Wall clock time and date at job start Mon Mar 30 2020 02:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38239 * 119.99905 * 2 1 4 4 C 1.38238 * 119.99832 * 180.24725 * 3 2 1 5 5 C 1.38241 * 120.00048 * 359.77243 * 4 3 2 6 6 C 1.38237 * 119.99896 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.99766 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00163 * 179.78496 * 2 1 3 9 9 C 1.50699 * 119.99868 * 0.02562 * 8 2 1 10 10 O 1.42903 * 109.47120 * 269.72278 * 9 8 2 11 11 C 1.42902 * 113.99935 * 179.97438 * 10 9 8 12 12 H 1.08998 * 110.64069 * 328.31401 * 11 10 9 13 13 C 1.55448 * 110.70807 * 205.00306 * 11 10 9 14 14 C 1.54905 * 101.45165 * 206.14636 * 13 11 10 15 15 N 1.47419 * 104.92834 * 37.00468 * 14 13 11 16 16 C 1.36940 * 125.65165 * 155.84166 * 15 14 13 17 17 H 1.08001 * 120.00359 * 179.97438 * 16 15 14 18 18 C 1.38813 * 119.99579 * 359.97016 * 16 15 14 19 19 N 1.31621 * 120.00215 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99909 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47351 * 89.99931 * 20 18 16 22 22 H 1.48502 * 109.46991 * 209.99842 * 20 18 16 23 23 H 1.48496 * 109.47037 * 329.99511 * 20 18 16 24 24 C 1.47026 * 108.70576 * 335.81449 * 15 14 13 25 25 H 1.09004 * 109.47114 * 270.21132 * 1 2 3 26 26 H 1.09000 * 109.47307 * 30.20911 * 1 2 3 27 27 H 1.08997 * 109.47261 * 150.21682 * 1 2 3 28 28 H 1.07993 * 120.00021 * 0.04431 * 3 2 1 29 29 H 1.07999 * 119.99943 * 179.79016 * 4 3 2 30 30 H 1.07993 * 119.99875 * 179.97438 * 5 4 3 31 31 H 1.08999 * 109.47606 * 269.97393 * 7 6 5 32 32 H 1.08999 * 109.47275 * 29.98137 * 7 6 5 33 33 H 1.09005 * 109.46579 * 149.98041 * 7 6 5 34 34 H 1.08998 * 109.47238 * 149.72312 * 9 8 2 35 35 H 1.09002 * 109.47225 * 29.72353 * 9 8 2 36 36 H 1.09002 * 111.11560 * 88.08951 * 13 11 10 37 37 H 1.09004 * 111.00873 * 324.15360 * 13 11 10 38 38 H 1.09002 * 110.36692 * 278.10842 * 14 13 11 39 39 H 1.08995 * 110.36664 * 155.89643 * 14 13 11 40 40 H 0.96996 * 120.00198 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.88266 * 120.47537 * 24 15 14 42 42 H 1.09000 * 109.88221 * 241.64354 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 -0.0052 5 6 4.2717 0.0000 -0.0056 6 6 3.5805 -1.1972 -0.0014 7 6 4.3340 -2.5022 -0.0024 8 6 2.1982 -1.1971 0.0045 9 6 1.4447 -2.5022 0.0088 10 8 1.2116 -2.9132 1.3575 11 6 0.4993 -4.1465 1.4744 12 1 -0.1938 -4.2703 0.6423 13 6 -0.2496 -4.2219 2.8345 14 6 -0.3386 -5.7531 3.0520 15 7 0.9360 -6.2847 2.5363 16 6 1.5186 -7.4657 2.9120 17 1 2.4579 -7.7681 2.4731 18 6 0.9017 -8.2741 3.8569 19 7 -0.2433 -7.9057 4.3914 20 14 1.6966 -9.8848 4.3698 21 1 2.5976 -9.6461 5.5259 22 1 0.6420 -10.8562 4.7565 23 1 2.4820 -10.4327 3.2349 24 6 1.4780 -5.3372 1.5514 25 1 -0.3633 0.0038 1.0277 26 1 -0.3634 0.8881 -0.5171 27 1 -0.3633 -0.8919 -0.5104 28 1 1.6582 2.1324 0.0007 29 1 4.1205 2.1325 -0.0086 30 1 5.3516 0.0000 -0.0100 31 1 4.5115 -2.8186 -1.0303 32 1 5.2885 -2.3711 0.5074 33 1 3.7470 -3.2610 0.5150 34 1 2.0318 -3.2624 -0.5064 35 1 0.4903 -2.3725 -0.5016 36 1 -1.2430 -3.7793 2.7608 37 1 0.3300 -3.7478 3.6265 38 1 -1.1769 -6.1677 2.4921 39 1 -0.4427 -5.9800 4.1130 40 1 -0.6742 -8.4704 5.0519 41 1 2.4599 -4.9897 1.8727 42 1 1.5536 -5.8187 0.5764 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222826475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:32 Heat of formation + Delta-G solvation = -1.683670 kcal Electronic energy + Delta-G solvation = -21273.919799 eV Core-core repulsion = 18219.373021 eV Total energy + Delta-G solvation = -3054.546778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.90567 -38.13507 -35.84298 -33.62280 -32.78369 -31.88911 -29.21080 -28.08280 -26.95881 -26.67147 -25.57124 -24.19927 -20.91046 -20.72687 -20.17723 -20.07420 -16.98672 -16.61409 -16.19569 -16.14432 -14.85672 -14.73704 -14.49500 -14.02104 -13.73442 -13.54292 -13.22234 -13.17931 -12.98218 -12.67395 -12.42133 -12.24450 -11.95391 -11.72642 -11.64980 -11.39449 -11.13707 -10.98423 -10.81061 -10.73981 -10.72394 -10.20888 -10.10169 -9.75642 -9.53666 -9.06254 -8.69021 -8.63956 -8.56790 -6.82355 -5.64021 -3.05931 1.25762 1.34124 3.41421 3.45949 3.48076 3.56212 4.22728 4.51772 4.73332 4.75813 4.88242 5.01313 5.10406 5.25983 5.35415 5.40762 5.46920 5.51324 5.53298 5.60810 5.66000 5.67108 5.70079 5.77452 5.82800 5.88717 5.92680 6.12518 6.24435 6.37105 6.43126 6.50911 6.54786 6.61495 6.68172 6.68297 6.74596 6.98503 7.50832 7.63838 7.67247 7.86855 8.37184 9.23001 9.83843 10.48373 11.40031 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030723 B = 0.003826 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.158960 B = 7316.888787 C = 7970.176936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.062 4.062 3 C -0.134 4.134 4 C -0.111 4.111 5 C -0.133 4.133 6 C -0.058 4.058 7 C -0.123 4.123 8 C -0.087 4.087 9 C 0.097 3.903 10 O -0.367 6.367 11 C 0.074 3.926 12 H 0.062 0.938 13 C -0.136 4.136 14 C 0.152 3.848 15 N -0.602 5.602 16 C -0.222 4.222 17 H 0.077 0.923 18 C -0.012 4.012 19 N -0.923 5.923 20 Si 0.915 3.085 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.117 3.883 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.013 0.987 39 H 0.111 0.889 40 H 0.252 0.748 41 H 0.033 0.967 42 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.738 16.896 -10.328 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.062 4.062 3 C -0.152 4.152 4 C -0.129 4.129 5 C -0.151 4.151 6 C -0.058 4.058 7 C -0.180 4.180 8 C -0.087 4.087 9 C 0.020 3.980 10 O -0.286 6.286 11 C 0.016 3.984 12 H 0.080 0.920 13 C -0.175 4.175 14 C 0.027 3.973 15 N -0.329 5.329 16 C -0.350 4.350 17 H 0.095 0.905 18 C -0.207 4.207 19 N -0.572 5.572 20 Si 0.746 3.254 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.207 1.207 24 C -0.009 4.009 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.031 0.969 39 H 0.128 0.872 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 3.757 16.808 -10.040 19.935 hybrid contribution 0.376 -0.899 -0.033 0.975 sum 4.133 15.909 -10.073 19.278 Atomic orbital electron populations 1.20875 0.91184 1.02481 1.02922 1.19783 0.96117 0.92458 0.97852 1.20951 0.94249 0.97246 1.02742 1.21095 0.94299 0.97829 0.99691 1.20987 0.99653 0.91942 1.02518 1.19825 0.93031 0.95622 0.97297 1.20914 1.00137 0.94665 1.02257 1.19390 0.92939 0.93896 1.02472 1.21326 0.98038 0.92783 0.85818 1.88027 1.76994 1.39588 1.24036 1.23325 0.92937 0.83388 0.98731 0.92027 1.23179 0.98292 1.00882 0.95108 1.21957 0.87013 0.85357 1.02960 1.44385 1.22592 1.20529 1.45378 1.19091 1.03383 0.94322 1.18198 0.90470 1.24791 0.97191 0.99191 0.99510 1.69778 1.17426 1.37825 1.32162 0.86058 0.78047 0.82857 0.78454 1.21553 1.21636 1.20744 1.21715 0.96031 0.90161 0.93017 0.90574 0.91803 0.91198 0.86218 0.86245 0.86156 0.91205 0.91451 0.90250 0.92522 0.92597 0.92018 0.91174 0.96885 0.87183 0.93700 0.94934 0.96306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.60 36.00 0.35 -0.89 16 2 C -0.06 -0.77 5.88 -104.62 -0.62 -1.38 16 3 C -0.13 -1.47 9.70 -39.58 -0.38 -1.86 16 4 C -0.11 -1.17 10.05 -39.58 -0.40 -1.57 16 5 C -0.13 -1.52 9.70 -39.58 -0.38 -1.90 16 6 C -0.06 -0.75 5.88 -104.63 -0.62 -1.36 16 7 C -0.12 -1.48 9.19 36.00 0.33 -1.15 16 8 C -0.09 -1.19 5.51 -104.62 -0.58 -1.77 16 9 C 0.10 1.38 4.72 36.01 0.17 1.55 16 10 O -0.37 -6.46 10.04 -35.23 -0.35 -6.82 16 11 C 0.07 1.40 3.41 -24.74 -0.08 1.31 16 12 H 0.06 1.07 7.88 -51.93 -0.41 0.66 16 13 C -0.14 -2.75 6.83 -24.43 -0.17 -2.91 16 14 C 0.15 3.78 5.88 -2.53 -0.01 3.77 16 15 N -0.60 -15.95 3.39 -170.08 -0.58 -16.53 16 16 C -0.22 -6.32 10.27 -15.06 -0.15 -6.47 16 17 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 18 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 19 N -0.92 -27.17 10.09 55.49 0.56 -26.61 16 20 Si 0.92 22.28 29.55 -169.99 -5.02 17.25 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.12 2.58 7.02 -3.06 -0.02 2.56 16 25 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 27 H 0.07 0.72 5.94 -51.93 -0.31 0.41 16 28 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 30 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 33 H 0.08 1.11 6.69 -51.93 -0.35 0.76 16 34 H 0.06 0.78 6.70 -51.93 -0.35 0.43 16 35 H 0.06 0.72 5.90 -51.93 -0.31 0.41 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.11 3.06 5.87 -51.93 -0.30 2.76 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.03 0.73 8.06 -51.93 -0.42 0.32 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 335.91 15.07 5.06 5.06 Total: -1.00 -31.21 335.91 -9.63 -40.84 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -6.63 Total: -0.68 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -2.66 Total: -12.51 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: -0.02 Total: -43.14 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.35 Total: -6.82 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.21 -9.63 -40.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222826475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.158 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds