Wall clock time and date at job start Mon Mar 30 2020 02:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38233 * 120.00347 * 2 1 4 4 C 1.38232 * 120.00231 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00185 * 179.97438 * 4 3 2 6 6 C 1.38238 * 119.99925 * 0.02562 * 4 3 2 7 7 C 1.38234 * 119.99677 * 0.02562 * 6 4 3 8 8 C 1.50709 * 119.99512 * 179.97438 * 7 6 4 9 9 O 1.42906 * 109.46935 * 90.00087 * 8 7 6 10 10 C 1.42903 * 113.99676 * 180.02562 * 9 8 7 11 11 C 1.53514 * 114.17081 * 149.99722 * 10 9 8 12 12 N 1.47483 * 87.92777 * 87.61994 * 11 10 9 13 13 C 1.46903 * 110.99717 * 138.70421 * 12 11 10 14 14 C 1.50694 * 109.47066 * 169.99804 * 13 12 11 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47480 * 87.83900 * 27.00973 * 12 11 10 23 23 C 1.38227 * 120.00416 * 0.24734 * 7 6 4 24 24 H 1.09004 * 109.46979 * 89.99254 * 1 2 3 25 25 H 1.08995 * 109.47012 * 209.99528 * 1 2 3 26 26 H 1.08994 * 109.46669 * 329.99525 * 1 2 3 27 27 H 1.08001 * 119.99787 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.46598 * 270.02430 * 5 4 3 29 29 H 1.09003 * 109.47221 * 30.01405 * 5 4 3 30 30 H 1.09000 * 109.47652 * 150.02448 * 5 4 3 31 31 H 1.07995 * 119.99922 * 179.97438 * 6 4 3 32 32 H 1.09000 * 109.47386 * 329.99768 * 8 7 6 33 33 H 1.08994 * 109.46963 * 209.99700 * 8 7 6 34 34 H 1.08997 * 113.25538 * 17.04389 * 10 9 8 35 35 H 1.09000 * 113.47331 * 332.85672 * 11 10 9 36 36 H 1.08997 * 113.47627 * 202.38796 * 11 10 9 37 37 H 1.09007 * 109.47052 * 49.99488 * 13 12 11 38 38 H 1.09003 * 109.46808 * 290.00181 * 13 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.09004 * 113.47132 * 87.75237 * 22 12 11 41 41 H 1.09000 * 113.47538 * 218.21976 * 22 12 11 42 42 H 1.08004 * 120.00457 * 179.72384 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3342 2.5021 -0.0011 6 6 4.2717 -0.0001 -0.0016 7 6 3.5805 -1.1972 -0.0027 8 6 4.3340 -2.5024 -0.0044 9 8 4.5726 -2.9164 1.3424 10 6 5.2855 -4.1500 1.4535 11 6 6.1578 -4.2607 2.7119 12 7 4.9766 -4.7896 3.4191 13 6 5.3459 -5.9074 4.2977 14 6 4.1766 -6.2600 5.1805 15 1 3.2517 -5.7085 5.0976 16 6 4.2879 -7.2860 6.0950 17 7 5.4143 -7.9572 6.1963 18 14 2.8387 -7.7225 7.1898 19 1 2.9091 -6.9300 8.4437 20 1 1.5713 -7.4141 6.4798 21 1 2.8835 -9.1705 7.5162 22 6 4.4863 -5.2800 2.1175 23 6 2.1982 -1.1972 -0.0078 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3632 0.8899 0.5139 27 1 1.6583 2.1324 0.0004 28 1 4.5150 2.8167 -1.0290 29 1 3.7454 3.2619 0.5130 30 1 5.2870 2.3718 0.5120 31 1 5.3517 -0.0002 -0.0024 32 1 5.2862 -2.3715 -0.5185 33 1 3.7447 -3.2614 -0.5188 34 1 5.7919 -4.4389 0.5326 35 1 6.4959 -3.2967 3.0920 36 1 6.9672 -4.9845 2.6168 37 1 6.1946 -5.6176 4.9173 38 1 5.6171 -6.7718 3.6914 39 1 5.4926 -8.6787 6.8399 40 1 4.8497 -6.2759 1.8639 41 1 3.4079 -5.1799 1.9940 42 1 1.6581 -2.1325 -0.0132 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222775495.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:07 Heat of formation + Delta-G solvation = -13.230893 kcal Electronic energy + Delta-G solvation = -20372.017612 eV Core-core repulsion = 17316.970108 eV Total energy + Delta-G solvation = -3055.047503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.12561 -40.44933 -37.78782 -35.03594 -34.38368 -33.56536 -31.01981 -28.43962 -27.56685 -27.38396 -26.93411 -26.52930 -23.61324 -21.69630 -21.62608 -20.86742 -18.59637 -17.78130 -17.22861 -17.05339 -16.93129 -16.30410 -15.99920 -15.46157 -15.28221 -14.90108 -14.80785 -14.40260 -13.98974 -13.98808 -13.83776 -13.59968 -13.39813 -13.32546 -13.04175 -12.83328 -12.72680 -12.44901 -12.40693 -12.26354 -12.00868 -11.83507 -11.74249 -11.48463 -11.26034 -10.63990 -10.42694 -9.62290 -9.54959 -9.44252 -8.24985 -6.35231 0.33322 0.45564 1.37327 1.39561 1.51145 2.37743 2.44864 2.99172 3.06646 3.44369 3.47841 3.84932 3.88239 3.96035 3.98896 4.22181 4.32047 4.35424 4.46289 4.49918 4.53005 4.59585 4.65643 4.66864 4.70824 4.73579 4.81910 4.86121 4.87997 4.98405 5.00786 5.03796 5.07438 5.25733 5.36712 5.57148 5.62221 5.63285 5.71334 5.79519 6.08081 6.12543 6.31955 6.49548 6.79005 7.34282 8.86121 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021541 B = 0.003305 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.526546 B = 8470.511948 C = 9144.202519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.096 4.096 3 C -0.126 4.126 4 C -0.095 4.095 5 C -0.111 4.111 6 C -0.120 4.120 7 C -0.095 4.095 8 C 0.097 3.903 9 O -0.369 6.369 10 C 0.083 3.917 11 C -0.010 4.010 12 N -0.487 5.487 13 C 0.172 3.828 14 C -0.529 4.529 15 H 0.052 0.948 16 C 0.002 3.998 17 N -0.933 5.933 18 Si 0.971 3.029 19 H -0.272 1.272 20 H -0.267 1.267 21 H -0.276 1.276 22 C -0.013 4.013 23 C -0.125 4.125 24 H 0.083 0.917 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.142 0.858 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.131 0.869 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.000 1.000 38 H -0.014 1.014 39 H 0.266 0.734 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.174 17.903 -18.312 25.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.143 4.143 4 C -0.095 4.095 5 C -0.167 4.167 6 C -0.138 4.138 7 C -0.095 4.095 8 C 0.021 3.979 9 O -0.288 6.288 10 C 0.024 3.976 11 C -0.139 4.139 12 N -0.210 5.210 13 C 0.045 3.955 14 C -0.567 4.567 15 H 0.071 0.929 16 C -0.196 4.196 17 N -0.573 5.573 18 Si 0.795 3.205 19 H -0.198 1.198 20 H -0.192 1.192 21 H -0.201 1.201 22 C -0.143 4.143 23 C -0.143 4.143 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.160 0.840 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.148 0.852 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.134 0.866 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.018 0.982 38 H 0.003 0.997 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.568 18.288 -17.607 25.794 hybrid contribution 0.189 -1.500 0.412 1.567 sum -4.379 16.789 -17.195 24.427 Atomic orbital electron populations 1.20822 0.89514 1.03359 1.03180 1.20228 0.97472 0.92868 0.99060 1.21236 0.93748 0.98185 1.01172 1.20253 0.94294 0.96080 0.98919 1.20820 0.99886 0.92801 1.03231 1.21134 1.00371 0.91562 1.00748 1.19739 0.93971 0.94486 1.01354 1.21575 0.99413 0.93213 0.83710 1.88054 1.75998 1.37920 1.26830 1.23094 0.92484 0.84313 0.97704 1.24117 0.94494 1.01143 0.94162 1.68955 1.17928 1.25575 1.08565 1.19965 0.95485 0.87730 0.92331 1.21414 0.99413 1.16159 1.19692 0.92944 1.25930 0.99183 0.95789 0.98684 1.70066 1.27244 1.22873 1.37126 0.85365 0.78986 0.77484 0.78679 1.19786 1.19186 1.20074 1.24285 1.01425 0.97599 0.90976 1.21133 0.93721 0.98452 1.01005 0.89874 0.91729 0.90399 0.84046 0.89881 0.90547 0.91256 0.85155 0.90420 0.91497 0.86638 0.90090 0.90115 0.98213 0.99666 0.92491 0.90914 0.91114 0.86035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 10.01 71.24 0.71 -1.06 16 2 C -0.10 -2.06 5.88 -19.86 -0.12 -2.18 16 3 C -0.13 -2.45 9.36 22.27 0.21 -2.25 16 4 C -0.10 -1.91 5.88 -19.87 -0.12 -2.03 16 5 C -0.11 -1.52 10.01 71.24 0.71 -0.81 16 6 C -0.12 -2.74 9.36 22.27 0.21 -2.53 16 7 C -0.10 -2.40 5.51 -19.87 -0.11 -2.51 16 8 C 0.10 2.33 5.90 71.24 0.42 2.75 16 9 O -0.37 -12.10 10.38 -148.98 -1.55 -13.65 16 10 C 0.08 2.59 4.66 30.94 0.14 2.73 16 11 C -0.01 -0.37 7.52 83.58 0.63 0.26 16 12 N -0.49 -23.21 6.32 -932.85 -5.89 -29.10 16 13 C 0.17 9.67 4.57 85.55 0.39 10.06 16 14 C -0.53 -32.14 9.39 25.60 0.24 -31.90 16 15 H 0.05 3.22 7.81 -2.91 -0.02 3.20 16 16 C 0.00 0.13 5.46 84.66 0.46 0.59 16 17 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 18 Si 0.97 46.11 29.54 68.60 2.03 48.14 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 22 C -0.01 -0.52 7.55 83.58 0.63 0.11 16 23 C -0.12 -3.08 9.36 22.27 0.21 -2.87 16 24 H 0.08 1.06 8.14 -2.38 -0.02 1.05 16 25 H 0.06 1.06 8.09 -2.39 -0.02 1.05 16 26 H 0.08 1.03 8.08 -2.39 -0.02 1.01 16 27 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 30 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 31 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 32 H 0.08 1.50 8.09 -2.39 -0.02 1.48 16 33 H 0.07 1.45 8.08 -2.39 -0.02 1.43 16 34 H 0.12 2.65 7.88 -2.39 -0.02 2.63 16 35 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 36 H 0.08 2.83 7.91 -2.39 -0.02 2.81 16 37 H 0.00 -0.01 8.08 -2.38 -0.02 -0.03 16 38 H -0.01 -0.83 7.30 -2.39 -0.02 -0.85 16 39 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 40 H 0.07 2.79 7.42 -2.39 -0.02 2.77 16 41 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 42 H 0.12 2.87 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -72.33 351.22 0.47 -71.85 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.97 Total: 11.61 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: 4.63 Total: -31.63 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -5.61 Total: -86.33 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -1.55 Total: -13.65 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -72.33 0.47 -71.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222775495.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.624 kcal (2) G-P(sol) polarization free energy of solvation -72.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds