1.28 5.90 36.01 0.21 1.49 16 9 O -0.34 -5.79 10.38 -35.23 -0.37 -6.16 16 10 C 0.05 0.88 4.66 -26.20 -0.12 0.76 16 11 C -0.01 -0.13 7.52 -7.53 -0.06 -0.18 16 12 N -0.45 -10.63 6.32 -246.08 -1.55 -12.18 16 13 C 0.16 4.23 4.57 -4.98 -0.02 4.21 16 14 C -0.50 -14.88 9.39 -34.44 -0.32 -15.20 16 15 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 18 Si 0.90 22.39 29.54 -169.99 -5.02 17.37 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 C -0.01 -0.15 7.55 -7.54 -0.06 -0.21 16 23 C -0.10 -1.27 9.36 -39.58 -0.37 -1.64 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 26 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 27 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 30 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 31 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 33 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.07 0.94 7.88 -51.93 -0.41 0.53 16 35 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.07 1.24 7.91 -51.93 -0.41 0.83 16 37 H 0.03 0.82 8.08 -51.92 -0.42 0.40 16 38 H 0.00 0.06 7.30 -51.93 -0.38 -0.31 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.07 1.33 7.42 -51.93 -0.39 0.94 16 41 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 42 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 351.22 15.07 5.29 5.29 Total: -1.00 -33.11 351.22 -10.60 -43.71 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -7.03 Total: -2.85 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -2.66 Total: -18.45 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: -0.82 Total: -38.91 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.37 Total: -6.16 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.11 -10.60 -43.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222775495.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.697 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds